Chapter 15, the Mistaken Extinction, by Lowell Dingus and Timothy Rowe, New York, W
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Ecological Correlates of Ghost Lineages in Ruminants
Paleobiology, 38(1), 2012, pp. 101–111 Ecological correlates of ghost lineages in ruminants Juan L. Cantalapiedra, Manuel Herna´ndez Ferna´ndez, Gema M. Alcalde, Beatriz Azanza, Daniel DeMiguel, and Jorge Morales Abstract.—Integration between phylogenetic systematics and paleontological data has proved to be an effective method for identifying periods that lack fossil evidence in the evolutionary history of clades. In this study we aim to analyze whether there is any correlation between various ecomorphological variables and the duration of these underrepresented portions of lineages, which we call ghost lineages for simplicity, in ruminants. Analyses within phylogenetic (Generalized Estimating Equations) and non-phylogenetic (ANOVAs and Pearson correlations) frameworks were performed on the whole phylogeny of this suborder of Cetartiodactyla (Mammalia). This is the first time ghost lineages are focused in this way. To test the robustness of our data, we compared the magnitude of ghost lineages among different continents and among phylogenies pruned at different ages (4, 8, 12, 16, and 20 Ma). Differences in mean ghost lineage were not significantly related to either geographic or temporal factors. Our results indicate that the proportion of the known fossil record in ruminants appears to be influenced by the preservation potential of the bone remains in different environments. Furthermore, large geographical ranges of species increase the likelihood of preservation. Juan L. Cantalapiedra, Gema Alcalde, and Jorge Morales. Departamento de Paleobiologı´a, Museo Nacional de Ciencias Naturales, UCM-CSIC, Pinar 25, 28006 Madrid, Spain. E-mail: [email protected] Manuel Herna´ndez Ferna´ndez. Departamento de Paleontologı´a, Facultad de Ciencias Geolo´gicas, Universidad Complutense de Madrid y Departamento de Cambio Medioambiental, Instituto de Geociencias, Consejo Superior de Investigaciones Cientı´ficas, Jose´ Antonio Novais 2, 28040 Madrid, Spain Daniel DeMiguel. -
Population Genomic Analysis Reveals That Homoploid Hybrid Speciation Can Speciation Hybrid Homoploid Reveals That Analysis Genomic Population E Origin
PROF. YONGSHUAI SUN (Orcid ID : 0000-0002-6926-8406) PROF. JIANQUAN LIU (Orcid ID : 0000-0002-4237-7418) Population genomic analysis reveals that homoploid hybrid speciation can be a lengthy process Dafu Ru1 *, Yongshuai Sun1,2*, Donglei Wang1*, Yang Chen1, Tianjing Wang1, Quanjun Hu1, Richard J. Abbott3, Jianquan Liu1# 1Key Laboratory for Bio-resource and Eco-environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu 610065, P. R. China 2CAS Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla 666303, P. R. China 3School of Biology, Mitchell Building, University of St Andrews, St Andrews, Fife KY16 9TH, UK Article *equal contributions to this work; #corresponding author ([email protected]) Abstract An increasing number of species are thought to have originated by homoploid hybrid speciation (HHS), but in only a handful of cases are details of the process known. A previous study indicated that Picea purpurea, a conifer in the Qinghai-Tibet Plateau (QTP), originated through HHS from P. likiangensis and P. wilsonii. To investigate this origin in more detail we analyzed transcriptome data for 114 individuals collected from 34 populations of the three Picea species from their core distributions in the QTP. Phylogenetic, principal component and admixture analyses of nuclear SNPs showed the species to be delimited genetically and that P. purpurea was admixed with approximately 60% of its ancestry derived from P. wilsonii and 40% from P. likiangensis. Coalescent simulations revealed the best-fitting model of origin involved formation of an intermediate hybrid lineage between P. likiangensis and P. -
Lineages, Splits and Divergence Challenge Whether the Terms Anagenesis and Cladogenesis Are Necessary
