Safe Movement of Legume Germplasm
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Phytoalexins: Current Progress and Future Prospects
Phytoalexins: Current Progress and Future Prospects Edited by Philippe Jeandet Printed Edition of the Special Issue Published in Molecules www.mdpi.com/journal/molecules Philippe Jeandet (Ed.) Phytoalexins: Current Progress and Future Prospects This book is a reprint of the special issue that appeared in the online open access journal Molecules (ISSN 1420-3049) in 2014 (available at: http://www.mdpi.com/journal/molecules/special_issues/phytoalexins-progress). Guest Editor Philippe Jeandet Laboratory of Stress, Defenses and Plant Reproduction U.R.V.V.C., UPRES EA 4707, Faculty of Sciences, University of Reims, PO Box. 1039, 51687 Reims cedex 02, France Editorial Office MDPI AG Klybeckstrasse 64 Basel, Switzerland Publisher Shu-Kun Lin Managing Editor Ran Dang 1. Edition 2015 MDPI • Basel • Beijing ISBN 978-3-03842-059-0 © 2015 by the authors; licensee MDPI, Basel, Switzerland. All articles in this volume are Open Access distributed under the Creative Commons Attribution 3.0 license (http://creativecommons.org/licenses/by/3.0/), which allows users to download, copy and build upon published articles even for commercial purposes, as long as the author and publisher are properly credited, which ensures maximum dissemination and a wider impact of our publications. However, the dissemination and distribution of copies of this book as a whole is restricted to MDPI, Basel, Switzerland. III Table of Contents About the Editor ............................................................................................................... VII List of -
Phylogeny and Phylogeography of Rhizobial Symbionts Nodulating Legumes of the Tribe Genisteae
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Lincoln University Research Archive G C A T T A C G G C A T genes Review Phylogeny and Phylogeography of Rhizobial Symbionts Nodulating Legumes of the Tribe Genisteae Tomasz St˛epkowski 1,*, Joanna Banasiewicz 1, Camille E. Granada 2, Mitchell Andrews 3 and Luciane M. P. Passaglia 4 1 Autonomous Department of Microbial Biology, Faculty of Agriculture and Biology, Warsaw University of Life Sciences (SGGW), Nowoursynowska 159, 02-776 Warsaw, Poland; [email protected] 2 Universidade do Vale do Taquari—UNIVATES, Rua Avelino Tallini, 171, 95900-000 Lajeado, RS, Brazil; [email protected] 3 Faculty of Agriculture and Life Sciences, Lincoln University, P.O. Box 84, Lincoln 7647, New Zealand; [email protected] 4 Departamento de Genética, Instituto de Biociências, Universidade Federal do Rio Grande do Sul. Av. Bento Gonçalves, 9500, Caixa Postal 15.053, 91501-970 Porto Alegre, RS, Brazil; [email protected] * Correspondence: [email protected]; Tel.: +48-509-453-708 Received: 31 January 2018; Accepted: 5 March 2018; Published: 14 March 2018 Abstract: The legume tribe Genisteae comprises 618, predominantly temperate species, showing an amphi-Atlantic distribution that was caused by several long-distance dispersal events. Seven out of the 16 authenticated rhizobial genera can nodulate particular Genisteae species. Bradyrhizobium predominates among rhizobia nodulating Genisteae legumes. Bradyrhizobium strains that infect Genisteae species belong to both the Bradyrhizobium japonicum and Bradyrhizobium elkanii superclades. In symbiotic gene phylogenies, Genisteae bradyrhizobia are scattered among several distinct clades, comprising strains that originate from phylogenetically distant legumes. -
Analysis of the Role of Bradysia Impatiens (Diptera: Sciaridae) As a Vector Transmitting Peanut Stunt Virus on the Model Plant Nicotiana Benthamiana
cells Article Analysis of the Role of Bradysia impatiens (Diptera: Sciaridae) as a Vector Transmitting Peanut Stunt Virus on the Model Plant Nicotiana benthamiana Marta Budziszewska, Patryk Fr ˛ackowiak and Aleksandra Obr˛epalska-St˛eplowska* Department of Molecular Biology and Biotechnology, Institute of Plant Protection—National Research Institute, Władysława W˛egorka20, 60-318 Pozna´n,Poland; [email protected] (M.B.); [email protected] (P.F.) * Correspondence: [email protected] or [email protected] Abstract: Bradysia species, commonly known as fungus gnats, are ubiquitous in greenhouses, nurs- eries of horticultural plants, and commercial mushroom houses, causing significant