Integrative Taxonomy of the Gymnophthalmid Lizard Neusticurus
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Modeling and Partitioning the Nucleotide Evolutionary Process for Phylogenetic and Comparative Genomic Inference
University of Central Florida STARS Electronic Theses and Dissertations, 2004-2019 2007 Modeling And Partitioning The Nucleotide Evolutionary Process For Phylogenetic And Comparative Genomic Inference Todd Castoe University of Central Florida Part of the Biology Commons Find similar works at: https://stars.library.ucf.edu/etd University of Central Florida Libraries http://library.ucf.edu This Doctoral Dissertation (Open Access) is brought to you for free and open access by STARS. It has been accepted for inclusion in Electronic Theses and Dissertations, 2004-2019 by an authorized administrator of STARS. For more information, please contact [email protected]. STARS Citation Castoe, Todd, "Modeling And Partitioning The Nucleotide Evolutionary Process For Phylogenetic And Comparative Genomic Inference" (2007). Electronic Theses and Dissertations, 2004-2019. 3111. https://stars.library.ucf.edu/etd/3111 MODELING AND PARTITIONING THE NUCLEOTIDE EVOLUTIONARY PROCESS FOR PHYLOGENETIC AND COMPARATIVE GENOMIC INFERENCE by TODD A. CASTOE B.S. SUNY – College of Environmental Science and Forestry, 1999 M.S. The University of Texas at Arlington, 2001 A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biomolecular Sciences in the Burnett College of Biomedical Sciences at the University of Central Florida Orlando, Florida Spring Term 2007 Major Professor: Christopher L. Parkinson © 2007 Todd A. Castoe ii ABSTRACT The transformation of genomic data into functionally relevant information about the composition of biological systems hinges critically on the field of computational genome biology, at the core of which lies comparative genomics. The aim of comparative genomics is to extract meaningful functional information from the differences and similarities observed across genomes of different organisms. -
Catalogue of the Amphibians of Venezuela: Illustrated and Annotated Species List, Distribution, and Conservation 1,2César L
Mannophryne vulcano, Male carrying tadpoles. El Ávila (Parque Nacional Guairarepano), Distrito Federal. Photo: Jose Vieira. We want to dedicate this work to some outstanding individuals who encouraged us, directly or indirectly, and are no longer with us. They were colleagues and close friends, and their friendship will remain for years to come. César Molina Rodríguez (1960–2015) Erik Arrieta Márquez (1978–2008) Jose Ayarzagüena Sanz (1952–2011) Saúl Gutiérrez Eljuri (1960–2012) Juan Rivero (1923–2014) Luis Scott (1948–2011) Marco Natera Mumaw (1972–2010) Official journal website: Amphibian & Reptile Conservation amphibian-reptile-conservation.org 13(1) [Special Section]: 1–198 (e180). Catalogue of the amphibians of Venezuela: Illustrated and annotated species list, distribution, and conservation 1,2César L. Barrio-Amorós, 3,4Fernando J. M. Rojas-Runjaic, and 5J. Celsa Señaris 1Fundación AndígenA, Apartado Postal 210, Mérida, VENEZUELA 2Current address: Doc Frog Expeditions, Uvita de Osa, COSTA RICA 3Fundación La Salle de Ciencias Naturales, Museo de Historia Natural La Salle, Apartado Postal 1930, Caracas 1010-A, VENEZUELA 4Current address: Pontifícia Universidade Católica do Río Grande do Sul (PUCRS), Laboratório de Sistemática de Vertebrados, Av. Ipiranga 6681, Porto Alegre, RS 90619–900, BRAZIL 5Instituto Venezolano de Investigaciones Científicas, Altos de Pipe, apartado 20632, Caracas 1020, VENEZUELA Abstract.—Presented is an annotated checklist of the amphibians of Venezuela, current as of December 2018. The last comprehensive list (Barrio-Amorós 2009c) included a total of 333 species, while the current catalogue lists 387 species (370 anurans, 10 caecilians, and seven salamanders), including 28 species not yet described or properly identified. Fifty species and four genera are added to the previous list, 25 species are deleted, and 47 experienced nomenclatural changes. -
