Phytoplankton 1 9
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Number of Living Species in Australia and the World
Numbers of Living Species in Australia and the World 2nd edition Arthur D. Chapman Australian Biodiversity Information Services australia’s nature Toowoomba, Australia there is more still to be discovered… Report for the Australian Biological Resources Study Canberra, Australia September 2009 CONTENTS Foreword 1 Insecta (insects) 23 Plants 43 Viruses 59 Arachnida Magnoliophyta (flowering plants) 43 Protoctista (mainly Introduction 2 (spiders, scorpions, etc) 26 Gymnosperms (Coniferophyta, Protozoa—others included Executive Summary 6 Pycnogonida (sea spiders) 28 Cycadophyta, Gnetophyta under fungi, algae, Myriapoda and Ginkgophyta) 45 Chromista, etc) 60 Detailed discussion by Group 12 (millipedes, centipedes) 29 Ferns and Allies 46 Chordates 13 Acknowledgements 63 Crustacea (crabs, lobsters, etc) 31 Bryophyta Mammalia (mammals) 13 Onychophora (velvet worms) 32 (mosses, liverworts, hornworts) 47 References 66 Aves (birds) 14 Hexapoda (proturans, springtails) 33 Plant Algae (including green Reptilia (reptiles) 15 Mollusca (molluscs, shellfish) 34 algae, red algae, glaucophytes) 49 Amphibia (frogs, etc) 16 Annelida (segmented worms) 35 Fungi 51 Pisces (fishes including Nematoda Fungi (excluding taxa Chondrichthyes and (nematodes, roundworms) 36 treated under Chromista Osteichthyes) 17 and Protoctista) 51 Acanthocephala Agnatha (hagfish, (thorny-headed worms) 37 Lichen-forming fungi 53 lampreys, slime eels) 18 Platyhelminthes (flat worms) 38 Others 54 Cephalochordata (lancelets) 19 Cnidaria (jellyfish, Prokaryota (Bacteria Tunicata or Urochordata sea anenomes, corals) 39 [Monera] of previous report) 54 (sea squirts, doliolids, salps) 20 Porifera (sponges) 40 Cyanophyta (Cyanobacteria) 55 Invertebrates 21 Other Invertebrates 41 Chromista (including some Hemichordata (hemichordates) 21 species previously included Echinodermata (starfish, under either algae or fungi) 56 sea cucumbers, etc) 22 FOREWORD In Australia and around the world, biodiversity is under huge Harnessing core science and knowledge bases, like and growing pressure. -
Protist Phylogeny and the High-Level Classification of Protozoa
Europ. J. Protistol. 39, 338–348 (2003) © Urban & Fischer Verlag http://www.urbanfischer.de/journals/ejp Protist phylogeny and the high-level classification of Protozoa Thomas Cavalier-Smith Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK; E-mail: [email protected] Received 1 September 2003; 29 September 2003. Accepted: 29 September 2003 Protist large-scale phylogeny is briefly reviewed and a revised higher classification of the kingdom Pro- tozoa into 11 phyla presented. Complementary gene fusions reveal a fundamental bifurcation among eu- karyotes between two major clades: the ancestrally uniciliate (often unicentriolar) unikonts and the an- cestrally biciliate bikonts, which undergo ciliary transformation by converting a younger anterior cilium into a dissimilar older posterior cilium. Unikonts comprise the ancestrally unikont protozoan phylum Amoebozoa and the opisthokonts (kingdom Animalia, phylum Choanozoa, their sisters or ancestors; and kingdom Fungi). They share a derived triple-gene fusion, absent from bikonts. Bikonts contrastingly share a derived gene fusion between dihydrofolate reductase and thymidylate synthase and include plants and all other protists, comprising the protozoan infrakingdoms Rhizaria [phyla Cercozoa and Re- taria (Radiozoa, Foraminifera)] and Excavata (phyla Loukozoa, Metamonada, Euglenozoa, Percolozoa), plus the kingdom Plantae [Viridaeplantae, Rhodophyta (sisters); Glaucophyta], the chromalveolate clade, and the protozoan phylum Apusozoa (Thecomonadea, Diphylleida). Chromalveolates comprise kingdom Chromista (Cryptista, Heterokonta, Haptophyta) and the protozoan infrakingdom Alveolata [phyla Cilio- phora and Miozoa (= Protalveolata, Dinozoa, Apicomplexa)], which diverged from a common ancestor that enslaved a red alga and evolved novel plastid protein-targeting machinery via the host rough ER and the enslaved algal plasma membrane (periplastid membrane). -
Using Diatom and Apicomplexan Models to Study the Heme Pathway of Chromera Velia
