Filling Data Gaps on EMF and Marine Organisms
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Elasmobranch Biodiversity, Conservation and Management Proceedings of the International Seminar and Workshop, Sabah, Malaysia, July 1997
The IUCN Species Survival Commission Elasmobranch Biodiversity, Conservation and Management Proceedings of the International Seminar and Workshop, Sabah, Malaysia, July 1997 Edited by Sarah L. Fowler, Tim M. Reed and Frances A. Dipper Occasional Paper of the IUCN Species Survival Commission No. 25 IUCN The World Conservation Union Donors to the SSC Conservation Communications Programme and Elasmobranch Biodiversity, Conservation and Management: Proceedings of the International Seminar and Workshop, Sabah, Malaysia, July 1997 The IUCN/Species Survival Commission is committed to communicate important species conservation information to natural resource managers, decision-makers and others whose actions affect the conservation of biodiversity. The SSC's Action Plans, Occasional Papers, newsletter Species and other publications are supported by a wide variety of generous donors including: The Sultanate of Oman established the Peter Scott IUCN/SSC Action Plan Fund in 1990. The Fund supports Action Plan development and implementation. To date, more than 80 grants have been made from the Fund to SSC Specialist Groups. The SSC is grateful to the Sultanate of Oman for its confidence in and support for species conservation worldwide. The Council of Agriculture (COA), Taiwan has awarded major grants to the SSC's Wildlife Trade Programme and Conservation Communications Programme. This support has enabled SSC to continue its valuable technical advisory service to the Parties to CITES as well as to the larger global conservation community. Among other responsibilities, the COA is in charge of matters concerning the designation and management of nature reserves, conservation of wildlife and their habitats, conservation of natural landscapes, coordination of law enforcement efforts as well as promotion of conservation education, research and international cooperation. -
Abstracts Part 1
375 Poster Session I, Event Center – The Snowbird Center, Friday 26 July 2019 Maria Sabando1, Yannis Papastamatiou1, Guillaume Rieucau2, Darcy Bradley3, Jennifer Caselle3 1Florida International University, Miami, FL, USA, 2Louisiana Universities Marine Consortium, Chauvin, LA, USA, 3University of California, Santa Barbara, Santa Barbara, CA, USA Reef Shark Behavioral Interactions are Habitat Specific Dominance hierarchies and competitive behaviors have been studied in several species of animals that includes mammals, birds, amphibians, and fish. Competition and distribution model predictions vary based on dominance hierarchies, but most assume differences in dominance are constant across habitats. More recent evidence suggests dominance and competitive advantages may vary based on habitat. We quantified dominance interactions between two species of sharks Carcharhinus amblyrhynchos and Carcharhinus melanopterus, across two different habitats, fore reef and back reef, at a remote Pacific atoll. We used Baited Remote Underwater Video (BRUV) to observe dominance behaviors and quantified the number of aggressive interactions or bites to the BRUVs from either species, both separately and in the presence of one another. Blacktip reef sharks were the most abundant species in either habitat, and there was significant negative correlation between their relative abundance, bites on BRUVs, and the number of grey reef sharks. Although this trend was found in both habitats, the decline in blacktip abundance with grey reef shark presence was far more pronounced in fore reef habitats. We show that the presence of one shark species may limit the feeding opportunities of another, but the extent of this relationship is habitat specific. Future competition models should consider habitat-specific dominance or competitive interactions. -
Cartilaginous Fishes Offer Unique Insights Into the Evolution of The