Canaima National Park and Angel Falls
Venezuela Tours • Canaima National Park & Angel Falls Canaima National Park & Angel Falls 6 nights / 7 days DAY 1: CARACAS A guide will greet you upon arrival and will transfer you to your hotel for two nights’ accommodation. DAY 2: CARACAS Today you will join a full day city tour of Venezuela with a shared guide and transportation included as well as all entrance fees required. The morning starts with a well-planned tour to the city’s major historical sites including Simon Bolivar’s birth place and museum, the cathedral and Sacro Museum, the Consejo Municipal and the Avila Hills for a panoramic view of the city. After lunch you will visit the Quinta Anauco museum, one of the best in the city. DAY 3: CARACAS – PUERTO ORDAZ – CANAIMA NATIONAL PARK A guide will transfer you to the airport in time to check in for and to board your flight to Puerto Ordaz connecting with your flight to Canaima National Park. Upon arrival a guide will greet you and will transfer your Canaima lodge for three nights’ accommodation. After lunch you will embark on a guided excursion to Yuri Falls. Yuri Falls are located some 10km from the Canaima Lagoon by boat. En route the group will stop for a number of fantastic photo opportunities in the unique landscape. Your guide will point out interesting rock formations and other peculiarities found in Canaima. After a short 20 minute navigation you will arrive at a pier where the group will disembark and prepare for a short walk through the jungle. At the falls where you will have some free time for swimming and relaxing before returning to camp for dinner and overnight accommodations. -
Two New Endangered Species of Anomaloglossus (Anura: Aromobatidae) from Roraima State, Northern Brazil
Zootaxa 3926 (2): 191–210 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2015 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3926.2.2 http://zoobank.org/urn:lsid:zoobank.org:pub:BCA3901A-DF07-4FAF-8386-C24649557313 Two new endangered species of Anomaloglossus (Anura: Aromobatidae) from Roraima State, northern Brazil ANTOINE FOUQUET1,2,8, SERGIO MARQUES SOUZA2, PEDRO M. SALES NUNES2,3, PHILIPPE J. R. KOK4,5, FELIPE FRANCO CURCIO2,6, CELSO MORATO DE CARVALHO7, TARAN GRANT2 & MIGUEL TREFAUT RODRIGUES2 1CNRS Guyane USR3456, Immeuble Le Relais, 2 Avenue Gustave Charlery, 97300, Cayenne, French Guiana 2Universidade de São Paulo, Instituto de Biociências, Departamento de Zoologia, Caixa Postal 11.461,CEP 05508-090, São Paulo, SP, Brazil 3Universidade Federal de Pernambuco, Centro de Ciências Biológicas, Departamento de Zoologia, Av. Professor Moraes Rego, s/n. Cidade Universitária CEP 50670-901, Recife, PE, Brazil 4Biology Department, Amphibian Evolution Lab, Vrije Universiteit Brussel, 2 Pleinlaan, B- 1050 Brussels, Belgium 5Department of Recent Vertebrates, Royal Belgian Institute of Natural Sciences, 29 rue Vautier, B- 1000 Brussels, Belgium 6Universidade Federal de Mato Grosso, Instituto de Biociências, Departamento de Biologia e Zoologia, CEP 78060-900, Cuiaba MT, Brazil 7INPA Núcleo de Pesquisas de Roraima (INPA/NPRR), Rua Coronel Pinto 315 – Centro, 69301-970, Boa Vista, RR, Brazil 8Corresponding author. E-mail: [email protected] Abstract We describe two new species of Anomaloglossus from Roraima State, Brazil, that are likely endemic to single mountains currently isolated among lowland forest and savanna ecosystems. The first species, Anomaloglossus tepequem sp. -