International Journal of Molecular Sciences Article Using Diatom and Apicomplexan Models to Study the Heme Pathway of Chromera velia Jitka Richtová 1,2, Lilach Sheiner 3 , Ansgar Gruber 1 , Shun-Min Yang 1,2 , LudˇekKoˇrený 4, Boris Striepen 5 and Miroslav Oborník 1,2,* 1 Biology Centre CAS, Laboratory of Evolutionary Protistology, Institute of Parasitology, 370 05 Ceskˇ é Budˇejovice,Czech Republic; [email protected] (J.R.); [email protected] (A.G.); [email protected] (S.-M.Y.) 2 Faculty of Science, University of South Bohemia, 370 05 Ceskˇ é Budˇejovice,Czech Republic 3 Welcome Centre for Integrative Parasitology, College of Medical, Veterinary and Life Sciences, Institute of Infection, Immunity and Inflammation, University of Glasgow, Glasgow G12 8QQ, UK; [email protected] 4 Department of Biochemistry, University of Cambridge, Cambridge CB2 1TN, UK; [email protected] 5 Department of Pathobiology, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; [email protected] * Correspondence: [email protected]; Tel.: +420-387-775-464 Abstract: Heme biosynthesis is essential for almost all living organisms. Despite its conserved function, the pathway’s enzymes can be located in a remarkable diversity of cellular compartments in different organisms. This location does not always reflect their evolutionary origins, as might be expected from the history of their acquisition through endosymbiosis. Instead, the final subcellular localization of the enzyme reflects multiple factors, including evolutionary origin, demand for the product, availability of the substrate, and mechanism of pathway regulation. The biosynthesis of Citation: Richtová, J.; Sheiner, L.; heme in the apicomonad Chromera velia follows a chimeric pathway combining heme elements from Gruber, A.; Yang, S.-M.; Koˇrený,L.; the ancient algal symbiont and the host. -
Morphological and Transcriptomic Evidence for Ammonium Induction of Sexual Reproduction in Thalassiosira Pseudonana and Other Centric Diatoms
RESEARCH ARTICLE Morphological and transcriptomic evidence for ammonium induction of sexual reproduction in Thalassiosira pseudonana and other centric diatoms Eric R. Moore1, Briana S. Bullington1, Alexandra J. Weisberg2, Yuan Jiang3, Jeff Chang2, Kimberly H. Halsey1* 1 Department of Microbiology, Oregon State University, Corvallis, Oregon, United States of America, 2 Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of a1111111111 America, 3 Department of Statistics, Oregon State University, Corvallis, Oregon, United States of America a1111111111 a1111111111 * [email protected] a1111111111 a1111111111 Abstract The reproductive strategy of diatoms includes asexual and sexual phases, but in many spe- cies, including the model centric diatom Thalassiosira pseudonana, sexual reproduction has OPEN ACCESS never been observed. Furthermore, the environmental factors that trigger sexual reproduc- Citation: Moore ER, Bullington BS, Weisberg AJ, tion in diatoms are not understood. Although genome sequences of a few diatoms are avail- Jiang Y, Chang J, Halsey KH (2017) Morphological able, little is known about the molecular basis for sexual reproduction. Here we show that and transcriptomic evidence for ammonium induction of sexual reproduction in Thalassiosira ammonium reliably induces the key sexual morphologies, including oogonia, auxospores, pseudonana and other centric diatoms. PLoS ONE and spermatogonia, in two strains of T. pseudonana, T. weissflogii, and Cyclotella cryptica. 12(7): e0181098. https://doi.org/10.1371/journal. RNA sequencing revealed 1,274 genes whose expression patterns changed when T. pseu- pone.0181098 donana was induced into sexual reproduction by ammonium. Some of the induced genes Editor: Douglas A. Campbell, Mount Allison are linked to meiosis or encode flagellar structures of heterokont and cryptophyte algae. -
Representative Diatom and Coccolithophore Species Exhibit Divergent Responses Throughout Simulated Upwelling Cycles