economic losses. Moreover, the insects from the Bradysia genus have a well-documented role in plant pathogenic fungi transmission. Here, a study on the potential of Bradysia impatiens to acquire and transmit the peanut stunt virus (PSV) from plant to plant was undertaken. Four-day-old larvae of B. impatiens were exposed to PSV-P strain by feeding on virus-infected leaves of Nicotiana benthamiana and then transferred to healthy plants in laboratory conditions. Using the reverse transcription-polymerase chain reaction (RT-PCR), real-time PCR (RT-qPCR), and digital droplet PCR (RT-ddPCR), the PSV RNAs in the larva, pupa, and imago of B. impatiens were detected and quantified. The presence of PSV Citation: Budziszewska, M.; genomic RNA strands as well as viral coat protein in N. benthamiana, on which the viruliferous larvae Fr ˛ackowiak,P.; were feeding, was also confirmed at the molecular level, even though the characteristic symptoms of Obr˛epalska-St˛eplowska,A. -
The Distinct Plastid Genome Structure of Maackia Fauriei (Fabaceae: Papilionoideae) and Its Systematic Implications for Genistoids and Tribe Sophoreae
RESEARCH ARTICLE The distinct plastid genome structure of Maackia fauriei (Fabaceae: Papilionoideae) and its systematic implications for genistoids and tribe Sophoreae In-Su Choi, Byoung-Hee Choi* Department of Biological Sciences, Inha University, Incheon, Republic of Korea * [email protected] a1111111111 a1111111111 a1111111111 Abstract a1111111111 Traditionally, the tribe Sophoreae sensu lato has been considered a basal but also hetero- a1111111111 geneous taxonomic group of the papilionoid legumes. Phylogenetic studies have placed Sophoreae sensu stricto (s.s.) as a member of the core genistoids. The recently suggested new circumscription of this tribe involved the removal of traditional members and the inclu- sion of Euchresteae and Thermopsideae. Nonetheless, definitions and inter- and intra-taxo- OPEN ACCESS nomic issues of Sophoreae remain unclear. Within the field of legume systematics, the Citation: Choi I-S, Choi B-H (2017) The distinct molecular characteristics of a plastid genome (plastome) have an important role in helping plastid genome structure of Maackia fauriei to define taxonomic groups. Here, we examined the plastome of Maackia fauriei, belonging (Fabaceae: Papilionoideae) and its systematic implications for genistoids and tribe Sophoreae. to Sophoreae s.s., to elucidate the molecular characteristics of Sophoreae. Its gene con- PLoS ONE 12(4): e0173766. https://doi.org/ tents are similar to the plastomes of other typical legumes. Putative pseudogene rps16 of 10.1371/journal.pone.0173766 Maackia and Lupinus species imply independent functional gene loss from the genistoids. Editor: Giovanni G Vendramin, Consiglio Nazionale Our overall examination of that loss among legumes suggests that it is common among all delle Ricerche, ITALY major clades of Papilionoideae. -
The Resistance of Narrow-Leafed Lupin to Diaporthe Toxica Is Based on the Rapid Activation of Defense Response Genes
International Journal of Molecular Sciences Article The Resistance of Narrow-Leafed Lupin to Diaporthe toxica Is Based on the Rapid Activation of Defense Response Genes Michał Ksi ˛azkiewicz˙ 1,* , Sandra Rychel-Bielska 1,2 , Piotr Plewi ´nski 1 , Maria Nuc 3 , Witold Irzykowski 4 , Małgorzata J˛edryczka 4 and Paweł Krajewski 3 1 Department of Genomics, Institute of Plant Genetics, Polish Academy of Sciences, 60-479 Pozna´n,Poland; [email protected] (S.R.-B.); [email protected] (P.P.) 2 Department of Genetics, Plant Breeding and Seed Production, Wroclaw University of Environmental and Life Sciences, 50-363 Wrocław, Poland 3 Department of Biometry and Bioinformatics, Institute of Plant Genetics, Polish Academy of Sciences, 60-479 Pozna´n,Poland; [email protected] (M.N.); [email protected] (P.K.) 4 Department of Pathogen Genetics and Plant Resistance, Institute of Plant Genetics, Polish Academy of Sciences, 60-479 Pozna´n,Poland; [email protected] (W.I.); [email protected] (M.J.) * Correspondence: [email protected]; Tel.: +48-616-550-268 Abstract: Narrow-leafed lupin (Lupinus angustifolius L.) is a grain legume crop that is advantageous in animal nutrition due to its high protein content; however, livestock grazing on stubble may develop a lupinosis disease that is related to toxins produced by a pathogenic fungus, Diaporthe toxica. Two major unlinked alleles, Phr1 and PhtjR, confer L. angustifolius resistance to this fungus. Besides the introduction of these alleles into modern cultivars, the molecular mechanisms underlying resistance remained unsolved. In this study, resistant and susceptible lines were subjected to differential gene expression profiling in response to D. -
