Stygofauna from Cape Range Peninsula, Western Australia: Tethyan Relicts
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A Classification of Living and Fossil Genera of Decapod Crustaceans
RAFFLES BULLETIN OF ZOOLOGY 2009 Supplement No. 21: 1–109 Date of Publication: 15 Sep.2009 © National University of Singapore A CLASSIFICATION OF LIVING AND FOSSIL GENERA OF DECAPOD CRUSTACEANS Sammy De Grave1, N. Dean Pentcheff 2, Shane T. Ahyong3, Tin-Yam Chan4, Keith A. Crandall5, Peter C. Dworschak6, Darryl L. Felder7, Rodney M. Feldmann8, Charles H. J. M. Fransen9, Laura Y. D. Goulding1, Rafael Lemaitre10, Martyn E. Y. Low11, Joel W. Martin2, Peter K. L. Ng11, Carrie E. Schweitzer12, S. H. Tan11, Dale Tshudy13, Regina Wetzer2 1Oxford University Museum of Natural History, Parks Road, Oxford, OX1 3PW, United Kingdom [email protected] [email protected] 2Natural History Museum of Los Angeles County, 900 Exposition Blvd., Los Angeles, CA 90007 United States of America [email protected] [email protected] [email protected] 3Marine Biodiversity and Biosecurity, NIWA, Private Bag 14901, Kilbirnie Wellington, New Zealand [email protected] 4Institute of Marine Biology, National Taiwan Ocean University, Keelung 20224, Taiwan, Republic of China [email protected] 5Department of Biology and Monte L. Bean Life Science Museum, Brigham Young University, Provo, UT 84602 United States of America [email protected] 6Dritte Zoologische Abteilung, Naturhistorisches Museum, Wien, Austria [email protected] 7Department of Biology, University of Louisiana, Lafayette, LA 70504 United States of America [email protected] 8Department of Geology, Kent State University, Kent, OH 44242 United States of America [email protected] 9Nationaal Natuurhistorisch Museum, P. O. Box 9517, 2300 RA Leiden, The Netherlands [email protected] 10Invertebrate Zoology, Smithsonian Institution, National Museum of Natural History, 10th and Constitution Avenue, Washington, DC 20560 United States of America [email protected] 11Department of Biological Sciences, National University of Singapore, Science Drive 4, Singapore 117543 [email protected] [email protected] [email protected] 12Department of Geology, Kent State University Stark Campus, 6000 Frank Ave. -
Anchialine Cave Biology in the Era of Speleogenomics Jorge L
International Journal of Speleology 45 (2) 149-170 Tampa, FL (USA) May 2016 Available online at scholarcommons.usf.edu/ijs International Journal of Speleology Off icial Journal of Union Internationale de Spéléologie Life in the Underworld: Anchialine cave biology in the era of speleogenomics Jorge L. Pérez-Moreno1*, Thomas M. Iliffe2, and Heather D. Bracken-Grissom1 1Department of Biological Sciences, Florida International University, Biscayne Bay Campus, North Miami FL 33181, USA 2Department of Marine Biology, Texas A&M University at Galveston, Galveston, TX 77553, USA Abstract: Anchialine caves contain haline bodies of water with underground connections to the ocean and limited exposure to open air. Despite being found on islands and peninsular coastlines around the world, the isolation of anchialine systems has facilitated the evolution of high levels of endemism among their inhabitants. The unique characteristics of anchialine caves and of their predominantly crustacean biodiversity nominate them as particularly interesting study subjects for evolutionary biology. However, there is presently a distinct scarcity of modern molecular methods being employed in the study of anchialine cave ecosystems. The use of current and emerging molecular techniques, e.g., next-generation sequencing (NGS), bestows an exceptional opportunity to answer a variety of long-standing questions pertaining to the realms of speciation, biogeography, population genetics, and evolution, as well as the emergence of extraordinary morphological and physiological adaptations to these unique environments. The integration of NGS methodologies with traditional taxonomic and ecological methods will help elucidate the unique characteristics and evolutionary history of anchialine cave fauna, and thus the significance of their conservation in face of current and future anthropogenic threats. -
§4-71-6.5 LIST of CONDITIONALLY APPROVED ANIMALS November