bioRxiv preprint doi: https://doi.org/10.1101/2020.04.30.071480; this version posted May 1, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Representative diatom and coccolithophore species exhibit divergent responses throughout simulated upwelling cycles Robert H. Lampe1,2, Gustavo Hernandez2, Yuan Yu Lin3, and Adrian Marchetti2, 1Integrative Oceanography Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, USA 2Department of Marine Sciences, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA Phytoplankton communities in upwelling regions experience a ton blooms following upwelling (2, 5, 6). When upwelling wide range of light and nutrient conditions as a result of up- delivers cells and nutrients into well-lit surface waters, di- welling cycles. These cycles can begin with a bloom at the sur- atoms quickly respond to available nitrate and increase their face followed by cells sinking to depth when nutrients are de- nitrate uptake rates compared to other phytoplankton groups pleted. Cells can then be transported back to the surface with allowing them to bloom (7). This phenomenon may partially upwelled waters to seed another bloom. In spite of the physico- be explained by frontloading nitrate assimilation genes, i.e. chemical extremes associated with these cycles, diatoms consis- high expression before the upwelling event occurs, in addi- tently outcompete other phytoplankton when upwelling events occur. Here we simulated the conditions of a complete upwelling tion to diatom’s unique metabolic integration of nitrogen and cycle with a common diatom, Chaetoceros decipiens, and coccol- carbon metabolic pathways (6, 8). -
The Fungi Belonging to Kingdom Chromista: A. Oomycota
The Fungi belonging to Kingdom Chromista: a. Oomycota: Dr. Basudha Sharma Chromista ► Wittaker divided living beings into 5-Kingdom-Monera (Prokaryotic), Protista (Eukaryotic), Fungi, Plantae and Animalia. Molecular phylogeny, however suggested a new division: Chromista ► The chromists represent an independent evolutionary lineage that appears to have diverged from the same common ancestor as plants, animals and fungi. ► Chromista means ‘coloured’ and includes some colourless chromists like oomycota and certain algae. ► they all possess flagellated cells at some stage of their life cycles, and the flagella are typically of two types-hetrokont (whiplash and tinsel) ► the chloroplast is bounded by a double membrane, but has an extra layer of ER (also two-layered) that is often continuous with the nuclear envelope Chromista Oomycota ► commonly known as water moulds ► some are unicellular, however majority are multicellular and mycelial (branched filamentous coenocyte) ► They are classified as chromists because their free-swimming zoospores possess the heterokont-type flagella also, reserve food is stored in the form of mycolaminarin, an energy storage molecule similar to that found in diatoms and brown algae. ► oomycetes cell walls are composed of cellulose, free-living stage of the oomycetes has a diploid chromosome complement while that of the fungi is haploid. ► Asexual reproduction is by biflagellate zoospores ► Sexual reproduction is oogamus and involves the formation of oogonia and antheridia Saprolegnia ► These fungi are saprophytic organisms that are widely distributed in the aquatic environment and can derive nutrients from any organic source in water ► They become pathogenic to fish only when fish are stressed or eg. diseased. They attach to surfaces like gills and fins of fishes ► Reproduction in Saprolegnia may be sexual or asexual. -
Detection of Coccolithophore Blooms with Biogeochemical-Argo Floats L
Detection of Coccolithophore Blooms With BioGeoChemical-Argo Floats L. Terrats, H. Claustre, M. Cornec, Alain Mangin, G. Neukermans To cite this version: L. Terrats, H. Claustre, M. Cornec, Alain Mangin, G. Neukermans. Detection of Coccolithophore Blooms With BioGeoChemical-Argo Floats. Geophysical Research Letters, American Geophysical Union, 2020, 47 (23), 10.1029/2020GL090559. hal-03099761 HAL Id: hal-03099761 https://hal.archives-ouvertes.fr/hal-03099761 Submitted on 6 Jan 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution - NonCommercial| 4.0 International License RESEARCH LETTER Detection of Coccolithophore Blooms With 10.1029/2020GL090559 BioGeoChemical‐Argo Floats Key Points: L. Terrats1,2 , H. Claustre1 , M. Cornec1 , A. Mangin2, and G. Neukermans3,4 • We matched profiling float trajectories with ocean‐color 1Sorbonne Université, CNRS, Laboratoire d'Océanographie de Villefranche, LOV, Villefranche‐sur‐Mer, France, satellite observations of 2 ‐ 3 coccolithophore blooms ACRI ST, Sophia Antipolis, France, Biology Department, MarSens Research Group, Ghent University, Ghent, Belgium, • Two simple bio‐optical indices 4Flanders Marine Institute (VLIZ), InnovOcean site, Ostend, Belgium permitted successful identification of coccolithophore blooms from floats in the Southern Ocean Coccolithophores (calcifying phytoplankton) form extensive blooms in temperate and subpolar • Abstract A method for identifying ‐ coccolithophore blooms at the global oceans as evidenced from ocean color satellites. -
