Course Name-Biology and Diversity of Algae, Bryophyta and Pteridophyta (Paper Code: Bot 502)
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Biology and Systematics of Heterokont and Haptophyte Algae1
American Journal of Botany 91(10): 1508±1522. 2004. BIOLOGY AND SYSTEMATICS OF HETEROKONT AND HAPTOPHYTE ALGAE1 ROBERT A. ANDERSEN Bigelow Laboratory for Ocean Sciences, P.O. Box 475, West Boothbay Harbor, Maine 04575 USA In this paper, I review what is currently known of phylogenetic relationships of heterokont and haptophyte algae. Heterokont algae are a monophyletic group that is classi®ed into 17 classes and represents a diverse group of marine, freshwater, and terrestrial algae. Classes are distinguished by morphology, chloroplast pigments, ultrastructural features, and gene sequence data. Electron microscopy and molecular biology have contributed signi®cantly to our understanding of their evolutionary relationships, but even today class relationships are poorly understood. Haptophyte algae are a second monophyletic group that consists of two classes of predominately marine phytoplankton. The closest relatives of the haptophytes are currently unknown, but recent evidence indicates they may be part of a large assemblage (chromalveolates) that includes heterokont algae and other stramenopiles, alveolates, and cryptophytes. Heter- okont and haptophyte algae are important primary producers in aquatic habitats, and they are probably the primary carbon source for petroleum products (crude oil, natural gas). Key words: chromalveolate; chromist; chromophyte; ¯agella; phylogeny; stramenopile; tree of life. Heterokont algae are a monophyletic group that includes all (Phaeophyceae) by Linnaeus (1753), and shortly thereafter, photosynthetic organisms with tripartite tubular hairs on the microscopic chrysophytes (currently 5 Oikomonas, Anthophy- mature ¯agellum (discussed later; also see Wetherbee et al., sa) were described by MuÈller (1773, 1786). The history of 1988, for de®nitions of mature and immature ¯agella), as well heterokont algae was recently discussed in detail (Andersen, as some nonphotosynthetic relatives and some that have sec- 2004), and four distinct periods were identi®ed. -
Morphological and Transcriptomic Evidence for Ammonium Induction of Sexual Reproduction in Thalassiosira Pseudonana and Other Centric Diatoms
RESEARCH ARTICLE Morphological and transcriptomic evidence for ammonium induction of sexual reproduction in Thalassiosira pseudonana and other centric diatoms Eric R. Moore1, Briana S. Bullington1, Alexandra J. Weisberg2, Yuan Jiang3, Jeff Chang2, Kimberly H. Halsey1* 1 Department of Microbiology, Oregon State University, Corvallis, Oregon, United States of America, 2 Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of a1111111111 America, 3 Department of Statistics, Oregon State University, Corvallis, Oregon, United States of America a1111111111 a1111111111 * [email protected] a1111111111 a1111111111 Abstract The reproductive strategy of diatoms includes asexual and sexual phases, but in many spe- cies, including the model centric diatom Thalassiosira pseudonana, sexual reproduction has OPEN ACCESS never been observed. Furthermore, the environmental factors that trigger sexual reproduc- Citation: Moore ER, Bullington BS, Weisberg AJ, tion in diatoms are not understood. Although genome sequences of a few diatoms are avail- Jiang Y, Chang J, Halsey KH (2017) Morphological able, little is known about the molecular basis for sexual reproduction. Here we show that and transcriptomic evidence for ammonium induction of sexual reproduction in Thalassiosira ammonium reliably induces the key sexual morphologies, including oogonia, auxospores, pseudonana and other centric diatoms. PLoS ONE and spermatogonia, in two strains of T. pseudonana, T. weissflogii, and Cyclotella cryptica. 12(7): e0181098. https://doi.org/10.1371/journal. RNA sequencing revealed 1,274 genes whose expression patterns changed when T. pseu- pone.0181098 donana was induced into sexual reproduction by ammonium. Some of the induced genes Editor: Douglas A. Campbell, Mount Allison are linked to meiosis or encode flagellar structures of heterokont and cryptophyte algae. -
Life in the Oceanic Realms
