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Adaptation to Deep-Sea Chemosynthetic Environments As Revealed by Mussel Genomes
ARTICLES PUBLISHED: 3 APRIL 2017 | VOLUME: 1 | ARTICLE NUMBER: 0121 Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes Jin Sun1, 2, Yu Zhang3, Ting Xu2, Yang Zhang4, Huawei Mu2, Yanjie Zhang2, Yi Lan1, Christopher J. Fields5, Jerome Ho Lam Hui6, Weipeng Zhang1, Runsheng Li2, Wenyan Nong6, Fiona Ka Man Cheung6, Jian-Wen Qiu2* and Pei-Yuan Qian1, 7* Hydrothermal vents and methane seeps are extreme deep-sea ecosystems that support dense populations of specialized macro benthos such as mussels. But the lack of genome information hinders the understanding of the adaptation of these ani- mals to such inhospitable environments. Here we report the genomes of a deep-sea vent/seep mussel (Bathymodiolus plati- frons) and a shallow-water mussel (Modiolus philippinarum). Phylogenetic analysis shows that these mussel species diverged approximately 110.4 million years ago. Many gene families, especially those for stabilizing protein structures and removing toxic substances from cells, are highly expanded in B. platifrons, indicating adaptation to extreme environmental conditions. The innate immune system of B. platifrons is considerably more complex than that of other lophotrochozoan species, including M. philippinarum, with substantial expansion and high expression levels of gene families that are related to immune recognition, endocytosis and caspase-mediated apoptosis in the gill, revealing presumed genetic adaptation of the deep-sea mussel to the presence of its chemoautotrophic endosymbionts. A follow-up metaproteomic analysis of the gill of B. platifrons shows metha- notrophy, assimilatory sulfate reduction and ammonia metabolic pathways in the symbionts, providing energy and nutrients, which allow the host to thrive. Our study of the genomic composition allowing symbiosis in extremophile molluscs gives wider insights into the mechanisms of symbiosis in other organisms such as deep-sea tubeworms and giant clams. -
The C-Floor and Zones
The C-Floor and zones Table of Contents ` ❖ The ocean zones ❖ Sunlight zone and twilight zone ❖ Midnight and Abyssal zone ❖ The hadal zone ❖ The c-floor ❖ The c-floor definitions ❖ The c-floor definitions pt.2 ❖ Cites ❖ The end The ocean zones 200 meters deep 1,000 Meters deep 4,000 Meters deep 6,000 Meters deep 10,944 meters deep Sunlight zone Twilight zone ❖ The sunlight zone is 200 meters from the ocean's ❖ The twilight zone is about 1,000 meters surface deep from the ❖ Animals that live here ocean's surface sharks, sea turtles, ❖ Animals that live jellyfish and seals here are gray ❖ Photosynthesis normally whales, greenland occurs in this part of the Shark and clams ocean ❖ The twilight get only a faint amount of sunlight DID YOU KNOW Did you know That no plants live That the sunlight zone in the twilight zone could be called as the because of the euphotic and means well lit amount of sunlight in greek Midnight zone Abyssal zone ❖ The midnight zone is ❖ The abyssal zone is 4,000 meters from 6,000 meters from the the ocean's surface ocean’s surface ❖ Animals that live in ❖ Animals that live in the the midnight zone Abyssal zone are fangtooth fish, pacific are, vampire squid, viperfish and giant snipe eel and spider crabs anglerfish ❖ Supports only ❖ Animals eat only the DID YOU KNOW invertebrates and DID YOU KNOW leftovers that come That only 1 percent of light fishes That most all the way from the travels through animals are sunlight zone to the the midnight zone either small or midnight zone bioluminescent The Hadal Zone (Trench ● The Hadal Zone is 10,944 meters under the ocean ● Snails, worms, and sea cucumbers live in the hadal zone ● It is pitch black in the Hadal Zone The C-Floor The C-Floor Definitions ❖ The Continental Shelf - The flat part where people can walk. -
Tracking Past Earthquakes in the Sediment Record Testing and Developing Submarine Paleoseismology in the Deep Sea (JTRACK‐Paleoseismology)