Zootaxa, Herpetological Results of the 2002 Expedition to Sarisarinama, A
ZOOTAXA 1942 Herpetological results of the 2002 expedition to Sarisariñama, a tepui in Venezuelan Guayana, with the description of five new species CESAR L. BARRIO-AMOROS & CHARLES BREWER-CARIAS Magnolia Press Auckland, New Zealand Cesar L. Barrio-Amoros & Charles Brewer-Carias Herpetological results of the 2002 expedition to Sarisariñama, a tepui in Venezuelan Guayana, with the description of five new species (Zootaxa 1942) 68 pp.; 30 cm. 26 Nov. 2008 ISBN 978-1-86977-269-7 (paperback) ISBN 978-1-86977-270-3 (Online edition) FIRST PUBLISHED IN 2008 BY Magnolia Press P.O. Box 41-383 Auckland 1346 New Zealand e-mail: [email protected] http://www.mapress.com/zootaxa/ © 2008 Magnolia Press All rights reserved. No part of this publication may be reproduced, stored, transmitted or disseminated, in any form, or by any means, without prior written permission from the publisher, to whom all requests to reproduce copyright material should be directed in writing. This authorization does not extend to any other kind of copying, by any means, in any form, and for any purpose other than private research use. ISSN 1175-5326 (Print edition) ISSN 1175-5334 (Online edition) 2 · Zootaxa 1942 © 2008 Magnolia Press BARRIO-AMORÓS & BREWER-CARÍAS Zootaxa 1942: 1–68 (2008) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA Copyright © 2008 · Magnolia Press ISSN 1175-5334 (online edition) Herpetological results of the 2002 expedition to Sarisariñama, a tepui in Venezuelan Guayana, with the description of five new species CÉSAR L. BARRIO-AMORÓS1 & CHARLES BREWER-CARÍAS2 1Fundación AndígenA, Apartado Postal 210, 5101-A Mérida, Venezuela. -
Ficha Catalográfica Online
UNIVERSIDADE ESTADUAL DE CAMPINAS INSTITUTO DE BIOLOGIA – IB SUZANA MARIA DOS SANTOS COSTA SYSTEMATIC STUDIES IN CRYPTANGIEAE (CYPERACEAE) ESTUDOS FILOGENÉTICOS E SISTEMÁTICOS EM CRYPTANGIEAE CAMPINAS, SÃO PAULO 2018 SUZANA MARIA DOS SANTOS COSTA SYSTEMATIC STUDIES IN CRYPTANGIEAE (CYPERACEAE) ESTUDOS FILOGENÉTICOS E SISTEMÁTICOS EM CRYPTANGIEAE Thesis presented to the Institute of Biology of the University of Campinas in partial fulfillment of the requirements for the degree of PhD in Plant Biology Tese apresentada ao Instituto de Biologia da Universidade Estadual de Campinas como parte dos requisitos exigidos para a obtenção do Título de Doutora em Biologia Vegetal ESTE ARQUIVO DIGITAL CORRESPONDE À VERSÃO FINAL DA TESE DEFENDIDA PELA ALUNA Suzana Maria dos Santos Costa E ORIENTADA PELA Profa. Maria do Carmo Estanislau do Amaral (UNICAMP) E CO- ORIENTADA pelo Prof. William Wayt Thomas (NYBG). Orientadora: Maria do Carmo Estanislau do Amaral Co-Orientador: William Wayt Thomas CAMPINAS, SÃO PAULO 2018 Agência(s) de fomento e nº(s) de processo(s): CNPq, 142322/2015-6; CAPES Ficha catalográfica Universidade Estadual de Campinas Biblioteca do Instituto de Biologia Mara Janaina de Oliveira - CRB 8/6972 Costa, Suzana Maria dos Santos, 1987- C823s CosSystematic studies in Cryptangieae (Cyperaceae) / Suzana Maria dos Santos Costa. – Campinas, SP : [s.n.], 2018. CosOrientador: Maria do Carmo Estanislau do Amaral. CosCoorientador: William Wayt Thomas. CosTese (doutorado) – Universidade Estadual de Campinas, Instituto de Biologia. Cos1. Savanas. 2. Campinarana. 3. Campos rupestres. 4. Filogenia - Aspectos moleculares. 5. Cyperaceae. I. Amaral, Maria do Carmo Estanislau do, 1958-. II. Thomas, William Wayt, 1951-. III. Universidade Estadual de Campinas. Instituto de Biologia. IV. Título. -