GENERAL ¨ ARTICLE Life in the Oceanic Realms Chandralata Raghukumar The marine environment includes the nutrient-rich coastal waters, relatively nutrient-poor open oceanic waters, coral reef atolls, metal-rich hydrothermal vent fluids with tem- peratures of 200-350oC, cold-seeps, estuaries, mangrove swamps, intertidal beaches and rocky shores. Oceans are home to some of the most diverse and unique life forms. This Chandralata Raghukumar article is an attempt to introduce some of the fundamentals of is an emeritus scientist at biologicaloceanography andmarine biologyto describe life in the National Institute of the sea. Oceanography, Goa. After obtaining a PhD in plant I’dliketobeunderthesea, pathology, she worked for 5 years on fungal diseases In an octopus’s garden in the shade, of marine algae in the We would be warm below the storm, Institute for Marine In our little hideaway beneath the waves, Research, Bremerhaven, We would be so happy, you and me, Germany. At NIO she worked on algal and coral No one there to tell us what to do. pathology and marine fungal biotechnology. Her May this song by the Beatles be an inspiration to a career in major interests are biological oceanography! The general notion about oceanogra- industrially important phy research revolves around scuba diving, killer whales, sharks, enzymes from marine fungi and physiology of giant octopus and lobsters. But the oceans are much more than deep-sea fungi. these. Oceans are home to some of the most diverse life forms. These vary from whales, several metres long to bacteria smaller than a micron, creatures drab to stunning looking, sedate to constant swimmers, those which eat from anything to everything and those which are choosy about their meals. -
Diatom Distribution in the Lower Save River, Mozambique
Department of Physical Geography Diatom distribution in the lower Save River, Mozambique Taxonomy, salinity gradient and taphonomy Marie Christiansson Master’s thesis NKA 156 Physical Geography and Quaternary Geology, 60 Credits 2016 Preface This Master’s thesis is Marie Christiansson’s degree project in Physical Geography and Quaternary Geology at the Department of Physical Geography, Stockholm University. The Master’s thesis comprises 60 credits (two terms of full-time studies). Supervisor has been Jan Risberg at the Department of Physical Geography, Stockholm University. Examiner has been Stefan Wastegård at the Department of Physical Geography, Stockholm University. The author is responsible for the contents of this thesis. Stockholm, 11 September 2016 Steffen Holzkämper Director of studies Abstract In this study diatom distribution within the lower Save River, Mozambique, has been identified from surface sediments, surface water, mangrove cortex and buried sediments. Sandy units, bracketing a geographically extensive clay layer, have been dated with optical stimulated luminescence (OSL). Diatom analysis has been used to interpret the spatial salinity gradient and to discuss taphonomic processes within the delta. Previously, one study has been performed in the investigated area and it is of great importance to continue to identify diatom distributions since siliceous microfossils are widely used for paleoenvironmental research. Two diatom taxa, which were not possible to classify to species level have been identified; Cyclotella sp. and Diploneis sp. It is suggested that these represent species not earlier described; however they are assigned a brackish water affinity. Diatom analysis from surface water, surface sediments and mangrove cortex indicate a transition from ocean water to a dominance of freshwater taxa c. -
Life Cycle, Size Reduction Patterns, and Ultrastructure of the Pennate Planktonic Diatom Pseudo-Nitzschia Delicatissima (Bacillariophyceae)1
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Lirias J. Phycol. 41, 542–556 (2005) r 2005 Phycological Society of America DOI: 10.1111/j.1529-8817.2005.00080.x LIFE CYCLE, SIZE REDUCTION PATTERNS, AND ULTRASTRUCTURE OF THE PENNATE PLANKTONIC DIATOM PSEUDO-NITZSCHIA DELICATISSIMA (BACILLARIOPHYCEAE)1 Alberto Amato, Luisa Orsini,3 Domenico D’Alelio, and Marina Montresor2 Stazione Zoologica ‘‘A. Dohrn,’’ Villa Comunale, 80121 Naples, Italy Pseudo-nitzschia delicatissima (Cleve) Heiden is a Diatoms have complex life cycles, including a pecu- very common pennate planktonic diatom found in liar division mode and, in some, the capacity to pro- temperate marine waters, where it is often responsi- duce resting stages (Round et al. 1990, Edlund and ble for blooms. Recently, three distinct internal tran- Stoermer 1997). Because of the constraint represented