Structures of the ß-Keratin Filaments and Keratin Intermediate Filaments in the Epidermal Appendages of Birds and Reptiles (Sauropsids)

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Structures of the ß-Keratin Filaments and Keratin Intermediate Filaments in the Epidermal Appendages of Birds and Reptiles (Sauropsids) G C A T T A C G G C A T genes Review Structures of the ß-Keratin Filaments and Keratin Intermediate Filaments in the Epidermal Appendages of Birds and Reptiles (Sauropsids) David A.D. Parry School of Fundamental Sciences, Massey University, Private Bag 11-222, Palmerston North 4442, New Zealand; [email protected]; Tel.: +64-6-9517620; Fax: +64-6-3557953 Abstract: The epidermal appendages of birds and reptiles (the sauropsids) include claws, scales, and feathers. Each has specialized physical properties that facilitate movement, thermal insulation, defence mechanisms, and/or the catching of prey. The mechanical attributes of each of these appendages originate from its fibril-matrix texture, where the two filamentous structures present, i.e., the corneous ß-proteins (CBP or ß-keratins) that form 3.4 nm diameter filaments and the α-fibrous molecules that form the 7–10 nm diameter keratin intermediate filaments (KIF), provide much of the required tensile properties. The matrix, which is composed of the terminal domains of the KIF molecules and the proteins of the epidermal differentiation complex (EDC) (and which include the terminal domains of the CBP), provides the appendages, with their ability to resist compression and torsion. Only by knowing the detailed structures of the individual components and the manner in which they interact with one another will a full understanding be gained of the physical properties of the tissues as a whole. Towards that end, newly-derived aspects of the detailed conformations of the two filamentous structures will be discussed and then placed in the context of former knowledge. Citation: Parry, D.A.D. Structures of the ß-Keratin Filaments and Keratin Keywords: corneous ß-proteins; keratin intermediate filaments; X-ray fiber diffraction Intermediate Filaments in the Epidermal Appendages of Birds and Reptiles (Sauropsids). Genes 2021, 12, 591. https://doi.org/10.3390/ 1. Introduction genes12040591 Structural studies on the epidermal appendages of birds and reptiles (sauropsids) pre- sented in this review will draw on data, not only from the birds, but also from the crocodiles, Academic Editor: Matthew Greenwold turtles, lizards, snakes, and tuatara. An appreciation of the relationships between these vertebrates is, therefore, of some value and towards that end the phylogenetic classification Received: 18 February 2021 of the sauropsids is shown in Figure1. This illustrates that the archelosaurs diverged into Accepted: 15 April 2021 the archosaurs (birds and crocodiles) and the testudines (turtles) about 272 Mya, and that Published: 17 April 2021 the lepidosaurs diverged in to the squamates (lizards and snakes) and the rhynchocephalia (tuatara) about 230 Mya [1–4]. Whilst this diversification will necessarily result in impor- Publisher’s Note: MDPI stays neutral tant differences between the species it is expected that major similarities will remain, a with regard to jurisdictional claims in supposition borne out by much of the data presented here. published maps and institutional affil- iations. Electron microscopy investigations of the cross-sections of the hard keratins constitut- ing the epidermal appendages (feathers, claws, scales) of the sauropsids have shown that these tissues have a filament-matrix texture [6–12]. This is dominated by filaments about 3.4 nm in diameter that provide much of the tensile strength of the tissue (Figure2). The matrix formed by the terminal domains of the filament-forming corneous ß-proteins (CBP) Copyright: © 2021 by the author. and the other proteins of the epidermal differentiation complex (EDC) [13], in contrast, has Licensee MDPI, Basel, Switzerland. an important role in specifying hardness, toughness, pliability, compression attributes, and This article is an open access article resistance to torsion and flexibility [14–22]. A second type of filament, about 7–10 nm in distributed under the terms and conditions of the Creative Commons diameter, has also been observed in these appendages. These filaments—the keratin inter- Attribution (CC BY) license (https:// mediate filaments (KIF)—are less common than their smaller counterparts [23] and tend creativecommons.org/licenses/by/ to occur in discrete layers akin to those sometimes seen in the mammalian hard keratins, 4.0/). Genes 2021, 12, 591. https://doi.org/10.3390/genes12040591 https://www.mdpi.com/journal/genes Genes 2021, 12, x FOR PEER REVIEW 2 of 21 Genes 2021, 12, 591 2 of 19 Genes 2021, 12, x FOR PEER REVIEW 2 of 21 such as hair and quill [24–30]. Their terminal domains, likewise, form an important part of the matrix structure. Figure 1. Phylogenetic classification of the sauropsids. The branching times are measured in millions of years (Mya) and are based on studies of mitochondrial DNA [1]. Figure reproduced from [5] with permission of Elsevier. Electron microscopy investigations of the cross-sections of the hard keratins consti- tuting the epidermal appendages (feathers, claws, scales) of the sauropsids have shown that these tissues have a filament-matrix texture [6–12]. This is dominated by filaments about 3.4 nm in diameter that provide much of the tensile strength of the tissue (Figure 2). The matrix formed by the terminal domains of the filament-forming corneous ß-proteins (CBP) and the other proteins of the epidermal differentiation complex (EDC) [13], in con- trast, has an important role in specifying hardness, toughness, pliability, compression at- tributes, and resistance to torsion and flexibility [14–22]. A second type of filament, about 7–10 nm in diameter, has also been observed in these appendages. These filaments—the keratin intermediate filaments (KIF)—are less common than their smaller counterparts [23] and tend to occur in discrete layers akin to those sometimes seen in the mammalian Figure 1. Phylogenetic classificationclassificationhard keratins, of the sauropsids.sasuchuropsids. as hair The and branching quill [24–30]. times Their are measuredmeasurterminaled domains, in millions likewise, of years form (Mya) an and are based on studies ofof mitochondrialmitochondrialimportant DNADNA part of [[1].1 ].the Figure matrix reproducedreproduced structure. fromfrom [[5]5] withwith permissionpermission ofof Elsevier.Elsevier. Electron microscopy investigations of the cross-sections of the hard keratins consti- tuting the epidermal appendages (feathers, claws, scales) of the sauropsids have shown that these tissues have a filament-matrix texture [6–12]. This is dominated by filaments about 3.4 nm in diameter that provide much of the tensile strength of the tissue (Figure 2). The matrix formed by the terminal domains of the filament-forming corneous ß-proteins (CBP) and the other proteins of the epidermal differentiation complex (EDC) [13], in con- trast, has an important role in specifying hardness, toughness, pliability, compression at- tributes, and resistance to torsion and flexibility [14–22]. A second type of filament, about 7–10 nm in diameter, has also been observed in these appendages. These filaments—the keratin intermediate filaments (KIF)—are less common than their smaller counterparts [23] and tend to occur in discrete layers akin to those sometimes seen in the mammalian hard keratins, such as hair and quill [24–30]. Their terminal domains, likewise, form an important part of the matrix structure. Figure 2. Transmission electron micrograph of a cross-section of feather keratin showing filaments about 3–4 nm in diameter [6]. Figure reproduced from [31] with permission of Elsevier. Over the past 20 years, hundreds of sequences of closely related families of corneous ß-proteins (CBP, also known as ß-keratins; [32,33]) have been published. These sequences represent every branch in the phylogenetic classification of the birds and reptiles and include, for example, those from chicken and zebra finch [34], crocodile and alligator [28,35], turtle [29], tuatara [33,36], green anole lizard [37], and snake [26]. Chains from each of these protein families form the 3.4 nm diameter filaments that exist in that particular species. A much smaller number of sequences of the closely related families of chains that assemble to form the 7–10 nm KIF in the sauropsids have been published thus far (Anolis carolinensis,[38–40]; Sphenodon punctatus,[36]). Both sets of sequence data (CBP and KIF) have provided new insights into the structures of the two filament types, and these will be described in Sections2 and3, respectively. Genes 2021, 12, 591 3 of 19 X-ray diffraction studies on the 3.4 nm filaments and their constituent CBPs have largely been confined to those based on seagull feather rachis (Larus novae-hollandiae). This material in its natural form contains highly orientated filament bundles, thereby making the rachis ideally suited to provide the most detailed X-ray patterns possible (Figure3a). The well-defined row lines present that indicate lateral order (Figure3c) can be removed by pressing the specimen in steam (Figure3d). Less detailed X-ray data have also been obtained from other materials, including goanna claw (Figure3e; Varanus varius,[24]), chicken scale (Gallus gallus domesticus,[41]), snake scale (unidentified species,[24]) and tuatara Genes 2021, 12, x FOR PEER REVIEW 4 of 21 claw [42]. Figure 3. High angle X-ray diffractions patterns of (a) seagull feather rachis (Larus novae-hollandiae), which shows features of a Figure 3. High angle X-ray diffractions patterns of (a) seagull feather rachis (Larus novae-hollandiae), which shows features ß-conformation,of a ß-conformation, and (b) porcupine and (b) quill porcupine (Hystrix quill cristata(Hystrix), cristata which), which is based is based on theon theα-conformation α-conformation with with its its characteristic characteristic 0.51 nm meridional reflection0.51 nm meridional and the reflection 0.98 nm and equatorial the 0.98 nm and equatorial near-equatorial and near-equatorial reflections, reflections, (c,d) show (c,d) show the samethe same seagull seagull feather rachis feather rachis before and after pressing in steam to remove the lateral organisation between the filaments and (e) goanna before and afterclaw ( pressingVaranus varius in steam).
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