§4-71-6.5 LIST OF CONDITIONALLY APPROVED ANIMALS November 28, 2006 SCIENTIFIC NAME COMMON NAME INVERTEBRATES PHYLUM Annelida CLASS Oligochaeta ORDER Plesiopora FAMILY Tubificidae Tubifex (all species in genus) worm, tubifex PHYLUM Arthropoda CLASS Crustacea ORDER Anostraca FAMILY Artemiidae Artemia (all species in genus) shrimp, brine ORDER Cladocera FAMILY Daphnidae Daphnia (all species in genus) flea, water ORDER Decapoda FAMILY Atelecyclidae Erimacrus isenbeckii crab, horsehair FAMILY Cancridae Cancer antennarius crab, California rock Cancer anthonyi crab, yellowstone Cancer borealis crab, Jonah Cancer magister crab, dungeness Cancer productus crab, rock (red) FAMILY Geryonidae Geryon affinis crab, golden FAMILY Lithodidae Paralithodes camtschatica crab, Alaskan king FAMILY Majidae Chionocetes bairdi crab, snow Chionocetes opilio crab, snow 1 CONDITIONAL ANIMAL LIST §4-71-6.5 SCIENTIFIC NAME COMMON NAME Chionocetes tanneri crab, snow FAMILY Nephropidae Homarus (all species in genus) lobster, true FAMILY Palaemonidae Macrobrachium lar shrimp, freshwater Macrobrachium rosenbergi prawn, giant long-legged FAMILY Palinuridae Jasus (all species in genus) crayfish, saltwater; lobster Panulirus argus lobster, Atlantic spiny Panulirus longipes femoristriga crayfish, saltwater Panulirus pencillatus lobster, spiny FAMILY Portunidae Callinectes sapidus crab, blue Scylla serrata crab, Samoan; serrate, swimming FAMILY Raninidae Ranina ranina crab, spanner; red frog, Hawaiian CLASS Insecta ORDER Coleoptera FAMILY Tenebrionidae Tenebrio molitor mealworm, -
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Records ofthc ¥Yestelll AlIstral/{1Il MlIsclIlIl19: 4h9-472 (1999) Short communication The distribution of Australian cave fishes W.F. Humphreys Museum of Natural Science, Western Australian Museum, Francis Street, Perth, Western Australia hOOD, Australia INTRODUCTION Barrow Island stygofauna have been sampled Worldwide only 84 species of fish are known to widely (W.F. Humphreys, unpublished). occur in hypogean waters with 13 instances of two The number of sites from which M. veritas has species and three instances of three species been recorded has increased steadily over time occurring in sympatry (Proudlove 1997; G.S. (Table 1: bottom line) and there is still an upward Proudlove, pers. comm. 1999). Two species of blind trend in comparable data for O. candidum. However, cave fish are known from Australia, namely the a number of access sites have been lost in the Blind Gudgeon, Milyeringa veritas Whitely, 1945 interval from infilling (Table 1; C361, AB5, Site D), (Perciformes: Gobiidae) and the Cave Eel, drying (C-282, C-362) or siltation (C-23), and a Ophisternon candidum (Mees, 1962) (Synbranch number of sites are close to planned developments iformes: Synbranchidae). They are found in (C25, AB5), are within periurban areas (C23, C27, sympatry on the Cape Range peninsula of C105, C282, C361, C-452, C-495, WC 15, WC 44), northwestern Australia. Both species are listed as or in an unmanaged military area (C28, C506, C endangered under Western Australian fauna 507). While there has been a significant extension of legislation. This note presents the known occurrence the range of M. veritas to Barrow Island, the of these cave fishes and includes a major range inclusive known range of the two species on the extension of M. -
Decapod Crustacean Phylogenetics
CRUSTACEAN ISSUES ] 3 II %. m Decapod Crustacean Phylogenetics edited by Joel W. Martin, Keith A. Crandall, and Darryl L. Felder £\ CRC Press J Taylor & Francis Group Decapod Crustacean Phylogenetics Edited by Joel W. Martin Natural History Museum of L. A. County Los Angeles, California, U.S.A. KeithA.Crandall Brigham Young University Provo,Utah,U.S.A. Darryl L. Felder University of Louisiana Lafayette, Louisiana, U. S. A. CRC Press is an imprint of the Taylor & Francis Croup, an informa business CRC Press Taylor & Francis Group 6000 Broken Sound Parkway NW, Suite 300 Boca Raton, Fl. 33487 2742 <r) 2009 by Taylor & Francis Group, I.I.G CRC Press is an imprint of 'Taylor & Francis Group, an In forma business No claim to original U.S. Government works Printed in the United States of America on acid-free paper 109 8765 43 21 International Standard Book Number-13: 978-1-4200-9258-5 (Hardcover) Ibis book contains information obtained from authentic and highly regarded sources. Reasonable efforts have been made to publish reliable data and information, but the author and publisher cannot assume responsibility for the valid ity of all materials or the consequences of their use. The authors and publishers have attempted to trace the copyright holders of all material reproduced in this publication and apologize to copyright holders if permission to publish in this form has not been obtained. If any copyright material has not been acknowledged please write and let us know so we may rectify in any future reprint. Except as permitted under U.S. Copyright Faw, no part of this book maybe reprinted, reproduced, transmitted, or uti lized in any form by any electronic, mechanical, or other means, now known or hereafter invented, including photocopy ing, microfilming, and recording, or in any information storage or retrieval system, without written permission from the publishers. -
