Phylogenetic Relationships Within Oweniidae Rioja (Polych Aeta, Annelida)
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Discovery of Bilaterian-Type Through-Guts in Cloudinomorphs from the Terminal Ediacaran Period
ARTICLE https://doi.org/10.1038/s41467-019-13882-z OPEN Discovery of bilaterian-type through-guts in cloudinomorphs from the terminal Ediacaran Period James D. Schiffbauer 1,2*, Tara Selly 1,2*, Sarah M. Jacquet 1, Rachel A. Merz3, Lyle L. Nelson4, Michael A. Strange5, Yaoping Cai6 & Emily F. Smith 4 The fossil record of the terminal Ediacaran Period is typified by the iconic index fossil Cloudina and its relatives. These tube-dwellers are presumed to be primitive metazoans, but resolving 1234567890():,; their phylogenetic identity has remained a point of contention. The root of the problem is a lack of diagnostic features; that is, phylogenetic interpretations have largely centered on the only available source of information—their external tubes. Here, using tomographic analyses of fossils from the Wood Canyon Formation (Nevada, USA), we report evidence of recog- nizable soft tissues within their external tubes. Although alternative interpretations are plausible, these internal cylindrical structures may be most appropriately interpreted as digestive tracts, which would be, to date, the earliest-known occurrence of such features in the fossil record. If this interpretation is correct, their nature as one-way through-guts not only provides evidence for establishing these fossils as definitive bilaterians but also has implications for the long-debated phylogenetic position of the broader cloudinomorphs. 1 Department of Geological Sciences, University of Missouri, Columbia, MO 65211, USA. 2 X-ray Microanalysis Core, University of Missouri, Columbia, MO 65211, USA. 3 Biology Department, Swarthmore College, Swarthmore, PA 19081, USA. 4 Department of Earth and Planetary Sciences, Johns Hopkins University, Baltimore, MD 21218, USA. -
Supplementary Tales
Metabarcoding reveals different zooplankton communities in northern and southern areas of the North Sea Jan Niklas Macher, Berry B. van der Hoorn, Katja T. C. A. Peijnenburg, Lodewijk van Walraven, Willem Renema Supplementary tables 1-5 Table S1: Sampling stations and recorded abiotic variables recorded during the NICO 10 expedition from the Dutch Coast to the Shetland Islands Sampling site name Coordinates (°N, °E) Mean remperature (°C) Mean salinity (PSU) Depth (m) S74 59.416510, 0.499900 8.2 35.1 134 S37 58.1855556, 0.5016667 8.7 35.1 89 S93 57.36046, 0.57784 7.8 34.8 84 S22 56.5866667, 0.6905556 8.3 34.9 220 S109 56.06489, 1.59652 8.7 35 79 S130 55.62157, 2.38651 7.8 34.8 73 S156 54.88581, 3.69192 8.3 34.6 41 S176 54.41489, 4.04154 9.6 34.6 43 S203 53.76851, 4.76715 11.8 34.5 34 Table S2: Species list and read number per sampling site Class Order Family Genus Species S22 S37 S74 S93 S109 S130 S156 S176 S203 Copepoda Calanoida Acartiidae Acartia Acartia clausi 0 0 0 72 0 170 15 630 3995 Copepoda Calanoida Acartiidae Acartia Acartia tonsa 0 0 0 0 0 0 0 0 23 Hydrozoa Trachymedusae Rhopalonematidae Aglantha Aglantha digitale 0 0 0 0 1870 117 420 629 0 Actinopterygii Trachiniformes Ammodytidae Ammodytes Ammodytes marinus 0 0 0 0 0 263 0 35 0 Copepoda Harpacticoida Miraciidae Amphiascopsis Amphiascopsis cinctus 344 0 0 992 2477 2500 9574 8947 0 Ophiuroidea Amphilepidida Amphiuridae Amphiura Amphiura filiformis 0 0 0 0 219 0 0 1470 63233 Copepoda Calanoida Pontellidae Anomalocera Anomalocera patersoni 0 0 586 0 0 0 0 0 0 Bivalvia Venerida -