Biological Journal of the Linnean Society, 2015, , – . With 2 figures. Lineages, splits and divergence challenge whether the terms anagenesis and cladogenesis are necessary FELIX VAUX*, STEVEN A. TREWICK and MARY MORGAN-RICHARDS Ecology Group, Institute of Agriculture and Environment, Massey University, Palmerston North, New Zealand Received 3 June 2015; revised 22 July 2015; accepted for publication 22 July 2015 Using the framework of evolutionary lineages to separate the process of evolution and classification of species, we observe that ‘anagenesis’ and ‘cladogenesis’ are unnecessary terms. The terms have changed significantly in meaning over time, and current usage is inconsistent and vague across many different disciplines. The most popular definition of cladogenesis is the splitting of evolutionary lineages (cessation of gene flow), whereas anagenesis is evolutionary change between splits. Cladogenesis (and lineage-splitting) is also regularly made synonymous with speciation. This definition is misleading as lineage-splitting is prolific during evolution and because palaeontological studies provide no direct estimate of gene flow. The terms also fail to incorporate speciation without being arbitrary or relative, and the focus upon lineage-splitting ignores the importance of divergence, hybridization, extinction and informative value (i.e. what is helpful to describe as a taxon) for species classification. We conclude and demonstrate that evolution and species diversity can be considered with greater clarity using simpler, more transparent terms than anagenesis and cladogenesis. Describing evolution and taxonomic classification can be straightforward, and there is no need to ‘make words mean so many different things’. © 2015 The Linnean Society of London, Biological Journal of the Linnean Society, 2015, 00, 000–000. -
Miocene Mammal Reveals a Mesozoic Ghost Lineage on Insular New Zealand, Southwest Pacific
Miocene mammal reveals a Mesozoic ghost lineage on insular New Zealand, southwest Pacific Trevor H. Worthy*†, Alan J. D. Tennyson‡, Michael Archer§, Anne M. Musser¶, Suzanne J. Hand§, Craig Jonesʈ, Barry J. Douglas**, James A. McNamara††, and Robin M. D. Beck§ *School of Earth and Environmental Sciences, Darling Building DP 418, Adelaide University, North Terrace, Adelaide 5005, South Australia, Australia; ‡Museum of New Zealand Te Papa Tongarewa, P.O. Box 467, Wellington 6015, New Zealand; §School of Biological, Earth and Environmental Sciences, University of New South Wales, New South Wales 2052, Australia; ¶Australian Museum, 6-8 College Street, Sydney, New South Wales 2010, Australia; ʈInstitute of Geological and Nuclear Sciences, P.O. Box 30368, Lower Hutt 5040, New Zealand; **Douglas Geological Consultants, 14 Jubilee Street, Dunedin 9011, New Zealand; and ††South Australian Museum, Adelaide, South Australia 5000, Australia Edited by James P. Kennett, University of California, Santa Barbara, CA, and approved October 11, 2006 (sent for review July 8, 2006) New Zealand (NZ) has long been upheld as the archetypical Ma) dinosaur material (13) and isolated moa bones from marine example of a land where the biota evolved without nonvolant sediments up to 2.5 Ma (1, 14), the terrestrial record older than terrestrial mammals. Their absence before human arrival is mys- 1 Ma is extremely limited. Until now, there has been no direct terious, because NZ was still attached to East Antarctica in the Early evidence for the pre-Pleistocene presence in NZ of any of its Cretaceous when a variety of terrestrial mammals occupied the endemic vertebrate lineages, particularly any group of terrestrial adjacent Australian portion of Gondwana. -
Microevolution and the Genetics of Populations Microevolution Refers to Varieties Within a Given Type
Chapter 8: Evolution Lesson 8.3: Microevolution and the Genetics of Populations Microevolution refers to varieties within a given type. Change happens within a group, but the descendant is clearly of the same type as the ancestor. This might better be called variation, or adaptation, but the changes are "horizontal" in effect, not "vertical." Such changes might be accomplished by "natural selection," in which a trait within the present variety is selected as the best for a given set of conditions, or accomplished by "artificial selection," such as when dog breeders produce a new breed of dog. Lesson Objectives ● Distinguish what is microevolution and how it affects changes in populations. ● Define gene pool, and explain how to calculate allele frequencies. ● State the Hardy-Weinberg theorem ● Identify the five forces of evolution. Vocabulary ● adaptive radiation ● gene pool ● migration ● allele frequency ● genetic drift ● mutation ● artificial selection ● Hardy-Weinberg theorem ● natural selection ● directional selection ● macroevolution ● population genetics ● disruptive selection ● microevolution ● stabilizing selection ● gene flow Introduction Darwin knew that heritable variations are needed for evolution to occur. However, he knew nothing about Mendel’s laws of genetics. Mendel’s laws were rediscovered in the early 1900s. Only then could scientists fully understand the process of evolution. Microevolution is how individual traits within a population change over time. In order for a population to change, some things must be assumed to be true. In other words, there must be some sort of process happening that causes microevolution. The five ways alleles within a population change over time are natural selection, migration (gene flow), mating, mutations, or genetic drift. -
A Framework for Post-Phylogenetic Systematics
A FRAMEWORK FOR POST-PHYLOGENETIC SYSTEMATICS Richard H. Zander Zetetic Publications, St. Louis Richard H. Zander Missouri Botanical Garden P.O. Box 299 St. Louis, MO 63166 [email protected] Zetetic Publications in St. Louis produces but does not sell this book. Any book dealer can obtain a copy for you through the usual channels. Resellers please contact CreateSpace Independent Publishing Platform of Amazon. ISBN-13: 978-1492220404 ISBN-10: 149222040X © Copyright 2013, all rights reserved. The image on the cover and title page is a stylized dendrogram of paraphyly (see Plate 1.1). This is, in macroevolutionary terms, an ancestral taxon of two (or more) species or of molecular strains of one taxon giving rise to a descendant taxon (unconnected comma) from one ancestral branch. The image on the back cover is a stylized dendrogram of two, genus-level speciational bursts or dis- silience. Here, the dissilient genus is the basic evolutionary unit (see Plate 13.1). This evolutionary model is evident in analysis of the moss Didymodon (Chapter 8) through superoptimization. A super- generative core species with a set of radiative, specialized descendant species in the stylized tree com- promises one genus. In this exemplary image; another genus of similar complexity is generated by the core supergenerative species of the first. TABLE OF CONTENTS Preface..................................................................................................................................................... 1 Acknowledgments.................................................................................................................................. -
Adaptive Radiation Driven by the Interplay of Eco-Evolutionary and Landscape Dynamics R
Adaptive radiation driven by the interplay of eco-evolutionary and landscape dynamics R. Aguilée, D. Claessen, A. Lambert To cite this version: R. Aguilée, D. Claessen, A. Lambert. Adaptive radiation driven by the interplay of eco-evolutionary and landscape dynamics. Evolution - International Journal of Organic Evolution, Wiley, 2013, 67 (5), pp.1291-1306. 10.1111/evo.12008. hal-00838275 HAL Id: hal-00838275 https://hal.archives-ouvertes.fr/hal-00838275 Submitted on 13 Apr 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Adaptive radiation driven by the interplay of eco-evolutionary and landscape dynamics Robin Aguil´eea;b;∗, David Claessenb and Amaury Lambertc;d Published in Evolution, 2013, 67(5): 1291{1306 with doi: 10.1111/evo.12008 a Institut des Sciences de l'Evolution´ de Montpellier (UMR 5554), Univ Montpellier II, CNRS, Montpellier, France b Laboratoire Ecologie´ et Evolution´ (UMR 7625), UPMC Univ Paris 06, Ecole´ Normale Sup´erieure,CNRS, Paris, France c Laboratoire Probabilit´eset Mod`elesAl´eatoires(LPMA) CNRS UMR 7599, UPMC Univ Paris 06, Paris, France. d Center for Interdisciplinary Research in Biology (CIRB) CNRS UMR 7241, Coll`egede France, Paris, France ∗ Corresponding author. -
Onetouch 4.0 Scanned Documents