IODP Expedition 386: Japan Trench Paleoseismology TRACKing past earthquakes in the sediment record Testing and developing submarine Paleoseismology in the deep sea (JTRACK‐Paleoseismology) IODP Expedition 386: Japan Trench Paleoseismology Co‐Chief Scientists: Michael Strasser (University of Innsbruck, Austria) Ken Ikehara (Geological Survey of Japan, AIST) Expedition Project Manager: Jez Everest, British Geological Survey Lena Maeda, JAMSTEC (MarE3 Liasion) JpGU 2020 2020-07-12 Michi Strasser IODP Expedition 386: Japan Trench Paleoseismology Short historical and even shorter instrumental records limit our perspective of earthquake maximum magnitude and recurrence Examining prehistoric events preserved in the geological record is essential to understand long‐term history of giant earthquakes JpGU 2020 2020-07-12 Michi Strasser IODP Expedition 386: Japan Trench Paleoseismology “Submarine paleoseismology” is a promising approach to investigate deposits from the deep sea, where earthquakes leave traces preserved in stratigraphic succession. Submarine paleoseismology study sites (numbers) compiled during Magellan Plus Workshop in Zürich 2015 (McHugh et al., 2016; Strasser et al., 2016) JpGU 2020 2020-07-12 Michi Strasser IODP Expedition 386: Japan Trench Paleoseismology Challenges in Submarine Paleoseismology Can we distinguish different earthquake events and types from the sedimentary records? Is there an earthquake magnitude threshold for a given signal/pattern in the geological record? Does record sensitivity change by margin segmentation, sedimentation and/or through time? Can we link the sedimentary signal to the earthquake rupture characteristics? McHugh et al., 2016; Strasser et al., 2016) JpGU 2020 2020-07-12 Michi Strasser IODP Expedition 386: Japan Trench Paleoseismology IODP is uniquely positioned to provide data by coring sequences comprising continuous depositional conditions and records of earthquakes occurrence over longer time periods. -
Microbial Community and Geochemical Analyses of Trans-Trench Sediments for Understanding the Roles of Hadal Environments
The ISME Journal (2020) 14:740–756 https://doi.org/10.1038/s41396-019-0564-z ARTICLE Microbial community and geochemical analyses of trans-trench sediments for understanding the roles of hadal environments 1 2 3,4,9 2 2,10 2 Satoshi Hiraoka ● Miho Hirai ● Yohei Matsui ● Akiko Makabe ● Hiroaki Minegishi ● Miwako Tsuda ● 3 5 5,6 7 8 2 Juliarni ● Eugenio Rastelli ● Roberto Danovaro ● Cinzia Corinaldesi ● Tomo Kitahashi ● Eiji Tasumi ● 2 2 2 1 Manabu Nishizawa ● Ken Takai ● Hidetaka Nomaki ● Takuro Nunoura Received: 9 August 2019 / Revised: 20 November 2019 / Accepted: 28 November 2019 / Published online: 11 December 2019 © The Author(s) 2019. This article is published with open access Abstract Hadal trench bottom (>6000 m below sea level) sediments harbor higher microbial cell abundance compared with adjacent abyssal plain sediments. This is supported by the accumulation of sedimentary organic matter (OM), facilitated by trench topography. However, the distribution of benthic microbes in different trench systems has not been well explored yet. Here, we carried out small subunit ribosomal RNA gene tag sequencing for 92 sediment subsamples of seven abyssal and seven hadal sediment cores collected from three trench regions in the northwest Pacific Ocean: the Japan, Izu-Ogasawara, and fi 1234567890();,: 1234567890();,: Mariana Trenches. Tag-sequencing analyses showed speci c distribution patterns of several phyla associated with oxygen and nitrate. The community structure was distinct between abyssal and hadal sediments, following geographic locations and factors represented by sediment depth. Co-occurrence network revealed six potential prokaryotic consortia that covaried across regions. Our results further support that the OM cycle is driven by hadal currents and/or rapid burial shapes microbial community structures at trench bottom sites, in addition to vertical deposition from the surface ocean. -
New Records of Three Deep-Sea Bathymodiolus Mussels (Bivalvia: Mytilida: Mytilidae) from Hydrothermal Vent and Cold Seeps in Taiwan
