ECSIT Is a Critical Limiting Factor for Cardiac Function
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NDUFAF1 Antibody
Efficient Professional Protein and Antibody Platforms NDUFAF1 Antibody Basic information: Catalog No.: UPA63763 Source: Rabbit Size: 50ul/100ul Clonality: monoclonal Concentration: 1mg/ml Isotype: Rabbit IgG Purification: Protein A purified. Useful Information: WB:1:1000 ICC:1:50-1:200 Applications: IHC:1:50-1:200 FC:1:50-1:100 Reactivity: Human Specificity: This antibody recognizes NDUFAF1 protein. Immunogen: Synthetic peptide within C terminal human NDUFAF1. This gene encodes a complex I assembly factor protein. Complex I (NADH-ubiquinone oxidoreductase) catalyzes the transfer of electrons from NADH to ubiquinone (coenzyme Q) in the first step of the mitochondrial respiratory chain, resulting in the translocation of protons across the inner mitochondrial membrane. The encoded protein is required for assembly of complex I, and mutations in this gene are a cause of mitochondrial complex I deficiency. Alternatively spliced transcript variants have been observed for Description: this gene, and a pseudogene of this gene is located on the long arm of chromosome 19. Part of the mitochondrial complex I assembly (MCIA) com- plex. The complex comprises at least TMEM126B, NDUFAF1, ECSIT, and ACAD9. Interacts with ECSIT. Interacts with ACAD9. At early stages of com- plex I assembly, it is found in intermediate subcomplexes that contain dif- ferent subunits including NDUFB6, NDUFA6, NDUFA9, NDUFS3, NDUFS7, ND1, ND2 and ND3 Uniprot: Q9Y375 Human BiowMW: 38 kDa Buffer: 1*TBS (pH7.4), 1%BSA, 50%Glycerol. Preservative: 0.05% Sodium Azide. Storage: Store at 4°C short term and -20°C long term. Avoid freeze-thaw cycles. Note: For research use only, not for use in diagnostic procedure. -
Molecular Mechanism of ACAD9 in Mitochondrial Respiratory Complex 1 Assembly
bioRxiv preprint doi: https://doi.org/10.1101/2021.01.07.425795; this version posted January 9, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Molecular mechanism of ACAD9 in mitochondrial respiratory complex 1 assembly Chuanwu Xia1, Baoying Lou1, Zhuji Fu1, Al-Walid Mohsen2, Jerry Vockley2, and Jung-Ja P. Kim1 1Department of Biochemistry, Medical College of Wisconsin, Milwaukee, Wisconsin, 53226, USA 2Department of Pediatrics, University of Pittsburgh School of Medicine, University of Pittsburgh, Children’s Hospital of Pittsburgh of UPMC, Pittsburgh, PA 15224, USA Abstract ACAD9 belongs to the acyl-CoA dehydrogenase family, which catalyzes the α-β dehydrogenation of fatty acyl-CoA thioesters. Thus, it is involved in fatty acid β-oxidation (FAO). However, it is now known that the primary function of ACAD9 is as an essential chaperone for mitochondrial respiratory complex 1 assembly. ACAD9 interacts with ECSIT and NDUFAF1, forming the mitochondrial complex 1 assembly (MCIA) complex. Although the role of MCIA in the complex 1 assembly pathway is well studied, little is known about the molecular mechanism of the interactions among these three assembly factors. Our current studies reveal that when ECSIT interacts with ACAD9, the flavoenzyme loses the FAD cofactor and consequently loses its FAO activity, demonstrating that the two roles of ACAD9 are not compatible. ACAD9 binds to the carboxy-terminal half (C-ECSIT), and NDUFAF1 binds to the amino-terminal half of ECSIT. Although the binary complex of ACAD9 with ECSIT or with C-ECSIT is unstable and aggregates easily, the ternary complex of ACAD9-ECSIT-NDUFAF1 (i.e., the MCIA complex) is soluble and extremely stable. -
An Essential Role for ECSIT in Mitochondrial Complex I Assembly and Mitophagy in Macrophages