Why the World's Tallest Waterfall Is Named Angel Falls
terrae incognitae, Vol. 44 No. 1, April, 2012, 16–42 Why the World’s Tallest Waterfall is Named Angel Falls Karen Angel Eureka, California, USA Jimmie Angel (1899–1956) was an aviator and adventurer in the early years of air exploration. This article discusses his discovery of Angel Falls, the world’s tallest waterfall, which bears his name, and the impact of that discovery — and his reputation and dogged determination — on later expeditions into the Venezuelan interior. The author, Angel’s niece, pieces together this fascinating story using a blend of dedicated archival research and painstakingly acquired family history and the reminiscences of friends and acquaintances of Jimmie and his wife Marie. The result is a tale of modern-day exploration and geographic discovery. keywords Jimmie Angel, Angel Falls, Auyántepui, E. Thomas Gilliard, Anne Roe Simpson, George Gaylord Simpson, Venezuela When I began researching the life of American aviator James “Jimmie” Crawford Angel (1899–1956), there were many stories about him in books, newspapers, magazines, and more recently on websites and blogs. Some stories can be verified by the Angel family or other sources; some stories are plausible, but remain unverified; other stories are fabrications. The result is a tangle of true stories and unverified stories. Finding the truth about Jimmie Angel is also complicated because he himself repeated the various unverified stories that became legends about his life.1 As the daughter of Jimmie Angel’s youngest brother Clyde Marshall Angel (1917– 97), I had heard stories about my uncle since childhood, but the family had few documents to support the stories. -
Redalyc.Comparative Studies of Supraocular Lepidosis in Squamata
Multequina ISSN: 0327-9375 [email protected] Instituto Argentino de Investigaciones de las Zonas Áridas Argentina Cei, José M. Comparative studies of supraocular lepidosis in squamata (reptilia) and its relationships with an evolutionary taxonomy Multequina, núm. 16, 2007, pp. 1-52 Instituto Argentino de Investigaciones de las Zonas Áridas Mendoza, Argentina Disponible en: http://www.redalyc.org/articulo.oa?id=42801601 Cómo citar el artículo Número completo Sistema de Información Científica Más información del artículo Red de Revistas Científicas de América Latina, el Caribe, España y Portugal Página de la revista en redalyc.org Proyecto académico sin fines de lucro, desarrollado bajo la iniciativa de acceso abierto ISSN 0327-9375 COMPARATIVE STUDIES OF SUPRAOCULAR LEPIDOSIS IN SQUAMATA (REPTILIA) AND ITS RELATIONSHIPS WITH AN EVOLUTIONARY TAXONOMY ESTUDIOS COMPARATIVOS DE LA LEPIDOSIS SUPRA-OCULAR EN SQUAMATA (REPTILIA) Y SU RELACIÓN CON LA TAXONOMÍA EVOLUCIONARIA JOSÉ M. CEI † las subfamilias Leiosaurinae y RESUMEN Enyaliinae. Siempre en Iguania Observaciones morfológicas Pleurodonta se evidencian ejemplos previas sobre un gran número de como los inconfundibles patrones de especies permiten establecer una escamas supraoculares de correspondencia entre la Opluridae, Leucocephalidae, peculiaridad de los patrones Polychrotidae, Tropiduridae. A nivel sistemáticos de las escamas específico la interdependencia en supraoculares de Squamata y la Iguanidae de los géneros Iguana, posición evolutiva de cada taxón Cercosaura, Brachylophus, -
<I>Alopoglossus Atriventris