Perspectives on Typhlatya (Crustacea, Decapoda)
Contributions to Zoology, 65 (2) 79-99 (1995) SPB Academic Publishing bv, Amsterdam New perspectives on the evolution of the genus Typhlatya (Crustacea, Decapoda): first record of a cavernicolous atyid in the Iberian Peninsula, Typhlatya miravetensis n. sp. Sebastián Sanz & Dirk Platvoet 1 Unitat d'Ecologia, Facultat de Ciències Biologiques, Universitat de Valencia, E-46100 Burjassot, 2 Valencia, Spain; Institutefor Systematics and Population Biology (Zoological Museum, Amsterdam), University of Amsterdam, P.O. Box 94766, 1090 GT Amsterdam, The Netherlands Keywords: Typhlatya, Decapoda, Spain, subterranean waters, systematics, zoogeography, vicariance, evolution, key to genus Abstract historia geológica de la zona y la distribución mundial del género, del grupo de géneros, y la familia. On several occasions, shrimps belonging to a new species ofthe genus Typhlatya were collected in a cave in the province of Castellón, Spain. This is the first record of the in the genus Introduction Iberian Peninsula. The species is described and the validity, dis- tribution, and zoogeography of the genus, as well as the status In 1993 and were on several of the discussed. 1994, shrimps caught genus Spelaeocaris, are Former models for the occasions in in the evolution of the genus Typhlatya and its genus group are re- a cave near Cabanes, province viewed, as well asthe system ofinner classification of the Atyidae of Castellón, eastern Spain. The specimens belong and its For the and evolution of biogeographical meaning. age the to genus Typhlatya Creaser, 1936, a genus the genus we developed a new model based on vicariance prin- with members known from the Galápagos Islands, ciples that involves further evolution of each species after the Ascension and the Caribbean of the ancestral This allows estimations Island, Bermuda, disruption range. -
Stygofauna Survey – Exmouth Cape Aquifer: Scoping Document Describing Work Required to Determine Ecological Water Requirements for the Exmouth Cape Aquifer
Stygofauna Survey – Exmouth Cape Aquifer: Scoping Document Describing Work Required to Determine Ecological Water Requirements for the Exmouth Cape Aquifer Prepared for Department of Water by Bennelongia Pty Ltd April 2008 Report 2008/09 Bennelongia Pty Ltd Exmouth Cape Aquifer Stygofauna EWRs Stygofauna Survey – Exmouth Cape Aquifer: Scoping Document Describing Work Required to Determine Ecological Water Requirements for the Exmouth Cape Aquifer Bennelongia Pty Ltd 64 Jersey Street Jolimont WA 6913 www.bennelongia.com.au ACN 124 110 167 April 2008 Report 2008/09 i Bennelongia Pty Ltd Exmouth Cape Aquifer Stygofauna EWRs LIMITATION: This review has been prepared for use by the Department of Water and its agents. Bennelongia accepts no liability or responsibility in respect of any use or reliance on the review by any third party. Bennelongia has not attempted to verify the accuracy and completeness of all information supplied by the Department of Water. COPYRIGHT: The document has been prepared to the requirements of the Department of Water. Copyright and any other Intellectual Property associated with the document belong to Bennelongia and may not be reproduced without written permission of the Department of Water or Bennelongia. Client – Department of Water Report Version Prepared by Checked by Submitted to Client Method Date Draft report Vers. 1 Stuart Halse email 8.iv.08 Vers. 2 Stuart Halse email 10.iv.08 Vers. 3 Stuart Halse email 26.v.08 Final report Stuart Halse email 2.vii.08 K:/Projects/DoW_01/Report/BEC_Exmouth_EWRs_29vii08 ii Bennelongia Pty Ltd Exmouth Cape Aquifer Stygofauna EWRs Executive Summary Water resources on the Exmouth peninsula are very limited and future expansion of the Exmouth townsite will place considerable pressure on potable water supplies. -
The First Record of a Trans-Oceanic Sister-Group Relationship Between Obligate Vertebrate Troglobites