Article An Essential Role for ECSIT in Mitochondrial Complex I Assembly and Mitophagy in Macrophages Graphical Abstract Authors Fla´ via R.G. Carneiro, Alice Lepelley, John J. Seeley, Matthew S. Hayden, Sankar Ghosh Correspondence [email protected] In Brief Macrophages rely on fine-tuning their metabolism to fulfill their anti-bacterial functions. Carneiro et al. show that the complex I assembly factor ECSIT is an essential regulator of the balance between mitochondrial respiration and glycolysis and the maintenance of a healthy mitochondrial pool through mitophagy. Highlights d Loss of ECSIT in macrophages leads to a striking glycolytic shift d ECSIT is essential for complex I assembly and stability in macrophages d Role of ECSIT in mROS production and removal of damaged mitochondria by mitophagy Carneiro et al., 2018, Cell Reports 22, 2654–2666 March 6, 2018 ª 2018 The Author(s). https://doi.org/10.1016/j.celrep.2018.02.051 Cell Reports Article An Essential Role for ECSIT in Mitochondrial Complex I Assembly and Mitophagy in Macrophages Fla´ via R.G. Carneiro,1,3,4 Alice Lepelley,1,4 John J. Seeley,1 Matthew S. Hayden,1,2 and Sankar Ghosh1,5,* 1Department of Microbiology and Immunology, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY 10032, USA 2Section of Dermatology, Department of Surgery, Dartmouth-Hitchcock Medical Center, Lebanon, NH 03756, USA 3FIOCRUZ, Center for Technological Development in Health (CDTS), Rio de Janeiro, Brazil 4These authors contributed equally 5Lead Contact *Correspondence: [email protected] https://doi.org/10.1016/j.celrep.2018.02.051 SUMMARY 2015). There, ECSIT-dependent mROS production promotes activation of the phagosomal nicotinamide adenine dinucleotide ECSIT is a mitochondrial complex I (CI)-associated phosphate (NADPH) oxidase system and ROS-dependent protein that has been shown to regulate the pro- killing of engulfed microbes (West et al., 2011). -
New Perspective in Diagnostics of Mitochondrial Disorders
Pronicka et al. J Transl Med (2016) 14:174 DOI 10.1186/s12967-016-0930-9 Journal of Translational Medicine RESEARCH Open Access New perspective in diagnostics of mitochondrial disorders: two years’ experience with whole‑exome sequencing at a national paediatric centre Ewa Pronicka1,2*, Dorota Piekutowska‑Abramczuk1†, Elżbieta Ciara1†, Joanna Trubicka1†, Dariusz Rokicki2, Agnieszka Karkucińska‑Więckowska3, Magdalena Pajdowska4, Elżbieta Jurkiewicz5, Paulina Halat1, Joanna Kosińska6, Agnieszka Pollak7, Małgorzata Rydzanicz6, Piotr Stawinski7, Maciej Pronicki3, Małgorzata Krajewska‑Walasek1 and Rafał Płoski6* Abstract Background: Whole-exome sequencing (WES) has led to an exponential increase in identification of causative vari‑ ants in mitochondrial disorders (MD). Methods: We performed WES in 113 MD suspected patients from Polish paediatric reference centre, in whom routine testing failed to identify a molecular defect. WES was performed using TruSeqExome enrichment, followed by variant prioritization, validation by Sanger sequencing, and segregation with the disease phenotype in the family. Results: Likely causative mutations were identified in 67 (59.3 %) patients; these included variants in mtDNA (6 patients) and nDNA: X-linked (9 patients), autosomal dominant (5 patients), and autosomal recessive (47 patients, 11 homozygotes). Novel variants accounted for 50.5 % (50/99) of all detected changes. In 47 patients, changes in 31 MD-related genes (ACAD9, ADCK3, AIFM1, CLPB, COX10, DLD, EARS2, FBXL4, MTATP6, MTFMT, MTND1, MTND3, MTND5, NAXE, NDUFS6, NDUFS7, NDUFV1, OPA1, PARS2, PC, PDHA1, POLG, RARS2, RRM2B, SCO2, SERAC1, SLC19A3, SLC25A12, TAZ, TMEM126B, VARS2) were identified. The ACAD9, CLPB, FBXL4, PDHA1 genes recurred more than twice suggesting higher general/ethnic prevalence. In 19 cases, variants in 18 non-MD related genes (ADAR, CACNA1A, CDKL5, CLN3, CPS1, DMD, DYSF, GBE1, GFAP, HSD17B4, MECP2, MYBPC3, PEX5, PGAP2, PIGN, PRF1, SBDS, SCN2A) were found. -