/ Chapter 2 THE FOSSIL RECORD OF BIRDS Storrs L. Olson Department of Vertebrate Zoology National Museum of Natural History Smithsonian Institution Washington, DC. I. Introduction 80 II. Archaeopteryx 85 III. Early Cretaceous Birds 87 IV. Hesperornithiformes 89 V. Ichthyornithiformes 91 VI. Other Mesozojc Birds 92 VII. Paleognathous Birds 96 A. The Problem of the Origins of Paleognathous Birds 96 B. The Fossil Record of Paleognathous Birds 104 VIII. The "Basal" Land Bird Assemblage 107 A. Opisthocomidae 109 B. Musophagidae 109 C. Cuculidae HO D. Falconidae HI E. Sagittariidae 112 F. Accipitridae 112 G. Pandionidae 114 H. Galliformes 114 1. Family Incertae Sedis Turnicidae 119 J. Columbiformes 119 K. Psittaciforines 120 L. Family Incertae Sedis Zygodactylidae 121 IX. The "Higher" Land Bird Assemblage 122 A. Coliiformes 124 B. Coraciiformes (Including Trogonidae and Galbulae) 124 C. Strigiformes 129 D. Caprimulgiformes 132 E. Apodiformes 134 F. Family Incertae Sedis Trochilidae 135 G. Order Incertae Sedis Bucerotiformes (Including Upupae) 136 H. Piciformes 138 I. Passeriformes 139 X. The Water Bird Assemblage 141 A. Gruiformes 142 B. Family Incertae Sedis Ardeidae 165 79 Avian Biology, Vol. Vlll ISBN 0-12-249408-3 80 STORES L. OLSON C. Family Incertae Sedis Podicipedidae 168 D. Charadriiformes 169 E. Anseriformes 186 F. Ciconiiformes 188 G. Pelecaniformes 192 H. Procellariiformes 208 I. Gaviiformes 212 J. Sphenisciformes 217 XI. Conclusion 217 References 218 I. Introduction Avian paleontology has long been a poor stepsister to its mammalian counterpart, a fact that may be attributed in some measure to an insufRcien- cy of qualified workers and to the absence in birds of heterodont teeth, on which the greater proportion of the fossil record of mammals is founded. -
Adaptive Radiation Adaptive Radiation by Prof
Workshop on Population and Speciation Genomics 2020 W. Salzburger | Adaptive Radiation Adaptive Radiation by Prof. Walter Salzburger Zoological Institute, University of Basel, Vesalgasse 1, 4051 Basel, Switzerland The diversity of life on Earth is governed, at the MACROEVOLUTIONARY scale, by two antagonistic ———————— MACROEVOLUTION processes: Evolutionary radiations increase and extinction events decrease the organismal diversity on our Evolution on the grand scale, that is, planet through time. Evolutionary radiations are termed adaptive radiations if new lifeforms emerge evolution at the level rapidly through the extensive ecological diversification of an organismal lineage. of species and above. Examples of adaptive radiations ECOLOGICAL NICHE The relational position of a species Adaptive radiation refers to the evolution of ecological and morphological disparity within a rapidly or population in an diversifying lineage. It is the diversification of an ancestral species into an array of new species that ecosystem. It includes the interactions of all occupy various ECOLOGICAL NICHES and that differ in traits used to exploit those niches. Adaptive biotic and abiotic radiation includes the origination of both new species (speciation) and phenotypic disparity. factors that determine how a species meets Archetypal examples of adaptive radiations include Darwin’s finches on the Galápagos archipelago; its needs for food and shelter, how it silversword plants on Hawaii; anole lizards on the islands of the Caribbean; threespine stickleback fish survives, and how it in north temperate waters; and cichlid fishes in the East Africa Great Lakes and in various tropical reproduces. crater lakes (see FIGURE 1). Adaptive radiations are also visible in the FOSSIL record. For example, the FOSSIL CAMBRIAN EXPLOSION is considered an adaptive radiation. -
Avian Premaxilla and Tarsometatarsus from The
762 ShortCommunications andCommentaries [Auk,Vol. 112 The Auk 112(3):762-767, 1995 Avian Premaxilla and Tarsometatarsusfrom the Uppermost Cretaceous of Montana ANDRZEJ ELZANOWSKIa AND MICHAEL K. BRETT-$URMAN2 •Departmentof VertebrateZoology, National Museum of NaturalHistory, SmithsonianInstitution, Washington, D.C. 20560, USA; and 2Departmentof Geology,George Washington University, Washington, D.C. 20052,USA Despitea variety of fragmentary,apparently neog- is rounded and smooth,and the sidesare very steep. nathousavian fossilsknown from the uppermostCre- The largest among the neurovascularforamina scat- taceousdeposits (Brodkorb 1963, Olson 1985, Olson tered on each side are two elongatedorsal foramina: and Parris 1987),we still lack even an approximate the vessel from the rostral one coursed rostrad, whereas idea of how many neognathouslineages survived be- the vesselfrom the caudalone apparentlybifurcated yond the Cretaceous/Tertiaryboundary. Most of the into a smaller rostral and a larger caudal branch. In Maastrichtian avian bones reveal a charadriiform or addition, a