scribed spacer types have been recorded during a by the rigid silica frustule that surrounds the cell, di- P. delicatissima bloom in the Gulf of Naples (Medi- atoms undergo progressive size reduction as vegetative terranean Sea, Italy), which suggests the existence of growth proceeds. Cell size is usually restored through cryptic diversity. We carried out mating experiments a sexual phase, which includes the formation of a with clonal strains belonging to the most abundant unique type of cell, the auxospore, that is not sur- internal transcribed spacer type. Pseudo-nitzschia deli- rounded by the siliceous frustule and is therefore catissima is heterothallic and produces two functional capable of expansion. Inside the auxospore, the anisogametes per gametangium. The elongated au- formation of a large-sized vegetative cell, called the in- xospore possesses a transverse and a longitudinal itial cell, takes place (Round et al. -
Bacterial, Archaeal, and Eukaryotic Diversity Across Distinct Microhabitats in an Acid Mine Drainage Victoria Mesa, José.L.R
Bacterial, archaeal, and eukaryotic diversity across distinct microhabitats in an acid mine drainage Victoria Mesa, José.L.R. Gallego, Ricardo González-Gil, B. Lauga, Jesus Sánchez, Célia Méndez-García, Ana I. Peláez To cite this version: Victoria Mesa, José.L.R. Gallego, Ricardo González-Gil, B. Lauga, Jesus Sánchez, et al.. Bacterial, archaeal, and eukaryotic diversity across distinct microhabitats in an acid mine drainage. Frontiers in Microbiology, Frontiers Media, 2017, 8 (SEP), 10.3389/fmicb.2017.01756. hal-01631843 HAL Id: hal-01631843 https://hal.archives-ouvertes.fr/hal-01631843 Submitted on 14 Jan 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. fmicb-08-01756 September 9, 2017 Time: 16:9 # 1 ORIGINAL RESEARCH published: 12 September 2017 doi: 10.3389/fmicb.2017.01756 Bacterial, Archaeal, and Eukaryotic Diversity across Distinct Microhabitats in an Acid Mine Drainage Victoria Mesa1,2*, Jose L. R. Gallego3, Ricardo González-Gil4, Béatrice Lauga5, Jesús Sánchez1, Celia Méndez-García6† and Ana I. Peláez1† 1 Department of Functional Biology – IUBA, University of Oviedo, Oviedo, Spain, 2 Vedas Research and Innovation, Vedas CII, Medellín, Colombia, 3 Department of Mining Exploitation and Prospecting – IUBA, University of Oviedo, Mieres, Spain, 4 Department of Biology of Organisms and Systems – University of Oviedo, Oviedo, Spain, 5 Equipe Environnement et Microbiologie, CNRS/Université de Pau et des Pays de l’Adour, Institut des Sciences Analytiques et de Physico-chimie pour l’Environnement et les Matériaux, UMR5254, Pau, France, 6 Carl R. -
THE Official Magazine of the OCEANOGRAPHY SOCIETY
OceThe OfficiaaL MaganZineog of the Oceanographyra Spocietyhy CITATION Bluhm, B.A., A.V. Gebruk, R. Gradinger, R.R. Hopcroft, F. Huettmann, K.N. Kosobokova, B.I. Sirenko, and J.M. Weslawski. 2011. Arctic marine biodiversity: An update of species richness and examples of biodiversity change. Oceanography 24(3):232–248, http://dx.doi.org/10.5670/ oceanog.2011.75. COPYRIGHT This article has been published inOceanography , Volume 24, Number 3, a quarterly journal of The Oceanography Society. Copyright 2011 by The Oceanography Society. All rights reserved. USAGE Permission is granted to copy this article for use in teaching and research. Republication, systematic reproduction, or collective redistribution of any portion of this article by photocopy machine, reposting, or other means is permitted only with the approval of The Oceanography Society. Send all correspondence to: [email protected] or The Oceanography Society, PO Box 1931, Rockville, MD 20849-1931, USA. downLoaded from www.tos.org/oceanography THE CHANGING ARctIC OCEAN | SPECIAL IssUE on THE IntERNATIonAL PoLAR YEAr (2007–2009) Arctic Marine Biodiversity An Update of Species Richness and Examples of Biodiversity Change Under-ice image from the Bering Sea. Photo credit: Miller Freeman Divers (Shawn Cimilluca) BY BODIL A. BLUHM, AnDREY V. GEBRUK, RoLF GRADINGER, RUssELL R. HoPCROFT, FALK HUEttmAnn, KsENIA N. KosoboKovA, BORIS I. SIRENKO, AND JAN MARCIN WESLAwsKI AbstRAct. The societal need for—and urgency of over 1,000 ice-associated protists, greater than 50 ice-associated obtaining—basic information on the distribution of Arctic metazoans, ~ 350 multicellular zooplankton species, over marine species and biological communities has dramatically 4,500 benthic protozoans and invertebrates, at least 160 macro- increased in recent decades as facets of the human footprint algae, 243 fishes, 64 seabirds, and 16 marine mammals. -