TLR2 Signaling Pathway Combats Streptococcus Uberis Infection by Inducing Mitochondrial Reactive Oxygen Species Production
cells Article TLR2 Signaling Pathway Combats Streptococcus uberis Infection by Inducing Mitochondrial Reactive Oxygen Species Production 1, 1, 1 1,2 1 2 Bin Li y, Zhixin Wan y, Zhenglei Wang , Jiakun Zuo , Yuanyuan Xu , Xiangan Han , Vanhnaseng Phouthapane 3 and Jinfeng Miao 1,* 1 MOE Joint International Research Laboratory of Animal Health and Food Safty, Key Laboratory of Animal Physiology and Biochemistry, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, China; [email protected] (B.L.); [email protected] (Z.W.); [email protected] (Z.W.); [email protected] (J.Z.); [email protected] (Y.X.) 2 Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai 200241, China; [email protected] 3 Biotechnology and Ecology Institute, Ministry of Science and Technology (MOST), Vientiane 22797, Laos; [email protected] * Correspondence: [email protected]; Fax: +86-25-8439-8669 These authors contributed equally to this work. y Received: 6 January 2020; Accepted: 19 February 2020; Published: 21 February 2020 Abstract: Mastitis caused by Streptococcus uberis (S. uberis) is a common and difficult-to-cure clinical disease in dairy cows. In this study, the role of Toll-like receptors (TLRs) and TLR-mediated signaling pathways in mastitis caused by S. uberis was investigated using mouse models and mammary / epithelial cells (MECs). We used S. uberis to infect mammary glands of wild type, TLR2− − and / TLR4− − mice and quantified the adaptor molecules in TLR signaling pathways, proinflammatory cytokines, tissue damage, and bacterial count. When compared with TLR4 deficiency, TLR2 deficiency induced more severe pathological changes through myeloid differentiation primary response 88 (MyD88)-mediated signaling pathways during S. -
Understanding ACAD9 Function and the Physiologic Consequences of Its Deficiency
Title Page Understanding ACAD9 Function and the Physiologic Consequences of its Deficiency by Andrew Guelde Sinsheimer BA, Oberlin College, 2008 Submitted to the Graduate Faculty of the Department of Human Genetics Graduate School of Public Health in partial fulfillment of the requirements for the degree of Doctor of Philosophy University of Pittsburgh 2019 Committee Membership Page UNIVERSITY OF PITTSBURGH GRADUATE SCHOOL OF PUBLIC HEALTH This dissertation was presented by Andrew Guelde Sinsheimer It was defended on April 23, 2019 and approved by David Finegold, MD, Professor, Human Genetics, Graduate School of Public Health, University of Pittsburgh Eric S. Goetzman, PhD. Associate Professor, Human Genetics, Graduate School of Public Health, University of Pittsburgh Candace Kammerer, PhD, Associate Professor, Human Genetics, Graduate School of Public Health, University of Pittsburgh Dissertation Advisor: Jerry Vockley, MD, PhD, Professor, Human Genetics, Graduate School of Public Health, University of Pittsburgh ii Copyright © by Andrew Guelde Sinsheimer 2019 iii Abstract Jerry Vockley, MD, PhD Understanding ACAD9 Function and the Physiologic Consequences of its Deficiency Andrew Guelde Sinsheimer, PhD University of Pittsburgh, 2019 Abstract Acyl CoA Dehydrogenase 9 (ACAD9) is a member of the family of flavoenzymes that catalyze the dehydrogenation of Acyl-CoAs to 2,3 enoyl-CoAs in mitochondrial fatty acid oxidation (FAO). Inborn errors of metabolism of nearly all family members, including ACAD9, have been described in humans, and represent significant causes of morbidity and mortality particularly in children. ACAD9 deficiency leads to a combined defect in fatty acid oxidation and oxidative phosphorylation (OXPHOS) due to a duel role in the pathways. In addition to its function in mitochondrial FAO, ACAD9 has been shown to have a second function as one of 14 factors responsible for assembly of complex I of the electron transport chain (ETC). -