The First Record of a Trans-Oceanic Sister-Group Relationship between Obligate Vertebrate Troglobites Prosanta Chakrabarty1*, Matthew P. Davis2, John S. Sparks3 1 Louisiana State University, Museum of Natural Science, Department of Biological Sciences, Baton Rouge, Louisiana, United States of America, 2 The Field Museum, Department of Zoology, Chicago, Illinois, United States of America, 3 American Museum of Natural History, Department of Ichthyology, Division of Vertebrate Zoology, New York, New York, United States of America Abstract We show using the most complete phylogeny of one of the most species-rich orders of vertebrates (Gobiiformes), and calibrations from the rich fossil record of teleost fishes, that the genus Typhleotris, endemic to subterranean karst habitats in southwestern Madagascar, is the sister group to Milyeringa, endemic to similar subterranean systems in northwestern Australia. Both groups are eyeless, and our phylogenetic and biogeographic results show that these obligate cave fishes now found on opposite ends of the Indian Ocean (separated by nearly 7,000 km) are each others closest relatives and owe their origins to the break up of the southern supercontinent, Gondwana, at the end of the Cretaceous period. Trans-oceanic sister-group relationships are otherwise unknown between blind, cave-adapted vertebrates and our results provide an extraordinary case of Gondwanan vicariance. Citation: Chakrabarty P, Davis MP, Sparks JS (2012) The First Record of a Trans-Oceanic Sister-Group Relationship between Obligate Vertebrate Troglobites. PLoS ONE 7(8): e44083. doi:10.1371/journal.pone.0044083 Editor: Michael Schubert, Ecole Normale Supe´rieure de Lyon, France Received January 10, 2012; Accepted July 31, 2012; Published August 28, 2012 Copyright: ß 2012 Chakrabarty et al. -
Shedding Light on the Diversification of Subterranean Insects.Journal of Biology 2010, 9
Juan and Emerson Journal of Biology 2010, 9:17 http://jbiol.com/content/9/3/17 MINIREVIEW Evolution underground: shedding light on the diversification of subterranean insects Carlos Juan*1 and Brent C Emerson2 See research article http://www.biomedcentral.com/1471-2148/10/29 Abstract explanation [2]. Mirroring this debate, both the development of a topographic or ecological barrier A recent study in BMC Evolutionary Biology has resulting in the separation of a once continuously reconstructed the molecular phylogeny of a large distributed ancestral population or species into separate Mediterranean cave-dwelling beetle clade, revealing populations (vicariance) and dispersal, have been an ancient origin and strong geographic structuring. discussed as contrasting factors shaping subterranean It seems likely that diversication of this clade in the animal distributions. Vicariance is typically considered Oligocene was seeded by an ancestor already adapted the dominant of these two processes, as subterranean to subterranean life. species have very limited dispersal potential, particularly in ecologically unsuitable areas [4]. Testing hypotheses of origin and adaptation among Cave organisms have long been considered a model subterranean taxa has been hindered by the inherent system for testing evolutionary and biogeographic hypo- difficulties of sampling the rare and more elusive cave theses because of their isolation, simplicity of community taxa and extensive morphological convergence caused by structure and specialization. Adaptation to cave environ- strong selection pressures imposed by the subterranean ments promotes the regression of functionless (unused) environment [4]. In recent years molecular phylogenies characters across a broad taxonomic range, in concert have been obtained for numerous taxonomic groups with evolutionary change in other morphological traits. -
The Subterranean Fauna of Barrow Island, North-Western Australia: 10 Years On
RECORDS OF THE WESTERN AUSTRALIAN MUSEUM 83 145–158 (2013) SUPPLEMENT The subterranean fauna of Barrow Island, north-western Australia: 10 years on Garth Humphreys1,2,3,8, Jason Alexander1, Mark S. Harvey2,3,4,5,6 and William F. Humphreys2,3,7 1 Biota Environmental Sciences Pty Ltd, PO Box 155, Leederville, Western Australia 6903, Australia. 2 Department of Terrestrial Zoology, Western Australian Museum, Locked Bag 49, Welshpool DC, Western Australia 6986, Australia. 3 School of Animal Biology, University of Western Australia, Crawley, Western Australia 6009, Australia. 4 Division of Invertebrate Zoology, American Museum of Natural History, 79th Street at Central Park West, New York, New York 10024-5192, U.S.A. 5 Department of Entomology, California Academy of Sciences, Golden Gate Park, San Francisco, CA 94103-3009, U.S.A. 6 School of Natural Sciences, Edith Cowan University, Joondalup, Western Australia 6009, Australia. 7 School of Earth and Environmental Sciences, University of Adelaide, South Australia 5005, Australia 8 Corresponding author: Email: [email protected] ABSTRACT – Barrow Island, situated off the north-west Australian coast, is well recognised for its subterranean fauna values. Sampling for both stygobitic and troglobitic fauna has taken place on the island since 1991, and Humphreys (2001) summarised the then current state of knowledge of the island’s subterranean fauna. Sampling for impact assessment purposes on the island over the past decade has substantially increased the recorded species richness of Barrow Island. The number of documented stygal taxa has more than doubled since 2001, from 25 to 63 species now known. Troglobitic diversity has also substantially increased, with six species known in 2001 and 19 troglobitic taxa known today. -