Phytoplankton 1 9
DOMAIN Groups (Kingdom) Dinophyta, Haptophyta, & Bacillariophyta 1.Bacteria- cyanobacteria (blue green algae) 2.Archae 3.Eukaryotes 1. Alveolates- dinoflagellates, coccolithophore Chromista 2. Stramenopiles- diatoms, ochrophyta 3. Rhizaria- unicellular amoeboids 4. Excavates- unicellular flagellates 5. Plantae- rhodophyta, chlorophyta, seagrasses 6. Amoebozoans- slimemolds 7. Fungi- heterotrophs with extracellular digestion 8. Choanoflagellates- unicellular Phytoplankton 1 9. Animals- multicellular heterotrophs 2 DOMAIN Eukaryotes Domain Eukaryotes – have a nucei Supergroup Chromista- chloroplasts derived from red algae Chromista = 21,556 spp. chloroplasts derived from red algae Division Haptophyta- 626 spp. coccolithophore contains Alveolates & Stramenopiles according to Algaebase Group Alveolates- unicellular, plasma membrane supported by flattened vesicles Division Haptophyta- 626 spp. coccolithophore Division Dinophyta- 3,310 spp. of dinoflagellates Group Stramenopiles- two unequal flagella, chloroplasts 4 membranes Division Ochrophyta- 3,763spp. brown algae Division Bacillariophyta -13,437 spp diatoms sphere of stone 3 4 1 Division Haptophyta: Coccolithophore Division Haptophyta: Coccolithophore • Pigments? Chl a &c Autotrophic, Phagotrophic & Osmotrophic Carotenoids:B-carotene, diatoxanthin, diadinoxanthin (uptake of nutrients by osmosis) •Carbon Storage? Sugar: Chrysolaminarian Primary producers in polar, subpolar, temperate & tropical waters • Chloroplasts? 4 membrane Coccolhliths- external bod y scales made of calcium carbonate -
Diatom Flagellar Genes and Their Expression During Sexual Reproduction in Leptocylindrus Danicus
Nanjappa et al. BMC Genomics (2017) 18:813 DOI 10.1186/s12864-017-4210-8 RESEARCH ARTICLE Open Access Diatom flagellar genes and their expression during sexual reproduction in Leptocylindrus danicus Deepak Nanjappa1,2* , Remo Sanges1, Maria I. Ferrante1 and Adriana Zingone1 Abstract Background: Flagella have been lost in the vegetative phase of the diatom life cycle, but they are still present in male gametes of centric species, thereby representing a hallmark of sexual reproduction. This process, besides maintaining and creating new genetic diversity, in diatoms is also fundamental to restore the maximum cell size following its reduction during vegetative division. Nevertheless, sexual reproduction has been demonstrated in a limited number of diatom species, while our understanding of its different phases and of their genetic control is scarce. Results: In the transcriptome of Leptocylindrus danicus, a centric diatom widespread in the world’s seas, we identified 22 transcripts related to the flagella development and confirmed synchronous overexpression of 6 flagellum-related genes during the male gamete formation process. These transcripts were mostly absent in the closely related species L. aporus, which does not have sexual reproduction. Among the 22 transcripts, L. danicus showed proteins that belong to the Intra Flagellar Transport (IFT) subcomplex B as well as IFT-A proteins, the latter previously thought to be absent in diatoms. The presence of flagellum-related proteins was also traced in the transcriptomes of several other centric species. Finally, phylogenetic reconstruction of the IFT172 and IFT88 proteins showed that their sequences are conserved across protist species and have evolved similarly to other phylogenetic marker genes. -
Extensive Cryptic Diversity in the Terrestrial Diatom Pinnularia
Protist, Vol. 170, 121–140, April 2019 http://www.elsevier.de/protis Published online date 13 October 2018 ORIGINAL PAPER Extensive Cryptic Diversity in the Terrestrial Diatom Pinnularia borealis (Bacillariophyceae) a,b,c,1,2 d,2 d d Eveline Pinseel , Jana Kulichová , Vojtechˇ Scharfen , Pavla Urbánková , b,c,3 a,3 Bart Van de Vijver , and Wim Vyverman a Protistology & Aquatic Ecology (PAE), Department of Biology, Faculty of Science, Ghent University, Krijgslaan 281-S8, B–9000 Ghent, Belgium b Research Department, Botanic Garden Meise, Nieuwelaan 38, B–1860 Meise, Belgium c Ecosystem Management Research Group (ECOBE), Department of Biology, Faculty of Science, University of Antwerp, Universiteitsplein 1, B–2610 Wilrijk, Antwerp, Belgium d Department of Botany, Faculty of Science, Charles University