Polychaeta: Serpulidae) from Southeastern Australia
AUSTRALIAN MUSEUM SCIENTIFIC PUBLICATIONS Knight-Jones, E. W., P. Knight-Jones and L. C. Llewellyn, 1974. Spirorbinae (Polychaeta: Serpulidae) from southeastern Australia. Notes on their taxonomy, ecology, and distribution. Records of the Australian Museum 29(3): 106–151. [1 May 1974]. doi:10.3853/j.0067-1975.29.1974.230 ISSN 0067-1975 Published by the Australian Museum, Sydney naturenature cultureculture discover discover AustralianAustralian Museum Museum science science is is freely freely accessible accessible online online at at www.australianmuseum.net.au/publications/www.australianmuseum.net.au/publications/ 66 CollegeCollege Street,Street, SydneySydney NSWNSW 2010,2010, AustraliaAustralia o ~------------------~o 25-20 and above 23-17 19- 14 17- 13 ood below 20 20 40 40 ,-- 50 50 Figure I.-Top left, collecting sites near Adelaide; top right, ditto near Sydney; bottom, collecting locations inset, showing also currents of warm, cool (interrupted lines) and cold water (dotted lines). A second smaller arrow-head indicates that the current occasionally reverses. Coastal water types and the mean position of the subtropical convergence (see p. 147) modified from Knox (1963), with mean summer (February) and winter (August) temperatures in degreesC. SPIRORBINAE (POLYCHAETA: SERPULIDAE) FROM SOUTHEASTERN AUSTRALIA. Notes on their Taxonomy, Ecology, and Distribution By E. W. KNIGHT-jONES and PHYLLIS KNIGHT-jONES University College of Swansea, U.K. and L. C. LLEWELLYN, New South Wales State Fisheries, Sydney, Australia Figures 1-14 Manuscript received, 1st September, 1972 SUMMARY Fifteen species belonging to seven genera are described, with pictorial and dichotomous keys to identification and notes on their distribution in other regions. All occur on or adjoining the shore, or on seaweeds cast ashore. -
New Insights in the Biogeographical Distributions of Two Spionidae (Annelida) from the NE Atlantic and Mediterranean French Coasts
Zoosymposia 19: 173–184 (2020) ISSN 1178-9905 (print edition) https://www.mapress.com/j/zs ZOOSYMPOSIA Copyright © 2020 · Magnolia Press ISSN 1178-9913 (online edition) https://doi.org/10.11646/zoosymposia.19.1.18 http://zoobank.org/urn:lsid:zoobank.org:pub:7CF4D06E-47F9-48C5-9703-5CECFD9C1491 New insights in the biogeographical distributions of two Spionidae (Annelida) from the NE Atlantic and Mediterranean French coasts JÉRÔME JOURDE1,5*, NICOLAS LAVESQUE2,7, CÉLINE LABRUNE3,10, JEAN-MICHEL AMOUR- OUX3,12, PAULO BONIFÁCIO3,11, SUZIE HUMBERT2,8, BASTIEN LAMARQUE2,9, PIERRE-GUY SAURIAU1,6 & KARIN MEIßNER4,13 1La Rochelle Université, CNRS, UMR 7266 LIENSs, 2 rue Olympe de Gouges 17000 La Rochelle, France 2Université de Bordeaux, CNRS, UMR 5805 EPOC, Station Marine d’Arcachon, 2 rue du Professeur Jolyet, 33120 Arcachon, France 3Sorbonne Université, CNRS, UMR LECOB 8222, Laboratoire d’Ecogéochimie des Environnements Benthiques, Observatoire Océanologique de Banyuls, Avenue Pierre Fabre, 66650 Banyuls-sur-Mer, France 4Senckenberg Forschungsinstitute und Naturmuseen (SFN), Deutsches Zentrum für Marine Biodiversitätsforschung, Biozentrum Grindel, Martin-Luther-King-Platz 3, D-20146 Hamburg, Germany 5 [email protected], https://orcid.org/0000-0001-7260-8419 6 [email protected], https://orcid.org/0000-0002-5360-8728 7 [email protected], https://orcid.org/0000-0001-5701-2393 8 [email protected], https://orcid.org/0000-0003-4254-3567 9 [email protected], https://orcid.org/0000-0002-1418-9049 10 [email protected], -