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The significance of the subterranean fauna in biogeographical reconstruction: examples from Cape Range peninsula, Western Australia W. F. Humphreys Western Australian Museum, Franeis Street, Perth, WA 6000, Australia. Abstract Cape Range peninsula contains a diverse troglobite (obligatory cave inhabitants) fauna, the only rich troglobite community known in Western Australia and in the semi-arid tropics. At least thirty- eight species of troglobite (or stygobiont) in this sparsely sampled area place it amongst the worlds faunistically diverse karst areas. The characteristics of the region and its subterranean fauna are broadly examined in this paper. The area (with Barrow Island) has high generic endemism with c. 14 apparently endemic genera including amphipods, shrimps, snails, millipedes, schizomids, spiders, archaeognaths, thysanurans and fish. In the context of cave biology the communities are not simple with up to seven troglobites occupying a single cave, together with many other speeies lacking such overt modification to cave life but seemingly out of place in a semi-arid climate. The affinities of the fauna are varied but a large element of the terrestrial fauna is derived from the humid tropics and is relietual from times when humid forest covered this region. lbe cave systems in Cape Range are fossil and were clearly formed under more humid conditions, as evidenced by the cave fauna Stalagmite growth has been extraordinary slow, suggesting that the climate was not been substantially wetter than at present over the la-., 170,000 years. Hence, the climate required for cave formation and forest cover predates this. However, sympatric congenors both in the range and on the coastal plain suggest that climatic/eustatic fluctuations have led to fragmentation and rejoining of populations. -
Distribution Patterns, Carbon Sources and Niche Partitioning in Cave Shrimps (Atyidae: Typhlatya) E
www.nature.com/scientificreports OPEN Distribution patterns, carbon sources and niche partitioning in cave shrimps (Atyidae: Typhlatya) E. M. Chávez‑Solís1,2, C. Solís3, N. Simões2,4,5 & M. Mascaró2,4* Cave shrimps of the Typhlatya genus are common and widespread in fresh, brackish and marine groundwater throughout the Yucatan Peninsula (Mexico). These species are ideal models to test niche partitioning within sympatric species in oligotrophic systems. Nevertheless, their food sources remain unidentifed, and despite their frequency and functional importance, distribution and abundance patterns of these species within caves have not been fully recognized. Here, we describe the abundance of three Typhlatya species in diferent temporal and spatial scales, investigate changes in water conditions, and potential sources of carbon as an indication of food origin. Species composition and abundance varied markedly in space and time revealing patterns that difered from one system to another and in relation to environmental parameters. Isotope analysis showed that each species refects a particular δ13C and Δ14C fngerprint, suggesting they feed in diferent proportions from the available carbon sources. Overall, our fndings suggest a niche partitioning of habitat and feeding sources amongst the three Typhlatya species investigated, where environmental characteristics and physiological diferences could play an important role governing their distribution patterns. Te lack of photosynthesis in caves and the resulting limitation in food sources is one of the strongest selection pressures and drivers of evolution for life in caves1. Competition for nutrients in oligotrophic environments, such as anchialine ecosystems—defned as subterranean estuaries that extend inland to the limit of seawater penetration2, certainly requires a unique set of specialization traits that allow for niche partitioning amongst stygobionts (aquatic species strictly bound to the subterranean habitat).