number of smaller openingsperforates transitional charadriiform-gruiform morphology, eachside of the symphysis. which may be plesiomorphicfor most (Olson 1985) The ventral surfaceof the premaxillarysymphysis but probably not all of the neognaths(Elzanowski is strongly concave(Fig. lc, d). There are no distinct 1995). Other than that, there is some fossil evidence neurovascularforamina on the ventral (palatal) sur- for the existence of loons in the Cretaceous(Olson face,with the possibleexception of one small opening 1992)and mostly indirect evidencefor the pre-Ter- on the left side. The palatal shelvesof the premaxilla tiary origins of the relict pelecaniforms(Phaethon- begin from the symphysialtip and graduallybroaden tidae and Fregatidae) and procellariiforms (Elza- caudally where each of them occupiesone-third of nowski and Gaiton 1991). -
A Loon Leg (Aves, Gaviidae) with Crocodilian Tooth from the Late Oligocene of Germany
A Loon Leg (Aves, Gaviidae) with Crocodilian Tooth from the Late Oligocene of Germany GERALD MAYR1* AND MARKUS POSCHMANN2 1Forschungsinstitut Senckenberg, Sektion Ornithologie, Senckenberganlage 25, D-60325 Frankfurt am Main, Germany 2Generaldirektion Kulturelles Erbe RLP, Direktion Landesarchäologie, Referat Erdgeschichte, Große Langgasse 29, D-55116 Mainz, Germany *Corresponding author; E-mail: [email protected] Abstract.—The first late Oligocene fossil record of a loon (Gaviiformes) is described from the lacustrine depos- its of the German locality Enspel. The specimen is an isolated foot, which is associated with a crocodilian tooth. The fossil belongs to a species about half the size of the smallest extant loon, and is morphologically most similar to the Paleogene taxon Colymboides. In all probability it constitutes the prey remains of a crocodilian, which is of particular significance because the distribution ranges of loons and crocodilians hardly overlap today. The Enspel palaeocli- mate was warm-temperate and subtropical, and the Enspel specimen and other Paleogene fossils of gaviiform birds raise the, as yet, unanswered question of why loons largely disappeared from inland habitats of the warmer regions. Received 22 July 2008, accepted 30 December 2008. Key words.—Colymboides, crocodilian tooth, fossil waterbirds, Gaviiformes, palaeoecology. Waterbirds 32(3): 468-471, 2009 In recent years, the Enspel fossil site anglicus Lydekker, 1891 from late Eocene (Westerwald, Germany) has yielded several lacustrine deposits of England is represent- birds of late Oligocene age (MP 28, i.e. 24.7 ed by a coracoid (the holotype), and a re- million years ago; Mertz et al. 2007). The fos- ferred humerus and frontal portion of the siliferous sediments originated in a small skull (Harrison and Walker 1976). -
Alan Feduccia's Riddle of the Feathered Dragons: What Reptiles
Leigh Evolution: Education and Outreach 2014, 7:9 http://www.evolution-outreach.com/content/7/1/9 BOOK REVIEW Open Access Alan Feduccia’s Riddle of the Feathered Dragons: what reptiles gave rise to birds? Egbert Giles Leigh Jr Riddle of the Feathered Dragons: Hidden Birds of China, properly. This is a great pity, for his story is wonderful: by Alan Feduccia. New Haven, CT: Yale University Press, his birds would have made a far better focus for this 2012. Pp. x + 358. H/b $55.00 book than the dispute. This book’s author is at home in the paleontology, So, what is this dispute that spoiled the book? The anatomy, physiology, and behavior of birds. Who could scientific argument is easily summarized. It started be more qualified to write on their origin and evolution? when a paleontologist from Yale University, John Ostrom, This book is unusually, indeed wonderfully, well and unearthed a 75-kg bipedal theropod dinosaur, Deinonychus, clearly illustrated: its producers cannot be praised too buried 110 million years ago in Montana. Deinonychus highly. It is well worth the while of anyone interested in stood a meter tall, and its tail was 1.5 m long. It was active: bird evolution to read it. Although it offers no answers Ostrom thought that both it and Archaeopteryx,which to ‘where birds came from’, it has God’s plenty of fascin- lived 40 million years earlier, were warm-blooded. Deinony- ating, revealing detail, knit together in powerful criticism chus bore many skeletal resemblances to Archaeopteryx, of prevailing views of bird evolution.