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New insights on and origins from targeted nuclear gene sequencing, SSRs, InDels and cytoplasmic markers genotyping Franck Curk, Andres Garcia-Lor, Hajer Snoussi, Yann Froelicher, Gema Ancillo, Luis Navarro, Patrick Ollitrault

To cite this version:

Franck Curk, Andres Garcia-Lor, Hajer Snoussi, Yann Froelicher, Gema Ancillo, et al.. New insights on lime and lemon origins from targeted nuclear gene sequencing, SSRs, InDels and cytoplasmic markers genotyping. 12. International Congress, Nov 2012, Valencia, Spain. 2012. ￿hal-02747321￿

HAL Id: hal-02747321 https://hal.inrae.fr/hal-02747321 Submitted on 3 Jun 2020

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