Ecsit Is Required for Bmp Signaling and Mesoderm Formation During Mouse Embryogenesis
Downloaded from genesdev.cshlp.org on September 30, 2021 - Published by Cold Spring Harbor Laboratory Press Ecsit is required for Bmp signaling and mesoderm formation during mouse embryogenesis Changchun Xiao,1 Jae-hyuck Shim,1,6 Michael Klüppel,5,6 Samuel Shao-Min Zhang,3,6 Chen Dong,1,7 Richard A. Flavell,1 Xin-Yuan Fu,3 Jeffrey L. Wrana,5 Brigid L.M. Hogan,4 and Sankar Ghosh1,2,8 1Section of Immunobiology, 2Department of Molecular Biophysics and Biochemistry, Howard Hughes Medical Institute, and 3Department of Pathology, Yale University School of Medicine, New Haven, Connecticut 06520, USA; 4Department of Cell Biology, Duke University Medical Center, Durham, North Carolina 27710, USA; 5Programme in Molecular Biology and Cancer, Samuel Lunenfeld Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada Bone morphogenetic proteins (Bmps) are members of the transforming growth factor  (TGF) superfamily that play critical roles during mouse embryogenesis. Signaling by Bmp receptors is mediated mainly by Smad proteins. In this study, we show that a targeted null mutation of Ecsit, encoding a signaling intermediate of the Toll pathway, leads to reduced cell proliferation, altered epiblast patterning, impairment of mesoderm formation, and embryonic lethality at embryonic day 7.5 (E7.5), phenotypes that mimic the Bmp receptor type1a (Bmpr1a) null mutant. In addition, specific Bmp target gene expression is abolished in the absence of Ecsit. Biochemical analysis demonstrates that Ecsit associates constitutively with Smad4 and associates with Smad1 in a Bmp-inducible manner. Together with Smad1 and Smad4, Ecsit binds to the promoter of specific Bmp target genes. Finally, knock-down of Ecsit with Ecsit-specific short hairpin RNA inhibits both Bmp and Toll signaling. -
Mitochondrial Medicine in the Omics Era
Mitochondrial Medicine in the Omics Era Joyeeta Rahman1 and Shamima Rahman1,2* 1 Mitochondrial Research Group, UCL Great Ormond Street Institute of Child Health and 2 Metabolic Unit, Great Ormond Street Hospital NHS Foundation Trust, London, UK *Correspondence to: Professor Shamima Rahman Mitochondrial Research Group Genetics and Genomic Medicine UCL Great Ormond Street Institute of Child Health London WC1N 1EH, UK. Telephone: +44 (0)2079052608 [email protected] Keywords: Mitochondrial disease, OXPHOS, signalling, omics, genomics, transcriptomics, proteomics, metabolomics, mitochondrial stress response, treatment 1 Abstract Mitochondria are dynamic bioenergetic organelles whose maintenance requires ~1500 proteins from two genomes. Mutations in either the mitochondrial or nuclear genome can disrupt a plethora of cellular metabolic and homeostatic functions. Mitochondrial diseases represent one the most common and severe groups of inherited genetic disorders, characterised by clinical, biochemical, and genetic heterogeneity, diagnostic odysseys, and lack of curative therapies. This review aims to discuss recent advances in mitochondrial biology and medicine arising from widespread utilisation of high-throughput omics technologies, and also includes a broad discussion of emerging therapies for mitochondrial disease. New insights into both bioenergetic and biosynthetic mitochondrial functionalities have expedited the genetic diagnosis of primary mitochondrial disorders, and identified novel mitochondrial pathomechanisms and new targets -