352 Journal of Marine Science and Technology, Vol. 27, No. 4, pp. 352-358 (2019) DOI: 10.6119/JMST.201908_27(4).0006 NEW RECORDS OF THREE DEEP-SEA BATHYMODIOLUS MUSSELS (BIVALVIA: MYTILIDA: MYTILIDAE) FROM HYDROTHERMAL VENT AND COLD SEEPS IN TAIWAN Meng-Ying Kuo1, Dun- Ru Kang1, Chih-Hsien Chang2, Chia-Hsien Chao1, Chau-Chang Wang3, Hsin-Hung Chen3, Chih-Chieh Su4, Hsuan-Wien Chen5, Mei-Chin Lai6, Saulwood Lin4, and Li-Lian Liu1 Key words: new record, Bathymodiolus, deep-sea, hydrothermal vent, taiwanesis (von Cosel, 2008) is the only reported species of cold seep, Taiwan. this genus from Taiwan. It was collected from hydrothermal vents near Kueishan Islet off the northeast coast of Taiwan at depths of 200-355 m. ABSTRACT Along with traditional morphological classification, mo- The deep sea mussel genus, Bathymodiolus Kenk & Wilson, lecular techniques are commonly used to study the taxonomy 1985, contains 31 species, worldwide. Of which, one endemic and phylogenetic relationships of deep sea mussels. Recently, species (Bathymodiolus taiwanesis) was reported from Taiwan the complete mitochondrial genomes have been sequenced (MolluscaBase, 2018). Herein, based on the mitochondrial COI from mussels of Bathymodiolus japonicus, B. platifrons and results, we present 3 new records of the Bathymodiolus species B. septemdierum (Ozawa et al., 2017). Even more, the whole from Taiwan, namely Bathymodiolus platifrons, Bathymodiolus genome of B. platifrons was reported with sequence length of securiformis, and Sissano Bathymodiolus sp.1 which were collected 1.64 Gb nucleotides (Sun et al., 2017). from vent or seep environments at depth ranges of 1080-1380 Since 2013, under the Phase II National energy program of m. -
Large and Repeating Slow Slip Events in the Izu-Bonin Arc from Space
LARGE AND REPEATING SLOW SLIP EVENTS IN THE IZU-BONIN ARC FROM SPACE GEODETIC DATA (伊豆小笠原弧における巨大スロー地震および繰り返し スロー地震の宇宙測地学的研究) by Deasy Arisa Department of Natural History Sciences Graduate School of Science, Hokkaido University September, 2016 Abstract The Izu-Bonin arc lies along the convergent boundary where the Pacific Plate subducts beneath the Philippine Sea Plate. In the first half of my three-year doctoral course, I focused on the slow deformation on the Izu Islands, and later in the second half, I focused on the slow deformation on the Bonin Islands. The first half of the study, described in Chapter V, is published as a paper, "Transient crustal movement in the northern Izu–Bonin arc starting in 2004: A large slow slip event or a slow back-arc rifting event?". Horizontal velocities of continuous Global Navigation Satellite System (GNSS) stations on the Izu Islands move eastward by up to ~1 cm/year relative to the stable part of the Philippine Sea Plate suggesting active back-arc rifting behind the northern part of the arc. We confirmed the eastward movement of the Izu Islands explained by Nishimura (2011), and later discussed the sudden accelerated movement in the Izu Islands detected to have occurred in the middle of 2004. I mainly discussed this acceleration and make further analysis to find out the possible cause of this acceleration. Here I report that such transient eastward acceleration, starting in the middle of 2004, resulted in ~3 cm extra movements in three years. I compare three different mechanisms possibly responsible for this transient movement, i.e. (1) postseismic movement of the 2004 September earthquake sequence off the Kii Peninsula far to the west, (2) a temporary activation of the back-arc rifting to the west dynamically triggered by seismic waves from a nearby earthquake, and (3) a large slow slip event in the Izu-Bonin Trench to the east. -
M208p147.Pdf