Phylogenetic Relationships of Serpulidae (Annelida: Polychaeta) Based on 18S Rdna Sequence Data, and Implications for Opercular Evolution Janina Lehrkea,Ã, Harry A
ARTICLE IN PRESS Organisms, Diversity & Evolution 7 (2007) 195–206 www.elsevier.de/ode Phylogenetic relationships of Serpulidae (Annelida: Polychaeta) based on 18S rDNA sequence data, and implications for opercular evolution Janina Lehrkea,Ã, Harry A. ten Hoveb, Tara A. Macdonaldc, Thomas Bartolomaeusa, Christoph Bleidorna,1 aInstitute for Zoology, Animal Systematics and Evolution, Freie Universitaet Berlin, Koenigin-Luise-Street 1-3, 14195 Berlin, Germany bZoological Museum, University of Amsterdam, P.O. Box 94766, 1090 GT Amsterdam, The Netherlands cBamfield Marine Sciences Centre, Bamfield, British Columbia, Canada, V0R 1B0 Received 19 December 2005; accepted 2 June 2006 Abstract Phylogenetic relationships of (19) serpulid taxa (including Spirorbinae) were reconstructed based on 18S rRNA gene sequence data. Maximum likelihood, Bayesian inference, and maximum parsimony methods were used in phylogenetic reconstruction. Regardless of the method used, monophyly of Serpulidae is confirmed and four monophyletic, well- supported major clades are recovered: the Spirorbinae and three groups hitherto referred to as the Protula-, Serpula-, and Pomatoceros-group. Contrary to the taxonomic literature and the hypothesis of opercular evolution, the Protula- clade contains non-operculate (Protula, Salmacina) and operculate taxa both with pinnulate and non-pinnulate peduncle (Filograna vs. Vermiliopsis), and most likely is the sister group to Spirorbinae. Operculate Serpulinae and poorly or non-operculate Filograninae are paraphyletic. It is likely that lack of opercula in some serpulid genera is not a plesiomorphic character state, but reflects a special adaptation. r 2007 Gesellschaft fu¨r Biologische Systematik. Published by Elsevier GmbH. All rights reserved. Keywords: Serpulidae; Phylogeny; Operculum; 18S rRNA gene; Annelida; Polychaeta Introduction distinctive calcareous tubes and bilobed tentacular crowns, each with numerous radioles that bear shorter Serpulids are common members of marine hard- secondary branches (pinnules) on the inner side. -
Boccardia Proboscidea Class: Polychaeta, Sedentaria, Canalipalpata
Phylum: Annelida Boccardia proboscidea Class: Polychaeta, Sedentaria, Canalipalpata Order: Spionida, Spioniformia A burrowing spionid worm Family: Spionidae Taxonomy: Boccardia proboscidea’s senior Trunk: subjective synonym, Polydora californica Posterior: Pygidium is a round, flaring (Treadwell, 1914) and an un-typified name, disc with four unequal lobes where dorsal Spio californica (Fewkes, 1889) were both lobes are smaller (Fig. 4) (Hartman 1969). suppressed in 2012 by the International Parapodia: Biramous after first setiger. Commission on Zoological Nomenclature Podia on the first setiger are not lobed, small (ICZN, case 3520). The widely cited and and inconspicuous. The second setiger's used name, Boccardia proboscidea parapodial lobes become twice as large as (Hartman, 1940) was conserved (ICZN the first's, and continue to worm posterior. 2012). Setae (chaetae): All setae are simple and in- clude bunches of short, capillary spines to se- Description tiger six (except for modified setiger five) Size: Specimens up to 30–35 mm in length (Figs. 5a, b). A transverse row of and 1.5 mm in width, where length extends approximately eight neuropodial uncini with age (Hartman 1940). The illustrated (hooded hooks) with bifid (two-pronged) tips specimen has approximately 130 segments begins on setiger seven and continues to (Fig. 1). posterior end (Fig. 5e), with bunches of Color: Yellow-orange with red branchiae capillary setae below them (until setiger 11). and dusky areas around prostomium and Notosetae of setiger five are heavy, dark and parapodia (Hartman 1969). Sato-Okoshi arranged vertically in two rows of five with and Okoshi (1997) report black pigment fol- pairs of long, falcate spines (Fig. -