General and Comparative Endocrinology 295 (2020) 113527 Contents lists available at ScienceDirect General and Comparative Endocrinology journal homepage: www.elsevier.com/locate/ygcen Research paper Cartilaginous fishes offer unique insights into the evolution of the nuclear receptor gene repertoire in gnathostomes T Elza Fonsecaa,b, André M. Machadoa, Nair Vilas-Arrondoc,d, André Gomes-dos-Santosa,b, Ana Veríssimob,e, Pedro Estevesb,d, Tereza Almeidab,e, Gonçalo Themudoa, Raquel Ruivoa, Montse Pérezc, Rute da Fonsecaf, Miguel M. Santosa,b, Elsa Froufea, Esther Román-Marcotec, ⁎ ⁎ Byrappa Venkateshg, , L. Filipe C. Castroa,b, a CIIMAR/CIMAR – Interdisciplinary Centre of Marine and Environmental Research, U.Porto, 4450-208 Matosinhos, Portugal b FCUP – Faculty of Sciences, Department of Biology, U.Porto, 4169-007 Porto, Portugal c AQUACOV, Instituto Español de Oceanografía, Centro Oceanográfico de Vigo, 36390 Vigo, Spain d UVIGO, phD Program “Marine Science, Tehchology and Management” (Do *MAR), Faculty of Biology, University of Vigo, 36200 Vigo, Spain e CIBIO – Research Center in Biodiversity and Genetic Resources, InBIO, Associate Laboratory, U.Porto, 4485-661 Vairão, Portugal f Center for Macroecology, Evolution and Climate, GLOBE Institute, University of Copenhagen, Denmark g Comparative Genomics Laboratory, Institute of Molecular and Cell Biology, A*STAR (Agency for Science, Technology and Research), Biopolis, Singapore 138673, Singapore ARTICLE INFO ABSTRACT Keywords: Nuclear receptors (NRs) are key transcription factors that originated in the common ancestor of metazoans. The Nuclear receptors vast majority of NRs are triggered by binding to either endogenous (e.g. retinoic acid) or exogenous (e.g. xe- Genome nobiotics) ligands, and their evolution and expansion is tightly linked to the function of endocrine systems. -
ASFIS ISSCAAP Fish List February 2007 Sorted on Scientific Name
ASFIS ISSCAAP Fish List Sorted on Scientific Name February 2007 Scientific name English Name French name Spanish Name Code Abalistes stellaris (Bloch & Schneider 1801) Starry triggerfish AJS Abbottina rivularis (Basilewsky 1855) Chinese false gudgeon ABB Ablabys binotatus (Peters 1855) Redskinfish ABW Ablennes hians (Valenciennes 1846) Flat needlefish Orphie plate Agujón sable BAF Aborichthys elongatus Hora 1921 ABE Abralia andamanika Goodrich 1898 BLK Abralia veranyi (Rüppell 1844) Verany's enope squid Encornet de Verany Enoploluria de Verany BLJ Abraliopsis pfefferi (Verany 1837) Pfeffer's enope squid Encornet de Pfeffer Enoploluria de Pfeffer BJF Abramis brama (Linnaeus 1758) Freshwater bream Brème d'eau douce Brema común FBM Abramis spp Freshwater breams nei Brèmes d'eau douce nca Bremas nep FBR Abramites eques (Steindachner 1878) ABQ Abudefduf luridus (Cuvier 1830) Canary damsel AUU Abudefduf saxatilis (Linnaeus 1758) Sergeant-major ABU Abyssobrotula galatheae Nielsen 1977 OAG Abyssocottus elochini Taliev 1955 AEZ Abythites lepidogenys (Smith & Radcliffe 1913) AHD Acanella spp Branched bamboo coral KQL Acanthacaris caeca (A. Milne Edwards 1881) Atlantic deep-sea lobster Langoustine arganelle Cigala de fondo NTK Acanthacaris tenuimana Bate 1888 Prickly deep-sea lobster Langoustine spinuleuse Cigala raspa NHI Acanthalburnus microlepis (De Filippi 1861) Blackbrow bleak AHL Acanthaphritis barbata (Okamura & Kishida 1963) NHT Acantharchus pomotis (Baird 1855) Mud sunfish AKP Acanthaxius caespitosa (Squires 1979) Deepwater mud lobster Langouste -
And Their Functional, Ecological, and Evolutionary Implications
DePaul University Via Sapientiae College of Science and Health Theses and Dissertations College of Science and Health Spring 6-14-2019 Body Forms in Sharks (Chondrichthyes: Elasmobranchii), and Their Functional, Ecological, and Evolutionary Implications Phillip C. Sternes DePaul University, [email protected] Follow this and additional works at: https://via.library.depaul.edu/csh_etd Part of the Biology Commons Recommended Citation Sternes, Phillip C., "Body Forms in Sharks (Chondrichthyes: Elasmobranchii), and Their Functional, Ecological, and Evolutionary Implications" (2019). College of Science and Health Theses and Dissertations. 327. https://via.library.depaul.edu/csh_etd/327 This Thesis is brought to you for free and open access by the College of Science and Health at Via Sapientiae. It has been accepted for inclusion in College of Science and Health Theses and Dissertations by an authorized administrator of Via Sapientiae. For more information, please contact [email protected]. Body Forms in Sharks (Chondrichthyes: Elasmobranchii), and Their Functional, Ecological, and Evolutionary Implications A Thesis Presented in Partial Fulfilment of the Requirements for the Degree of Master of Science June 2019 By Phillip C. Sternes Department of Biological Sciences College of Science and Health DePaul University Chicago, Illinois Table of Contents Table of Contents.............................................................................................................................ii List of Tables..................................................................................................................................iv -