A Abutilon Mosaic Virus (Abmv), 8, 78 ACLSV. See Apple Chlorotic
Index A Array technologies, 137, 256 Abutilon mosaic virus (AbMV), 8, 78 Artichoke Italian latent, 11, 59 ACLSV. See Apple chlorotic leaf spot virus (ACLSV) Artichoke latent, 11, 60 Aegilops, spp., 11 Artichoke yellow ring spot, 11, 59 Agarose gel electrophoresis, 134–135, 293 Aseptic plantlet culture, 252–253 Agropyron elongatum,11 Asparagus bean mosaic virus,11 Alfalfa cryptic virus (ACV), 5, 91 Asparagus latent, 11, 59 Alfalfa mosaic virus (AMV), 68, 69, 76, 90, 91, 107, 109, Asparagus officinalis, 11, 252 140, 141, 169, 173, 175, 203, 244, 261–264, 288 Asparagus stunt, 28, 59 Alfalfa temperate, 10, 57 Asparagus virus I (AV1), 11, 60 Alfamo virus,63 Asparagus virus II (AV2), 11, 59 Alliaria petiolata,29 Assessment of crop losses, 67–69 Allium cepa, 19, 21, 174 Atriplex pacifica,25 Alphacryptovirus,57 Aureusvirus,57 Alphaflexiviridae,60 Australian Lucerne latent, 11, 59 Aluminum mulches for vector control, 196, 197 Avena fatua,11 Amaranthus albus,10 Avena sativa, 21, 192 Amaranthus caudatus,15 Avocado sun-blotch, 6, 11, 57, 104, 132, 286 Amaranthus hybridus, 15, 27, 168, 169 Avocado viruses 1–3, 11, 57 Amaranthus viridis,26 Avoidance of virus inoculum from infected seeds, AMV. See Alfalfa mosaic virus (AMV) 186–189 Andean potato latent virus (APLV), 18, 61, 169, 288 Avoiding of continuous cropping, 189–190 Antisense RNA, 259, 264–265, 311 Avoid spread from finished crops, 314 Antiviral activities in plants, 259, 265–266 Avoid spread from ornamental plants, 314 Anulavirus,57 Avoid spread within seedlings trays, 314 Aphid vectors, 8, 70, -
Nucleotide Sequence Analyses of Genomic Rnas of Peanut Stunt Virus Mi, the Type Strain Representative of a Novel PSV Subgroup from China
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Wageningen University & Research Publications Arch Virol (2005) 150: 1203–1211 DOI 10.1007/s00705-005-0492-2 Nucleotide sequence analyses of genomic RNAs of Peanut stunt virus Mi, the type strain representative of a novel PSV subgroup from China Brief Report L. Y. Yan1,2,Z.Y.Xu1, R. Goldbach2, C. Kunrong1, and M. Prins2 1Ministry Key Laboratory of Genetic Improvement for Oil Crops, Oil Crop Research Institute, Chinese Academy of Agricultural Sciences, Wuhan, P.R. China 2Laboratory of Virology, Wageningen University, Wageningen, The Netherlands Received December 10, 2004; accepted January 4, 2005 Published online March 3, 2005 c Springer-Verlag 2005 Summary. The complete nucleotide sequence of Peanut stunt virus strain Mi (PSV-Mi) from China was determined and compared to other viruses of the genus Cucumovirus. The tripartite genome of PSV-Mi encoded five open reading frames (ORFs) typical of cucumoviruses. Distance analyses of four ORFs indicated that PSV-Mi differed sufficiently in nucleotide sequence from other PSV strains of subgroups I and II to warrant establishment of a third subgroup of PSV. ∗ Peanut stunt virus (PSV) occurs worldwide, infecting primarily legume plants including important crops such as peanut (Arachis hypogaea L.), bean (Phase- olus vulgaris L.), soybean (Glycine max (L.) Merr.), pea (Pisum sativum L.), alfalfa (Medicago sativa L.), yellow lupine (Lupinus luteus L.) and various clovers [12, 21]. PSV is an economically important threat to peanut production in China. Severe epidemics of virus diseases caused by PSV along with Peanut stripe virus (PStV) and Cucumber mosaic virus (CMV) have substantially reduced peanut yields in the major peanut growing areas in northern China since the 1970 s [22]. -
Integrated Analysis of Small RNA, Transcriptome and Degradome