HERPETOLOGICAL JOURNAL 17: 269–272, 2007 digenean Mesocoelium monas in Prionodactylus Short Note eigenmanni, also from Brazil. The purpose of this paper is to present an initial helminth list for Alopoglossus angulatus and A. atriventris. Parasite communities of two Nineteen Alopoglossus angulatus (mean snout–vent length [SVL] = 42.1±13.4 mm, range 24–60 mm) and 16 A. lizard species, Alopoglossus atriventris (SVL = 36.9±9.2 mm, range 21–48 mm) were angulatus and Alopoglossus borrowed from the herpetology collection of the Sam No- ble Oklahoma Museum of Natural History (OMNH) and atriventris, from Brazil and examined for helminths. Stomachs from these lizards had previously been removed and were not available for this Ecuador study. Collection localities are as follows. Alopoglossus angulatus: 14 (OMNH 36931–36944) from Acre state, Bra- Stephen R. Goldberg1, Charles R. zil 1996; one (OMNH 37125) from Amazonas state, Brazil Bursey2 & Laurie J. Vitt3 1997; one (OMNH 37337) from Rondônia state, Brazil 1998; three (OMNH 36440–36442) from Sucumbíos prov- 1Department of Biology, Whittier College, California, USA ince, Ecuador 1994. Alopoglossus atriventris: eight 2Department of Biology, Pennsylvania State University, USA (OMNH 36945–36952) from Acre state, Brazil 1996; four 3Sam Noble Oklahoma Museum of Natural History and (OMNH 37126–37129) from Amazonas state, Brazil 1997; Zoology Department, University of Oklahoma, USA two (OMNH 37637–37638) from Amazonas state, Brazil 1998; two (OMNH 36438–36439) from Sucumbíos prov- Alopoglossus angulatus and A. atriventris from Brazil ince, Ecuador 1994. These lizards had originally been fixed and Ecuador were examined for endoparasites. in 10% formalin and stored in 70% ethanol. -
Anura: Dendrobatidae: Anomaloglossus) from the Orinoquian Rainforest, Southern Venezuela
TERMS OF USE This pdf is provided by Magnolia Press for private/research use. Commercial sale or deposition in a public library or website is prohibited. Zootaxa 2413: 37–50 (2010) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2010 · Magnolia Press ISSN 1175-5334 (online edition) A new dendrobatid frog (Anura: Dendrobatidae: Anomaloglossus) from the Orinoquian rainforest, southern Venezuela CÉSAR L. BARRIO-AMORÓS1,4, JUAN CARLOS SANTOS2 & OLGA JOVANOVIC3 1,4 Fundación AndígenA, Apartado postal 210, 5101-A Mérida, Venezuela 2University of Texas at Austin, Integrative Biology, 1 University Station C0930 Austin TX 78705, USA 3Division of Evolutionary Biology, Technical University of Braunschweig, Spielmannstr 8, 38106 Braunschweig, Germany 4Corresponding author. E-mail: [email protected]; [email protected] Abstract A new species of Anomaloglossus is described from the Venezuelan Guayana; it is the 21st described species of Anomaloglossus from the Guiana Shield, and the 15th from Venezuela. This species inhabits rainforest on granitic substrate on the northwestern edge of the Guiana Shield (Estado Amazonas, Venezuela). The new species is distinguished from congeners by sexual dimorphism, its unique male color pattern (including two bright orange parotoid marks and two orange paracloacal spots on dark brown background), call characteristics and other morphological features. Though to the new species is known only from the northwestern edge of the Guiana Shield, its distribution may be more extensive, as there are no significant biogeographic barriers isolating the type locality from the granitic lowlands of Venezuela. Key words: Amphibia, Dendrobatidae, Anomaloglossus, Venezuela, Guiana Shield Resumen Se describe una nueva especie de Anomaloglossus de la Guayana venezolana, que es la vigesimoprimera descrita del Escudo Guayanés, y la decimoquinta para Venezuela. -
Molecular Phylogenetic Relationships Among Pristimantis Summit Populations in the Eastern Tepui Chain: Insights from P