Using Viviparous Sharks As a Model to Understand Vertebrate Placental Evolution
Marine and Freshwater Research, 2019, 70, 908–924 © CSIRO 2019 https://doi.org/10.1071/MF18076 Supplementary material Evolution of placentotrophy: using viviparous sharks as a model to understand vertebrate placental evolution Alice L. BuddleA, James U. Van DykeB, Michael B. ThompsonA, Colin A. SimpfendorferC and Camilla M. WhittingtonD,E AThe University of Sydney, School of Life and Environmental Sciences, Heydon-Laurence Building (A08), NSW 2006, Australia. BCharles Sturt University, School of Environmental Sciences, Institute for Land, Water and Society, Albury, NSW 2640, Australia. CJames Cook University, College of Science and Engineering and Centre for Sustainable Tropical Fisheries and Aquaculture, Townsville, Qld 4811, Australia. DThe University of Sydney, Sydney School of Veterinary Science, Camperdown, NSW 2006, Australia. ECorrespondence. Email: [email protected] Page 1 of 23 Marine and Freshwater Research © CSIRO 2019 https://doi.org/10.1071/MF18076 Table S1. Table of known parity mode, mode of embryonic nutrition, and other reproductive parameters of extant shark species Viviparous reproductive modes were assigned to species based on evidence of maternal contributions during pregnancy: lecithotrophic (embryos are reliant on yolk stores), lecithotrophic with histotrophy (embryos absorb maternal secretions in the form of histotroph), placental (development of a placental connection between the embryo and mother during pregnancy; note that placental nutrient transport has not necessarily been shown), oophagy (embryos ingest ova produced by the mother), and adelphophagy (embryos ingest sibling in utero). It should be noted that all viviparous species are initially lecithotrophic Order Family Species Parity mode Mode of Size at Litter size Gestation References embryonic birth range period nutrition (cm) (mean) Carcharhiniformes Carcharhinidae Carcharhinus acronotus Viviparous placental 31–36 1–5 (3.53) 11 months Hamlett 2005; Driggers et al. -
FAMILY Scyliorhinidae Gill, 1862 - Catsharks
Distributions and Habitats: Scyliorhinidae FAMILY Scyliorhinidae Gill, 1862 - catsharks GENUS Atelomycterus Garman, 1913 - catsharks Species Atelomycterus baliensis White et al., 2005 - Bali catshark Distribution: Indonesia. Habitat: marine. Species Atelomycterus erdmanni Fahmi & White, 2015 - Nudi Retreat catshark Distribution: Sulawesi, Indonesia. Habitat: marine. Species Atelomycterus fasciatus Compagno & Stevens, 1993 - banded sand catshark Distribution: Northwestern Australia. Habitat: marine. Species Atelomycterus macleayi Whitley, 1939 - Australian marbled catshark Distribution: Northern Australia. Habitat: marine. Species Atelomycterus marmoratus (Bennett, 1830) - coral catshark Distribution: Indo-West Pacific, continental; Pakistan and India thorugh the East Indies and north to China and south to Papua New Guinea. Habitat: marine. Species Atelomycterus marnkalha Jacobsen & Bennett, 2007 - Eastern banded catshark Distribution: Eastern Queensland to northern Australia to southern Papua New Guinea. Habitat: marine. GENUS Aulohalaelurus Fowler, 1934 - catsharks Species Aulohalaelurus kanakorum Séret, 1990 - New Caledonia catshark Distribution: Southwestern Pacific: New Caledonia. Habitat: marine. Species Aulohalaelurus labiosus (Waite, 1905) - Australian blackspotted catshark Distribution: Australia: Western Australia. Habitat: marine. GENUS Bythaelurus Compagno, 1988 - catsharks Species Bythaelurus alcockii (Garman, 1913) - Arabian catshark Distribution: Western Indian Ocean: Arabian Sea. Habitat: marine. Species Bythaelurus bachi -
Shark Genomes Provide Insights Into Elasmobranch Evolution and the Origin of Vertebrates