Integrated analysis of small RNA, transcriptome and degradome sequencing provides new insights into oral development and abscission in yellow lupine (Lupines luteus L.) Paulina Glazinska ( [email protected] ) Nicolaus Copernicus University https://orcid.org/0000-0002-8299-2976 Milena Kulasek Nicolaus Copernicus University Wojciech Glinkowski Nicolaus Copernicus University Waldemar Wojciechowski Nicolaus Copernicus University Jan Kosiński Adam Mickiewicz University Research article Keywords: Yellow lupine, miRNA, phased siRNA, RNA-seq, degradome, sRNA, ower development, abscission, auxin Posted Date: May 14th, 2019 DOI: https://doi.org/10.21203/rs.2.9588/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Version of Record: A version of this preprint was published at International Journal of Molecular Sciences on October 16th, 2019. See the published version at https://doi.org/10.3390/ijms20205122. Page 1/64 Abstract Background Yellow lupine (Lupinus luteus L., Taper c.) is an important legume crop. However, its ower development and pod formation are often affected by excessive abscission. Organ detachment occurs within the abscission zone (AZ) and in L. luteus primarily affects owers formed at the top of the inorescence. The top owers’ fate appears determined before anthesis. The organ development and abscission mechanisms utilize a complex molecular network, not yet not fully understood, especially as to the role of miRNAs and siRNAs. We aimed at identifying differentially expressed (DE) small ncRNAs in lupine by comparing small RNA-seq libraries generated from developing upper and lower raceme owers, and ower pedicels with active and inactive AZs. Their target genes were also identied using transcriptome and degradome sequencing. -
Lupinus Albus L
Cadmium phytoextraction capacity of white lupine (Lupinus albus L.) and narrow-leafed lupine (Lupinus angustifolius L.) in three contrasting agroclimatic conditions of Chile Nallely Trejo1, Iván Matus2, Alejandro del Pozo1, Ingrid Walter3, and Juan Hirzel2* ABSTRACT INTRODUCTION The phytoextraction process implies the use of plants to Cadmium is one of the most important soil contaminants because promote the elimination of metal contaminants in the soil. In it is toxic for many living organisms, including cultivated plants. fact, metal-accumulating plants are planted or transplanted Human health is therefore threatened when Cd is bioaccumulated in metal-contaminated soil and cultivated in accordance in the food chain (UNEP, 2008). The World Health Organization with established agricultural practices. The objective of (WHO) considers toxic a daily intake of 1 µg kg-1 body weight or the present study was to evaluate the productivity and Cd 70 µg Cd for an average person (WHO, 2010). Cadmium exposure phytoextraction capacity of white lupine (Lupinus albus and accumulation mostly affects kidneys and liver in the human L.) and narrow-leafed lupine (Lupinus angustifolius L.), as body and it can also affect the skeletal system through a disease well as the effect on residual Cd concentration in the soil. called Itai-Itai that was first detected in Japan in individuals living Both species of lupines were grown at three CdCl2 rates near Cd contaminated rice fields (Phillips and Tudoreanu, 2011). -1 (0, 1, and 2 mg kg ), under three agroclimatic conditions Industrial and mining activities are the main sources of in Chile in 2013. In the arid zone (Pan de Azúcar, 73 Cd liberated into the air, water, and soil (UNEP, 2008). -
Complete Nucleotide Sequence of a Polish Strain of Peanut Stunt Virus (PSV-P) That Is Related to but Not a Typical Member of Subgroup I
Vol. 55 No. 4/2008, 731–739 on-line at: www.actabp.pl Regular paper Complete nucleotide sequence of a Polish strain of Peanut stunt virus (PSV-P) that is related to but not a typical member of subgroup I Aleksandra Obrepalska-Steplowska1, Marta Budziszewska1 and Henryk Pospieszny2 1Interdepartmental Laboratory of Molecular Biology, and 2Department of Virology and Bacteriology, Institute of Plant Protection — National Research Institute, Poznań, Poland Received: 26 June, 2008; revised: 22 October, 2008; accepted: 05 December, 2008 available on-line: 16 December, 2008 Peanut stunt virus (PSV) is a common legume pathogen present worldwide. It is also infectious for many other plants including peanut and some vegetables. Viruses of this species are classi- fied at present into three subgroups based on their serology and nucleotide homology. Some of them may also carry an additional subviral element — satellite RNA. Analysis of the full genome sequence of a Polish strain — PSV-P — associated with satRNA was performed and showed that it may be classified as a derivative of the subgroup I sharing 83.9–87.9% nucleotide homology with other members of this subgroup. A comparative study of sequenced PSV strains indicates that PSV-P shows the highest identity level with PSV-ER or PSV-J depending on the region used for analysis. Phylogenetic analyses, on the other hand, have revealed that PSV-P is related to rep- resentatives of the subgroup I to the same degree, with the exception of the coat protein coding sequence where PSV-P is clustered together with PSV-ER. Keywords: Peanut stunt virus, satellite RNA, sequence analysis INTRODUCTION with the genomic or subgenomic viral RNA strands (Rossinck et al., 1992). -