Kenai National Wildlife Refuge Species List, Version 2018-07-24
Kenai National Wildlife Refuge Species List, version 2018-07-24 Kenai National Wildlife Refuge biology staff July 24, 2018 2 Cover image: map of 16,213 georeferenced occurrence records included in the checklist. Contents Contents 3 Introduction 5 Purpose............................................................ 5 About the list......................................................... 5 Acknowledgments....................................................... 5 Native species 7 Vertebrates .......................................................... 7 Invertebrates ......................................................... 55 Vascular Plants........................................................ 91 Bryophytes ..........................................................164 Other Plants .........................................................171 Chromista...........................................................171 Fungi .............................................................173 Protozoans ..........................................................186 Non-native species 187 Vertebrates ..........................................................187 Invertebrates .........................................................187 Vascular Plants........................................................190 Extirpated species 207 Vertebrates ..........................................................207 Vascular Plants........................................................207 Change log 211 References 213 Index 215 3 Introduction Purpose to avoid implying -
Life in the Oceanic Realms
GENERAL ¨ ARTICLE Life in the Oceanic Realms Chandralata Raghukumar The marine environment includes the nutrient-rich coastal waters, relatively nutrient-poor open oceanic waters, coral reef atolls, metal-rich hydrothermal vent fluids with tem- peratures of 200-350oC, cold-seeps, estuaries, mangrove swamps, intertidal beaches and rocky shores. Oceans are home to some of the most diverse and unique life forms. This Chandralata Raghukumar article is an attempt to introduce some of the fundamentals of is an emeritus scientist at biologicaloceanography andmarine biologyto describe life in the National Institute of the sea. Oceanography, Goa. After obtaining a PhD in plant I’dliketobeunderthesea, pathology, she worked for 5 years on fungal diseases In an octopus’s garden in the shade, of marine algae in the We would be warm below the storm, Institute for Marine In our little hideaway beneath the waves, Research, Bremerhaven, We would be so happy, you and me, Germany. At NIO she worked on algal and coral No one there to tell us what to do. pathology and marine fungal biotechnology. Her May this song by the Beatles be an inspiration to a career in major interests are biological oceanography! The general notion about oceanogra- industrially important phy research revolves around scuba diving, killer whales, sharks, enzymes from marine fungi and physiology of giant octopus and lobsters. But the oceans are much more than deep-sea fungi. these. Oceans are home to some of the most diverse life forms. These vary from whales, several metres long to bacteria smaller than a micron, creatures drab to stunning looking, sedate to constant swimmers, those which eat from anything to everything and those which are choosy about their meals. -
New Phylogenomic Analysis of the Enigmatic Phylum Telonemia Further Resolves the Eukaryote Tree of Life