TMEM126B (BC017574) Human Untagged Clone – SC105901
OriGene Technologies, Inc. 9620 Medical Center Drive, Ste 200 Rockville, MD 20850, US Phone: +1-888-267-4436 [email protected] EU: [email protected] CN: [email protected] Product datasheet for SC105901 TMEM126B (BC017574) Human Untagged Clone Product data: Product Type: Expression Plasmids Product Name: TMEM126B (BC017574) Human Untagged Clone Tag: Tag Free Symbol: TMEM126B Synonyms: HT007; MGC111203; transmembrane protein 126B Vector: pCMV6-XL5 E. coli Selection: Ampicillin (100 ug/mL) Cell Selection: None Fully Sequenced ORF: >NCBI ORF sequence for BC017574, the custom clone sequence may differ by one or more nucleotides ATGGCAGCATCTATGCATGGTCAGCCCAGTCCTTCTCTAGAAGATGCAAAACTCAGAAGACCAATGGTCA TAGAAATCATAGAAAAAAATTTTGACTATCTTAGAAAAGAAATGACACAAAATATATATCAAATGGCGAC ATTTGGAACAACAGCTGGTTTCTCTGGAATATTCTCAAACTTCCTGTTCAGACGCTGCTTCAAGGTTAAA CATGATGCTTTGAAGACATATGCATCATTGGCTACACTTCCATTTTTGTCTACTGTTGTTACTGACAAGC TTTTTGTAATTGATGCTTTGTATTCAGGTGAATTTAAATTCACTAATGTATAA 5' Read Nucleotide >OriGene 5' read for BC017574 unedited Sequence: GTAATACGACTCACTATAGGGCGGCCGCGAATTCGGCACGAGGCCAAAAGGTGGTGTTCG GGTATGAGGCTGGGACTAAGCCAAGGGATTCAGGTGTGGTGCCGGTGGGAACTGAGGAAG CGCCCAAGGAAATGAAACACGATTTCCAAAATGAACTTAATCTTTCATGAGAAACTGAGG ATAGAGATGTCAATAAGCAGCCACTGTTTCCACCTCCCCACCTGAAGAGCTAGGAGGACA ACTACAAAGAGCCTGACTGCCTTCTCGGAATGAGGAGAGAGGAAAACAGCAACAGTATCA GTTTTCAAGATGGCAGCATCTATGCATGGTCAGCCCAGTCCTTCTCTAGAAGATGCAAAA CTCAGAAGACCAATGGTCATAGAAATCATAGAAAAAAATTTTGACTATCTTAGAAAAGAA ATGACACAAAATATATATCAAATGGCGACATTTGGAACAACAGCTGGTTTCTCTGGAATA TTCTCAAACTTCCTGTTCAGACGCTGCTTCAAGGTTAAACATGATGCTTTGAAGACATAT -
6 Signaling and BMP Antagonist Noggin in Prostate Cancer
[CANCER RESEARCH 64, 8276–8284, November 15, 2004] Bone Morphogenetic Protein (BMP)-6 Signaling and BMP Antagonist Noggin in Prostate Cancer Dominik R. Haudenschild, Sabrina M. Palmer, Timothy A. Moseley, Zongbing You, and A. Hari Reddi Center for Tissue Regeneration and Repair, Department of Orthopedic Surgery, School of Medicine, University of California, Davis, Sacramento, California ABSTRACT antagonists has recently been discovered. These are secreted proteins that bind to BMPs and reduce their bioavailability for interactions It has been proposed that the osteoblastic nature of prostate cancer with the BMP receptors. Extracellular BMP antagonists include nog- skeletal metastases is due in part to elevated activity of bone morphoge- gin, follistatin, sclerostatin, chordin, DCR, BMPMER, cerberus, netic proteins (BMPs). BMPs are osteoinductive morphogens, and ele- vated expression of BMP-6 correlates with skeletal metastases of prostate gremlin, DAN, and others (refs. 11–16; reviewed in ref. 17). There are cancer. In this study, we investigated the expression levels of BMPs and several type I and type II receptors that bind to BMPs with different their modulators in prostate, using microarray analysis of cell cultures affinities. BMP activity is also regulated at the cell membrane level by and gene expression. Addition of exogenous BMP-6 to DU-145 prostate receptor antagonists such as BAMBI (18), which acts as a kinase- cancer cell cultures inhibited their growth by up-regulation of several deficient receptor. Intracellularly, the regulation of BMP activity at cyclin-dependent kinase inhibitors such as p21/CIP, p18, and p19. Expres- the signal transduction level is even more complex. There are inhib- sion of noggin, a BMP antagonist, was significantly up-regulated by itory Smads (Smad-6 and Smad-7), as well as inhibitors of inhibitory BMP-6 by microarray analysis and was confirmed by quantitative reverse Smads (AMSH and Arkadia). -
Dynamics of Human Mitochondrial Complex I Assembly: Implications for Neurodegenerative Diseases