A Fragment of Chloroplast DNA Was Transferred Horizontally, Probably from Non-Eudicots, to Mitochondrial Genome of Phaseolus
Plant Molecular Biology 56: 811–820, 2004. 811 Ó 2004 Springer. Printed in the Netherlands. A fragment of chloroplast DNA was transferred horizontally, probably from non-eudicots, to mitochondrial genome of Phaseolus Magdalena Woloszynska1,*, Tomasz Bocer1, Pawel Mackiewicz2, Hanna Janska1 1Institute of Biochemistry and Molecular Biology, University of Wroclaw, Department of Cell Molecular Biology, Wroclaw, Poland (*author for correspondence; e-mail [email protected]); 2Institute of Genetics and Microbiology, University of Wroclaw, Department of Genomics, Wroclaw, Poland Received 10 August 2004; accepted in revised form 21 October 2004 Key words: chloroplast trnA gene, horizontal gene transfer, intracellular gene transfer, plant mitochondrial DNA Abstract The mitochondrial genomes of some Phaseolus species contain a fragment of chloroplast trnA gene intron, named pvs-trnA for its location within the Phaseolus vulgaris sterility sequence (pvs). The purpose of this study was to determine the type of transfer (intracellular or horizontal) that gave rise to pvs-trnA. Using a PCR approach we could not find the respective portion of the trnA gene as a part of pvs outside the Phaseolus genus. However, a BLAST search revealed longer fragments of trnA present in the mitochondrial genomes of some Citrus species, Helianthus annuus and Zea mays. Basing on the identity or near-identity between these mitochondrial sequences and their chloroplast counterparts we concluded that they had relocated from chloroplasts to mitochondria via recent, independent, intracellular DNA transfers. In contrast, pvs-trnA displayed a relatively higher sequence divergence when compared with its chloroplast counterpart from Phaseolus vulgaris. Alignment of pvs-trnA with corresponding trnA fragments from 35 plant species as well as phylogenetic analysis revealed that pvs-trnA grouped with non-eudicot sequences and was well separated from all Fabales sequences. -
New Legume Hosts of Phakopsora Pachyrhizi Based on Greenhouse Evaluations
e-Xtra* New Legume Hosts of Phakopsora pachyrhizi Based on Greenhouse Evaluations T. L. Slaminko, Department of Crop Sciences, University of Illinois, Urbana 61801; M. R. Miles, United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Urbana, IL 61801; R. D. Frederick and M. R. Bonde, USDA-ARS Foreign Disease-Weed Science Research Unit, Ft. Detrick, MD 21702; and G. L. Hartman, USDA-ARS and Department of Crop Sciences, University of Illinois, Urbana 61801 MATERIALS AND METHODS ABSTRACT Species selection. All species tested be- Slaminko, T. L., Miles, M. R., Frederick, R. D., Bonde, M. R., and Hartman, G. L. 2008. New long to the legume subfamily Papilion- legume hosts of Phakopsora pachyrhizi based on greenhouse evaluations. Plant Dis. 92:767-771. oideae and all occur in the southern United States or in major soybean-producing Phakopsora pachyrhizi, the causal organism of soybean rust, was first found in the continental states (25) with the exception of previously United States in 2004 and has been found on soybean, kudzu, Florida beggarweed, and three reported hosts and four unscreened species Phaseolus species in the field. The pathogen has been reported to occur on more than 90 legume in Teramnus, the genus most closely re- species worldwide and it is likely to infect native and introduced legume species in the United lated to Glycine (11). Seed was ordered States. The objective of this study was to determine if 176 species representing 57 genera of legumes, the majority of which are either native or naturalized to soybean-growing areas of the from several repositories in the USDA- United States, could be hosts of P.