SALAMANDRA 53(3) 473–478 15 August 2017 CorrespondenceISSN 0036–3375 Correspondence Molecular phylogenetic relationships among Pristimantis summit populations in the eastern tepui chain: insights from P. aureoventris (Anura: Craugastoridae) Daniel Jablonski1, Daniel Gruľa1, César L. Barrio-Amorós2 & Philippe J. R. Kok3 1) Department of Zoology, Comenius University in Bratislava, Mlynská dolina, Ilkovičova 6, 842 15 Bratislava, Slovakia 2) Doc Frog Expeditions, Apartado Postal 220-8000, San José, Pérez Zeledón, San Isidro del General, 11901, Costa Rica 3) Amphibian Evolution Lab, Biology Department, Vrije Universiteit Brussel, Pleinlaan 2, 1050 Brussels, Belgium Corresponding authors: Daniel Jablonski, Philippe Kok, e-mails: [email protected]; [email protected] Manuscript received: 20 December 2016 Accepted: 23 January 2017 by Jörn Köhler No less than 500 nominal species are currently recognized Wei-Assipu-tepui. Both taxa inhabit similar environments, in the frog genus Pristimantis, the most speciose vertebrate and although phenotypically similar, these two species di- genus in the world (Frost 2016). Only twenty of these spe- verge in a number of morphological characters (e.g., size, cies are distributed in Pantepui (area sensu Kok 2013b, see skin texture), colour pattern (including sexual dichroma- also Kok & Barrio-Amorós 2013, Rojas-Runjaic et al. tism), and advertisement call (Kok et al. 2011). In addition, 2013), nine of them being restricted to tepui summits and P. aureoventris exhibits a high degree of pattern polymor- tepui upper slopes (Kok 2013a, Rojas-Runjaic et al. 2013). phism, while P. yuruaniensis is barely variable. Molecular According to McDiarmid & Donnelly (2005) and Kok phylogenetic analyses indicated that populations of these (2013a, b), several undescribed Pristimantis species could two species are reciprocally monophyletic (Kok et al. -
Reptilia, Squamata, Gymnophthalmidae, Potamites Erythrocularis Chávez & Catenazzi, 2014: Distribution Extension
Herpetology Notes, volume 8: 625-628 (2015) (published online on 20 December 2015) Reptilia, Squamata, Gymnophthalmidae, Potamites erythrocularis Chávez & Catenazzi, 2014: Distribution extension Juan C. Chávez-Arribasplata1,*, Vilma Duran2, and Germán Chávez3 The neotropical family Gymnophthalmidae Merrem, individuals of Potamites erythrocularis were recorded, 1820 comprises 36 genera that occur from Mexico representing the first record outside of the localities to Argentina (Goicoechea et al., 2012). This highly where the type series was collected. diversified family includes the semi-aquatic lizard A young female of Potamites erythrocularis (CORBIDI genus Potamites Doan & Castoe, 2005, which currently 13548) was found at El Parador, Inambari, 8.64 Km SE comprises eight species distributed from western Costa of Puerto Carlos (S 12.9699, W 70.2323; 266m) at 21:30 Rica and Panama to the Amazonian forests of Bolivia on 30 September 2013 by José Malqui and Germán (Chávez and Catenazzi, 2014). Likewise, with five Chávez. It was catched in the leaf-litter alongside a slow species Peru is the country with the highest diversity flowing stream 2-2.5 m in width. The stream drained a within this genus: P. flavogularis Altamirano-Benavides, closed canopy primary forest with riparian vegetation Zaher, Lobo, Grazziotin, Sales Nunes and Rodrigues, of ferns, lichens, plants of the family Heliconaceae and 2013; P. ecpleopus Cope 1876, P. montanicola Chavez Asteraceae and trees of the family Fabaceae. An adult y Vasquez, 2012; P. strangulatus Cope, 1868; and P. male (CORBIDI 15152) was also found at the locality erythrocularis Chavez and Catenazzi, 2014. Most of of El Parador (S 12.9804, W 70.2362; 253m) at 00:32 them are distributed in the Amazonian lowlands (Doan on 5 November 2014 by Juan C.