Annelida, Polychaeta, Chaetopteridae), with Re- Chaetopteridae), with Re-Description of M
2 We would like to thank the Zoological Journal of the Linnean Society, The Linnean Society of London and Blackwell Publishing for accepting our manuscript entitled “Description of a Description of a new species of Mesochaetopterus (Annelida, Polychaeta, new species of Mesochaetopterus (Annelida, Polychaeta, Chaetopteridae), with re- Chaetopteridae), with re-description of M. xerecus and an approach to the description of M. xerecus and an approach to the phylogeny of the family”, which has phylogeny of the family been published in the Journal issue Zool. J. Linnean Soc. 2008, 152: 201–225. D. MARTIN1,* J. GIL1, J. CARRERAS-CARBONELL1 and M. BHAUD2 By posting this version of the manuscript (i.e. pre-printed), we agree not to sell or reproduce the Article or any part of it for commercial purposes (i.e. for monetary gain on your own 1Centre d'Estudis Avançats de Blanes (CSIC), Carrer d’accés a la Cala Sant Francesc 14, account or on that of a third party, or for indirect financial gain by a commercial entity), and 17300 Blanes (Girona), Catalunya (Spain). we expect the same from the users. 2 Observatoire Océanologique de Banyuls, Université P. et M. Curie - CNRS, BP 44, 66650 As soon as possible, we will add a link to the published version of the Article at the editors Banyuls-sur-Mer, Cedex, France. web site. * Correspondence author: Daniel Martin. Centre d'Estudis Avançats de Blanes (CSIC), Carrer Daniel Martin, Joao Gil, Michel Bhaud & Josep Carreras-Carbonell d’accés a la Cala Sant Francesc 14, 17300 Blanes (Girona), Catalunya (Spain). Tel. +34972336101; Fax: +34 972337806; E-mail: [email protected]. -
Biomineralization of Polychaete Annelids in the Fossil Record
minerals Review Biomineralization of Polychaete Annelids in the Fossil Record Olev Vinn Department of Geology, University of Tartu, Ravila 14A, 50411 Tartu, Estonia; [email protected]; Tel.: +372-5067728 Received: 31 August 2020; Accepted: 25 September 2020; Published: 29 September 2020 Abstract: Ten distinct microstructures occur in fossil serpulids and serpulid tubes can contain several layers with different microstructures. Diversity and complexity of serpulid skeletal structures has greatly increased throughout their evolution. In general, Cenozoic serpulid skeletal structures are better preserved than Mesozoic ones. The first complex serpulid microstructures comparable to those of complex structures of molluscs appeared in the Eocene. The evolution of serpulid tube microstructures can be explained by the importance of calcareous tubes for serpulids as protection against predators and environmental disturbances. Both fossil cirratulids and sabellids are single layered and have only spherulitic prismatic tube microstructures. Microstructures of sabellids and cirratulids have not evolved since the appearance of calcareous species in the Jurassic and Oligocene, respectively. The lack of evolution in sabellids and cirratulids may result from the unimportance of biomineralization for these groups as only few species of sabellids and cirratulids have ever built calcareous tubes. Keywords: biominerals; calcite; aragonite; skeletal structures; serpulids; sabellids; cirratulids; evolution 1. Introduction Among polychaete annelids, calcareous tubes are known in serpulids, cirratulids and sabellids [1–3]. The earliest serpulids and sabellids are known from the Permian [4], and cirratulids from the Oligocene [5]. Only serpulids dwell exclusively within calcareous tubes. Polychaete annelids build their tubes from calcite, aragonite or a mixture of both polymorphs. Calcareous polychaete tubes possess a variety of ultrastructural fabrics, from simple to complex, some being unique to annelids [1]. -
Mitochondrial Genomes of Two Polydora
www.nature.com/scientificreports OPEN Mitochondrial genomes of two Polydora (Spionidae) species provide further evidence that mitochondrial architecture in the Sedentaria (Annelida) is not conserved Lingtong Ye1*, Tuo Yao1, Jie Lu1, Jingzhe Jiang1 & Changming Bai2 Contrary to the early evidence, which indicated that the mitochondrial architecture in one of the two major annelida clades, Sedentaria, is relatively conserved, a handful of relatively recent studies found evidence that some species exhibit elevated rates of mitochondrial architecture evolution. We sequenced complete mitogenomes belonging to two congeneric shell-boring Spionidae species that cause considerable economic losses in the commercial marine mollusk aquaculture: Polydora brevipalpa and Polydora websteri. The two mitogenomes exhibited very similar architecture. In comparison to other sedentarians, they exhibited some standard features, including all genes encoded on the same strand, uncommon but not unique duplicated trnM gene, as well as a number of unique features. Their comparatively large size (17,673 bp) can be attributed to four non-coding regions larger than 500 bp. We identifed an unusually large (putative) overlap of 14 bases between nad2 and cox1 genes in both species. Importantly, the two species exhibited completely rearranged gene orders in comparison to all other available mitogenomes. Along with Serpulidae and Sabellidae, Polydora is the third identifed sedentarian lineage that exhibits disproportionally elevated rates of mitogenomic architecture rearrangements. Selection analyses indicate that these three lineages also exhibited relaxed purifying selection pressures. Abbreviations NCR Non-coding region PCG Protein-coding gene Metazoan mitochondrial genomes (mitogenomes) usually encode the set of 37 genes, comprising 2 rRNAs, 22 tRNAs, and 13 proteins, encoded on both genomic strands. -
The Marine Fauna of New Zealand : Spirorbinae (Polychaeta : Serpulidae)
ISSN 0083-7903, 68 (Print) ISSN 2538-1016; 68 (Online) The Marine Fauna of New Zealand : Spirorbinae (Polychaeta : Serpulidae) by PETER J. VINE ANOGlf -1,. �" ii 'i ,;.1, J . --=--� • ��b, S�• 1 • New Zealand Oceanographic Institute Memoir No. 68 1977 The Marine Fauna of New Zealand: Spirorbinae (Polychaeta: Serpulidae) This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/3.0/ Frontispiece Spirorbinae on a piece of alga washed up on the New Zealand seashore. This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/3.0/ NEW ZEALAND DEPARTMENT OF SCIENTIFIC AND INDUSTRIAL RESEARCH The Marine Fauna of New Zealand: Spirorbinae (Polychaeta: Serpulidae) by PETER J. VINE Department of Zoology, University College, Singleton Park, Swansea, Wales, UK and School of Biological Sciences, James Cook University of North Queensland, Townsville, Australia PERMANENT ADDRESS "Coe! na Mara", Faul, c/- Dr Casey, Clifden, County Galway, Ireland New Zealand Oceanographic Institute Memoir No. 68 1977 This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/3.0/ Citation according to World list of Scientific Periodicals (4th edition: Mem. N.Z. oceanogr. Inst. 68 ISSN 0083-7903 Received for publication at NZOI January 1973 Edited by T. K. Crosby, Science InformationDivision, DSIR and R. -