ARTICLES https://doi.org/10.1038/s41559-018-0673-5 Shark genomes provide insights into elasmobranch evolution and the origin of vertebrates Yuichiro Hara1,2,14, Kazuaki Yamaguchi1,2,14, Koh Onimaru 1,2, Mitsutaka Kadota1,2, Mitsumasa Koyanagi3,4, Sean D. Keeley1,12, Kaori Tatsumi1,2, Kaori Tanaka1, Fumio Motone1,5, Yuka Kageyama1,5, Ryo Nozu 6,7, Noritaka Adachi8,13, Osamu Nishimura1,2, Reiko Nakagawa1,2, Chiharu Tanegashima1,2, Itsuki Kiyatake9, Rui Matsumoto6,7, Kiyomi Murakumo7, Kiyonori Nishida9, Akihisa Terakita3,4, Shigeru Kuratani8,10, Keiichi Sato6,7, Susumu Hyodo11 and Shigehiro Kuraku 1,2* Modern cartilaginous fishes are divided into elasmobranchs (sharks, rays and skates) and chimaeras, and the lack of estab- lished whole-genome sequences for the former has prevented our understanding of early vertebrate evolution and the unique phenotypes of elasmobranchs. Here we present de novo whole-genome assemblies of brownbanded bamboo shark and cloudy catshark and an improved assembly of the whale shark genome. These relatively large genomes (3.8–6.7 Gbp) contain sparse distributions of coding genes and regulatory elements and exhibit reduced molecular evolutionary rates. Our thorough genome annotation revealed Hox C genes previously hypothesized to have been lost, as well as distinct gene repertories of opsins and olfactory receptors that would be associated with adaptation to unique underwater niches. We also show the early establish- ment of the genetic machinery governing mammalian homoeostasis and reproduction at the jawed vertebrate ancestor. This study, supported by genomic, transcriptomic and epigenomic resources, provides a foundation for the comprehensive, molecu- lar exploration of phenotypes unique to sharks and insights into the evolutionary origins of vertebrates. -
The Whale Shark Genome Reveals How Genomic and Physiological Properties Scale with Body Size
The whale shark genome reveals how genomic and physiological properties scale with body size Jessica A. Webera,1, Seung Gu Parkb,c,1, Victor Luriad,1, Sungwon Jeonb,c, Hak-Min Kimb,c, Yeonsu Jeonb,c, Youngjune Bhakb,c, Je Hun June, Sang Wha Kimf,g, Won Hee Hongh, Semin Leeb,c, Yun Sung Choe, Amir Kargeri, John W. Cainj, Andrea Manicak, Soonok Kiml, Jae-Hoon Kimm, Jeremy S. Edwardsn,2,3, Jong Bhakb,c,e,2,3, and George M. Churcha,2,3 aDepartment of Genetics, Harvard Medical School, Boston, MA 02115; bKorean Genomics Center, Ulsan National Institute of Science and Technology, 44919 Ulsan, Republic of Korea; cDepartment of Biomedical Engineering, School of Life Sciences, Ulsan National Institute of Science and Technology, 44919 Ulsan, Republic of Korea; dDepartment of Systems Biology, Harvard Medical School, Boston, MA 02115; eClinomics Inc., 44919 Ulsan, Republic of Korea; fLaboratory of Aquatic Biomedicine, College of Veterinary Medicine, Seoul National University, 08826 Seoul, Republic of Korea; gResearch Institute for Veterinary Science, College of Veterinary Medicine, Seoul National University, 08826 Seoul, Republic of Korea; hHanwha Marine Biology Research Center, 63642 Jeju, Republic of Korea; iIT–Research Computing, Harvard Medical School, Boston, MA 02115; jDepartment of Mathematics, Harvard University, Cambridge, MA 02138; kDepartment of Zoology, University of Cambridge, CB2 3EJ Cambridge, United Kingdom; lNational Institute of Biological Resources, 37242 Incheon, Republic of Korea; mCollege of Veterinary Medicine and Veterinary Medical Research Institute, Jeju National University, 63243 Jeju, Republic of Korea; and nDepartment of Chemistry and Chemical Biology, UNM Comprehensive Cancer Center, University of New Mexico, Albuquerque, NM 87131 Contributed by George M. -
Reproductive Biology of Deep-Sea Catsharks (Chondrichthyes: Scyliorhinidae) in the Eastern North Pacific
Environ Biol Fish (2008) 81:35–49 DOI 10.1007/s10641-006-9162-9 ORIGINAL PAPER Reproductive biology of deep-sea catsharks (Chondrichthyes: Scyliorhinidae) in the eastern North Pacific Brooke E. Flammang Æ David A. Ebert Æ Gregor M. Cailliet Received: 24 May 2006 / Accepted: 27 September 2006 / Published online: 14 November 2006 Ó Springer Science+Business Media B.V. 2006 Abstract Apristurus brunneus, A. kampae, and females reached TL50 at approximately 485 mm Parmaturus xaniurus were caught by trawl and TL and 490 mm TL, respectively. Parmaturus longline between Washington and southern xaniurus males reached TL50 at 444 mm TL and California (48°Nto32°N latitude) from June females at 501 mm TL. Gravid female A. brunn- 2001 through October 2004. In females, oviducal eus were found in all months of the year, but gland width increased with TL in all three species gravid P. xaniurus were found primarily June but remained within 4 to 6% of TL. Oocyte through September. Adult A. kampae females diameter increased with TL during reproductive were found only in July through November and development in all species, and continued to there were gravid females in all these months. increase with size after reproductive maturity was Based upon gonadosomatic indices, IG, these reached. The weight-length relationships differed species may mate within a defined period of time significantly among species but not between sexes (April through June); however, A. brunneus of any species from the eastern North Pacific appear to reproduce throughout the year and combined. Using logistic regression, it was deter- P. xaniurus reproduce within a defined season mined that total length at 50% maturity (TL50)of (approximately July through September). -