REVIEW published: 22 August 2016 doi: 10.3389/fmolb.2016.00043 Dynamics of Human Mitochondrial Complex I Assembly: Implications for Neurodegenerative Diseases Gabriele Giachin, Romain Bouverot, Samira Acajjaoui, Serena Pantalone and Montserrat Soler-López * Structural Biology Group, European Synchrotron Radiation Facility, Grenoble, France Neurons are extremely energy demanding cells and highly dependent on the mitochondrial oxidative phosphorylation (OXPHOS) system. Mitochondria generate the energetic potential via the respiratory complexes I to IV, which constitute the electron transport chain (ETC), together with complex V. These redox reactions release energy in the form of ATP and also generate reactive oxygen species (ROS) that are involved in cell signaling but can eventually lead to oxidative stress. Complex I (CI or NADH:ubiquinone oxidoreductase) is the largest ETC enzyme, containing 44 subunits and the main contributor to ROS production. In recent years, the structure of the CI has become available and has provided new insights into CI assembly. A number of chaperones have been identified in the assembly and stability of the mature holo-CI, although they are Edited by: not part of its final structure. Interestingly, CI dysfunction is the most common OXPHOS Luca Mollica, disorder in humans and defects in the CI assembly process are often observed. However, Italian Institute of Technology, Italy the dynamics of the events leading to CI biogenesis remain elusive, which precludes our Reviewed by: understanding of how ETC malfunctioning affects neuronal integrity. Here, we review Revati Wani, Pfizer, USA the current knowledge of the structural features of CI and its assembly factors and the Trevor P. Creamer, potential role of CI misassembly in human disorders such as Complex I Deficiencies or University of Kentucky, USA Alzheimer’s and Parkinson’s diseases. -
Complexome Profiling Identifies TMEM126B As a Component of The
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Cell Metabolism Resource Complexome Profiling Identifies TMEM126B as a Component of the Mitochondrial Complex I Assembly Complex Heinrich Heide,1,6 Lea Bleier,1,6 Mirco Steger,1 Jo¨ rg Ackermann,2 Stefan Dro¨ se,1 Bettina Schwamb,3 Martin Zo¨ rnig,3 Andreas S. Reichert,4,5 Ina Koch,2 Ilka Wittig,1,* and Ulrich Brandt1,* 1Molecular Bioenergetics Group, Medical School, Cluster of Excellence Frankfurt ‘‘Macromolecular Complexes,’’ Goethe University, Theodor-Stern-Kai 7, 60590 Frankfurt am Main, Germany 2Molecular Bioinformatics Group, Institute of Computer Science, Faculty of Computer Science and Mathematics, Robert-Mayer-Straße 11–15, 60325 Frankfurt am Main, Germany 3Chemotherapeutisches Forschungsinstitut Georg-Speyer-Haus, Paul-Ehrlich-Straße 42–44, 60596 Frankfurt am Main, Germany 4Mitochondrial Biology, Buchmann Institute for Molecular Life Sciences, Goethe University Frankfurt am Main, Max-von-Laue-Straße 15, 60438 Frankfurt am Main, Germany 5Mitochondriale Biologie, Zentrum fu¨ r Molekulare Medizin, Goethe Universita¨ t Frankfurt am Main, Max-von-Laue-Straße 15, 60438 Frankfurt am Main, Germany 6These authors contributed equally to this work *Correspondence: [email protected] (I.W.), [email protected] (U.B.) http://dx.doi.org/10.1016/j.cmet.2012.08.009 SUMMARY Immunoprecipitation or tandem affinity protocols in combina- tion with western blotting and mass spectrometry are widely Macromolecular complexes are essential players used to identify interaction partners of specific proteins. How- in numerous biological processes. They are often ever, these approaches are limited to a selected subset of large, dynamic, and rather labile; approaches to the cellular interactome and provide hardly any insight into study them are scarce.