bioRxiv preprint doi: https://doi.org/10.1101/403329; this version posted August 30, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. New phylogenomic analysis of the enigmatic phylum Telonemia further resolves the eukaryote tree of life Jürgen F. H. Strassert1, Mahwash Jamy1, Alexander P. Mylnikov2, Denis V. Tikhonenkov2, Fabien Burki1,* 1Department of Organismal Biology, Program in Systematic Biology, Uppsala University, Uppsala, Sweden 2Institute for Biology of Inland Waters, Russian Academy of Sciences, Borok, Yaroslavl Region, Russia *Corresponding author: E-mail: [email protected] Keywords: TSAR, Telonemia, phylogenomics, eukaryotes, tree of life, protists bioRxiv preprint doi: https://doi.org/10.1101/403329; this version posted August 30, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract The broad-scale tree of eukaryotes is constantly improving, but the evolutionary origin of several major groups remains unknown. Resolving the phylogenetic position of these ‘orphan’ groups is important, especially those that originated early in evolution, because they represent missing evolutionary links between established groups. Telonemia is one such orphan taxon for which little is known. The group is composed of molecularly diverse biflagellated protists, often prevalent although not abundant in aquatic environments. -
The IUCN Red List of Threatened Speciestm
Species 2014 Annual ReportSpecies the Species of 2014 Survival Commission and the Global Species Programme Species ISSUE 56 2014 Annual Report of the Species Survival Commission and the Global Species Programme • 2014 Spotlight on High-level Interventions IUCN SSC • IUCN Red List at 50 • Specialist Group Reports Ethiopian Wolf (Canis simensis), Endangered. © Martin Harvey Muhammad Yazid Muhammad © Amazing Species: Bleeding Toad The Bleeding Toad, Leptophryne cruentata, is listed as Critically Endangered on The IUCN Red List of Threatened SpeciesTM. It is endemic to West Java, Indonesia, specifically around Mount Gede, Mount Pangaro and south of Sukabumi. The Bleeding Toad’s scientific name, cruentata, is from the Latin word meaning “bleeding” because of the frog’s overall reddish-purple appearance and blood-red and yellow marbling on its back. Geographical range The population declined drastically after the eruption of Mount Galunggung in 1987. It is Knowledge believed that other declining factors may be habitat alteration, loss, and fragmentation. Experts Although the lethal chytrid fungus, responsible for devastating declines (and possible Get Involved extinctions) in amphibian populations globally, has not been recorded in this area, the sudden decline in a creekside population is reminiscent of declines in similar amphibian species due to the presence of this pathogen. Only one individual Bleeding Toad was sighted from 1990 to 2003. Part of the range of Bleeding Toad is located in Gunung Gede Pangrango National Park. Future conservation actions should include population surveys and possible captive breeding plans. The production of the IUCN Red List of Threatened Species™ is made possible through the IUCN Red List Partnership. -
Effects of Increased Pco2 and Temperature on the North Atlantic Spring Bloom. III. Dimethylsulfoniopropionate
Vol. 388: 41–49, 2009 MARINE ECOLOGY PROGRESS SERIES Published August 19 doi: 10.3354/meps08135 Mar Ecol Prog Ser Effects of increased pCO2 and temperature on the North Atlantic spring bloom. III. Dimethylsulfoniopropionate Peter A. Lee1,*, Jamie R. Rudisill1, Aimee R. Neeley1, 7, Jennifer M. Maucher2, David A. Hutchins3, 8, Yuanyuan Feng3, 8, Clinton E. Hare3, Karine Leblanc3, 9,10, Julie M. Rose3,11, Steven W. Wilhelm4, Janet M. Rowe4, 5, Giacomo R. DiTullio1, 6 1Hollings Marine Laboratory, College of Charleston, 331 Fort Johnson Road, Charleston, South Carolina 29412, USA 2Center for Coastal Environmental Health and Biomolecular Research, National Oceanic and Atmospheric Administration, 219 Fort Johnson Road, Charleston, South Carolina 29412, USA 3College of Marine and Earth Studies, University of Delaware, 700 Pilottown Road, Lewes, Delaware 19958, USA 4Department of Microbiology, University of Tennessee, 1414 West Cumberland Ave, Knoxville, Tennessee 37996, USA 5Department of Plant Pathology, The University of Nebraska, 205 Morrison Center, Lincoln, Nebraska 68583, USA 6Grice Marine Laboratory, College of Charleston, 205 Fort Johnson Road, Charleston, South Carolina 29412, USA 7Present address: National Aeronautics and Space Administration, Calibration and Validation Office, 1450 S. Rolling Road, Suite 4.111, Halethorpe, Maryland 21227, USA 8Present address: Department of Biological Sciences, University of Southern California, 3616 Trousdale Parkway, Los Angeles, California 90089, USA 9Present address: Aix-Marseille Université, CNRS,