Artificial Insemination and Parthenogenesis in the Whitespotted Bamboo Shark Chiloscyllium Plagiosum
www.nature.com/scientificreports OPEN Artifcial insemination and parthenogenesis in the whitespotted bamboo shark Chiloscyllium plagiosum Jennifer T. Wyfels1,7*, Lance M. Adams2, Frank Bulman3, Ari Fustukjian4,8, Michael W. Hyatt5,9, Kevin A. Feldheim6 & Linda M. Penfold1 Non-lethal methods for semen collection from elasmobranchs to better understand species reproduction has accompanied the development of artifcial insemination. Ejaculates (n = 82) collected from whitespotted bamboo sharks Chiloscyllium plagiosum (n = 19) were assessed and cold-stored raw or extended at 4 °C. Females (n = 20) were inseminated with fresh or 24–48 h cold-stored raw or extended semen and paternity of ofspring determined with microsatellite markers. Insemination of females with fresh semen (n = 10) resulted in 80 hatchlings and 27.6% fertility. Insemination of females with semen cold-stored 24 h (n = 4) and 48 h (n = 1) semen resulted in 17 hatchlings and fertilization rates of 28.1% and 7.1% respectively. Two females inseminated with fresh or cold-stored semen laid eggs that hatched from fertilization and parthenogenesis within the same clutch. Parthenogenesis rate for inseminated females was 0.71%. Results demonstrate artifcial insemination with cold-stored semen can provide a strategy for transport of male genetics nationally and internationally, precluding the need to transport sharks. Production of parthenotes in the same clutch as sexually fertilized eggs highlights the prevalence of parthenogenesis in whitespotted bamboo sharks and poses important considerations for population management. Whitespotted bamboo sharks Chiloscyllium plagiosum are endemic to the Indo-West Pacifc Ocean and common in aquariums worldwide because of their longevity, successful reproduction under managed care and small size. -
Developmental Fates of Shark Head Cavities Reveal Mesodermal
Kuroda et al. Zoological Letters (2021) 7:3 https://doi.org/10.1186/s40851-021-00170-2 RESEARCH ARTICLE Open Access Developmental fates of shark head cavities reveal mesodermal contributions to tendon progenitor cells in extraocular muscles Shunya Kuroda1,2* , Noritaka Adachi3 , Rie Kusakabe1 and Shigeru Kuratani1,4 Abstract Vertebrate extraocular muscles (EOMs) function in eye movements. The EOMs of modern jawed vertebrates consist primarily of four recti and two oblique muscles innervated by three cranial nerves. The developmental mechanisms underlying the establishment of this complex and the evolutionarily conserved pattern of EOMs are unknown. Chondrichthyan early embryos develop three pairs of overt epithelial coeloms called head cavities (HCs) in the head mesoderm, and each HC is believed to differentiate into a discrete subset of EOMs. However, no direct evidence of these cell fates has been provided due to the technical difficulty of lineage tracing experiments in chondrichthyans. Here, we set up an in ovo manipulation system for embryos of the cloudy catshark Scyliorhinus torazame and labeled the epithelial cells of each HC with lipophilic fluorescent dyes. This experimental system allowed us to trace the cell lineage of EOMs with the highest degree of detail and reproducibility to date. We confirmed that the HCs are indeed primordia of EOMs but showed that the morphological pattern of shark EOMs is not solely dependent on the early pattern of the head mesoderm, which transiently appears as tripartite HCs along the simple anteroposterior axis. Moreover, we found that one of the HCs gives rise to tendon progenitor cells of the EOMs, which is an exceptional condition in our previous understanding of head muscles; the tendons associated with head muscles have generally been supposed to be derived from cranial neural crest (CNC) cells, another source of vertebrate head mesenchyme.