The Trace Fossil Diopatrichnus Santamariensis Nov. Isp. – a Shell Armored Tube from Pliocene Sediments of Santa Maria Island, Azores (NE Atlantic Ocean)
Uchman, A., Quintino, V., Rodrigues, A. M., Johnson, M. E., Melo, C. S., Cordeiro, R., Ramalho, R. S., & Ávila, S. P. (2017). The trace fossil Diopatrichnus santamariensis nov. isp. – a shell armored tube from Pliocene sediments of Santa Maria Island, Azores (NE Atlantic Ocean). Geobios, 50(5-6), 459-469. https://doi.org/10.1016/j.geobios.2017.09.002 Peer reviewed version License (if available): CC BY-NC-ND Link to published version (if available): 10.1016/j.geobios.2017.09.002 Link to publication record in Explore Bristol Research PDF-document This is the author accepted manuscript (AAM). The final published version (version of record) is available online via ELSEVIER at https://www.sciencedirect.com/science/article/pii/S0016699516301292 . Please refer to any applicable terms of use of the publisher. University of Bristol - Explore Bristol Research General rights This document is made available in accordance with publisher policies. Please cite only the published version using the reference above. Full terms of use are available: http://www.bristol.ac.uk/red/research-policy/pure/user-guides/ebr-terms/ Accepted Manuscript Title: The trace fossil Diopatrichnus santamariensis nov. isp. – a shell armored tube from Pliocene sediments of Santa Maria Island, Azores (NE Atlantic Ocean) Author: Alfred Uchman Victor Quintino Ana Maria Rodrigues Markes E. Johnson Carlos Melo Ricardo Cordeiro Ricardo S. Ramalho Sergio´ P. Avila´ PII: S0016-6995(16)30129-2 DOI: https://doi.org/doi:10.1016/j.geobios.2017.09.002 Reference: GEOBIO 794 To appear in: Geobios Received date: 23-12-2016 Accepted date: 29-9-2017 Please cite this article as: Uchman, A., Quintino, V., Rodrigues, A.M., Johnson, M.E., Melo, C., Cordeiro, R., Ramalho, R.S., Avila,´ S.P.,The trace fossil Diopatrichnus santamariensis nov. -
(OWENIIDAE, ANNELIDA POLYCHAETA) from the YELLOW SEA and EVIDENCE THAT OWENIA FUSIFORMIS IS NOT a COSMOPOLITAN SPECIES B Koh, M Bhaud
DESCRIPTION OF OWENIA GOMSONI N. SP. (OWENIIDAE, ANNELIDA POLYCHAETA) FROM THE YELLOW SEA AND EVIDENCE THAT OWENIA FUSIFORMIS IS NOT A COSMOPOLITAN SPECIES B Koh, M Bhaud To cite this version: B Koh, M Bhaud. DESCRIPTION OF OWENIA GOMSONI N. SP. (OWENIIDAE, ANNELIDA POLYCHAETA) FROM THE YELLOW SEA AND EVIDENCE THAT OWENIA FUSIFORMIS IS NOT A COSMOPOLITAN SPECIES. Vie et Milieu / Life & Environment, Observatoire Océanologique - Laboratoire Arago, 2001, pp.77-86. hal-03192101 HAL Id: hal-03192101 https://hal.sorbonne-universite.fr/hal-03192101 Submitted on 7 Apr 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. VIE ET MILIEU, 2001, 51 (1-2) : 77-86 DESCRIPTION OF OWENIA GOMSONI N. SP. (OWENIIDAE, ANNELIDA POLYCHAETA) FROM THE YELLOW SEA AND EVIDENCE THAT OWENIA FUSIFORMIS IS NOT A COSMOPOLITAN SPECIES B.S. KOH, M. BHAUD Observatoire Océanologique de Banyuls, Université P. et M. Curie - CNRS, BP 44, 66650 Banyuls-sur-Mer Cedex, France e-mail: [email protected] POLYCHAETA ABSTRACT. - Two Owenia fusiformis populations from différent geographical lo- OWENIIDAE cations were comparée! to assess whether this species has a truly cosmopolitan dis- NEW SPECIES tribution.