in Prague, Benátská 2, CZ–12801 Prague 2, Czech Republic Submitted April 30, 2018; Accepted October 2, 2018 Monitoring Editor: Wiebe H. C. F. Kooistra With the increasing application of molecular techniques for diatom species discovery and identification, it is important both from a taxonomic as well as an ecological and applied perspective, to understand in which groups morphological species delimitation is congruent with molecular approaches, or needs reconsideration. Moreover, such studies can improve our understanding of morphological trait evo- lution in this important group of microalgae. In this study, we used morphometric analysis on light microscopy (LM) micrographs in SHERPA, detailed scanning electron microscopy (SEM), and cyto- logical observations in LM to examine 70 clones belonging to eight distinct molecular lineages of the cosmopolitan terrestrial diatom Pinnularia borealis. Due to high within-lineage variation, no con- clusive morphological separation in LM nor SEM could be detected. -
Identification, Characterization and Evolution of the Mating Type Locus in Diatoms
Department of Biology Department of Plant Biotechnology and Bioinformatics Department of Plant Systems Biology Identification, characterization and evolution of the mating type locus in diatoms Ives Vanstechelman Promotors: Prof. Dr. Koen Sabbe and Prof. Dr. ir. Marnik Vuylsteke Thesis submitted in fulfillment of the requirements for the degree of Doctor (PhD) in Sciences (Biology) Academic year 2012-2013 Exam commission Promotors: Prof. Dr. Koen Sabbe Prof. Dr. ir. Marnik Vuylsteke Members of the reading commission Dr. Mariella Ferrante Prof. Dr. Olivier De Clerck Prof. Dr. Wout Boerjan Other members of the exam commission Prof. Dr. Wim Vyverman Prof. Dr. Mieke Verbeken Dr. Marie Huysman Copyright © Ives Vanstechelman, Department of Biology, Faculty of Sciences, Ghent University, 2013. All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted, in any form or by any means, electronic, mechanical, photocopying, recording, or otherwise, without permission in writing from the copyright holder(s). Acknowledgements The work presented in this thesis could not be successful without the help of several people. Therefore, I want to give a few words of thanks and appreciation for the people who supported me during this 4 years during PhD. First of all, I would like to thank my two promotors Koen Sabbe and Marnik Vuylsteke. Koen is my promotor with the biological background. He supported me a lot in giving more knowledge about the biology of diatoms and evolution. When I first met him, he could directly convince me to start in this position. The unique features of the diatom life cycle attracted me and I really saw it as a big challenge to get insight into the genetic basis of this. -
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PHYTOPLANKTON SUCCESSION AND RESTING STAGE OCCURRENCE IN THREE REGIONS IN SECHELT INLET, BRITISH COLUMBIA By Teni Sutherland B.Sc, University of British Columbia, 1988 A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE in THE FACULTY OF GRADUATE STUDIES (Department of Oceanography) We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA September 1991 ® Terri Sutherland In presenting this thesis in partial fulfilment of the requirements for an advanced degree at the University of British Columbia, I agree that the Library shall make it freely available for reference and study. I further agree that permission for extensive copying of this thesis for scholarly purposes may be granted by the head of my department or by his or her representatives. It is understood that copying or publication of this thesis for financial gain shall not be allowed without my written permission. Department The University of British Columbia Vancouver, Canada DE-6 (2/88) ii ABSTRACT Phytoplankton were monitored in three regions in Sechelt Inlet, British Columbia between June and September in 1989. The purpose was to compare the phytoplankton community (region I) transported into the inlet via a strong tidal jet to that which exists inside the inlet (region II) and in an inner shallow basin (region Ul). Core samples were also collected to compare the phytoplankton present at the water-sediment interface. In 1989 between June and September the temperature, salinity, and nutrient profiles show that the hydrographic conditions in region I were well-mixed, while those in region III were well-stratified.