MARINE ECOLOGY PROGRESS SERIES Vol. 208: 147–155, 2000 Published December 8 Mar Ecol Prog Ser Phylogenetic characterization of endosymbionts in three hydrothermal vent mussels: influence on host distributions Yoshihiro Fujiwara1,*, Ken Takai2, Katsuyuki Uematsu3, Shinji Tsuchida1, James C. Hunt1, Jun Hashimoto1 1Marine Ecosystems Research Department, Japan Marine Science and Technology Center (JAMSTEC), 2-15 Natsushima, Yokosuka 237-0061, Japan 2Frontier Research Program for Deep-Sea Environment, Japan Marine Science and Technology Center (JAMSTEC), 2-15 Natsushima, Yokosuka 237-0061, Japan 3Marine Work Japan Co., 2-15 Natsushima, Yokosuka 237-0061, Japan ABSTRACT: The bacterial endosymbionts of 3 hydrothermal vent mussels from Japanese waters were characterized by transmission electron microscopic (TEM) observation and phylogenetic analy- ses of 16S ribosomal RNA gene sequences. Endosymbionts of Bathymodiolus septemdierum were related to sulfur-oxidizing bacteria (thioautotrophs), while endosymbionts of B. platifrons and B. japonicus were related to methane-oxidizing bacteria (methanotrophs). This is the first report of deep-sea mussels containing only methanotrophs (lacking thioautotrophs) from hydrothermal vents. Comparison of methane and hydrogen sulfide concentrations in end-member fluids from deep-sea hydrothermal vents indicated that methane concentrations were much higher in habitats containing Bathymodiolus spp. which harbored only methanotrophs than in other habitats of hydrothermal vent mussels. The known distribution of other -
Fully-Coupled Simulations of Megathrust Earthquakes and Tsunamis in the Japan Trench, Nankai Trough, and Cascadia Subduction Zone
Noname manuscript No. (will be inserted by the editor) Fully-coupled simulations of megathrust earthquakes and tsunamis in the Japan Trench, Nankai Trough, and Cascadia Subduction Zone Gabriel C. Lotto · Tamara N. Jeppson · Eric M. Dunham Abstract Subduction zone earthquakes can pro- strate that horizontal seafloor displacement is a duce significant seafloor deformation and devas- major contributor to tsunami generation in all sub- tating tsunamis. Real subduction zones display re- duction zones studied. We document how the non- markable diversity in fault geometry and struc- hydrostatic response of the ocean at short wave- ture, and accordingly exhibit a variety of styles lengths smooths the initial tsunami source relative of earthquake rupture and tsunamigenic behavior. to commonly used approach for setting tsunami We perform fully-coupled earthquake and tsunami initial conditions. Finally, we determine self-consistent simulations for three subduction zones: the Japan tsunami initial conditions by isolating tsunami waves Trench, the Nankai Trough, and the Cascadia Sub- from seismic and acoustic waves at a final sim- duction Zone. We use data from seismic surveys, ulation time and backpropagating them to their drilling expeditions, and laboratory experiments initial state using an adjoint method. We find no to construct detailed 2D models of the subduc- evidence to support claims that horizontal momen- tion zones with realistic geometry, structure, fric- tum transfer from the solid Earth to the ocean is tion, and prestress. Greater prestress and rate-and- important in tsunami generation. state friction parameters that are more velocity- weakening generally lead to enhanced slip, seafloor Keywords tsunami; megathrust earthquake; deformation, and tsunami amplitude. -
The Hadal Zone Deep-Sea Trenches
The Hadal Zone Deep-sea Trenches •! Hadal - Ocean habitats deeper than 6,000m •! Deep-sea trenches comprise the overwhelming majority of these habitats •! Deepest: Mariana Trench – 10,998 m The Hadal Zone Map > 6000 m (Not only trenches!) World Hadal Trenches (Jamieson et al. 2009) 37 deep-sea trenches Most in the Pacific, deepest 9 in the Pacific Trench Environment Temperature: 1.0-2.5oC Temperature increases below 4000 m due to adiabatic heating South Pacific trench temperatures increase from 1.16 to 1.91oC between 6000 and 10000 m (40%) North Pacific trench temperatures rise from 1.67 to 2.40 oC between 6000 and 10000 m. (30%) Tonga Trench Temperature (Jamieson et al. 2009 TREE) Temperatures in trenches are comparable to 3000 m cont. margin Challenger Deep Cross Section CTD Casts Temperature and Salinity Taira et al. 2005 J. Of Oceanography Flow regime: Deep currents ventilate trenches with values up to 8.1 cm/sec in the Challenger Deep Up to 32 cm/s in other trenches Currents exhibit lunar and semi-lunar tidal cycles Mean oxygen in N. Pacific trenches 3.43 ml L-1 Why is the Mariana Trench so deep? 1. Plate configuration – Pacific plate is old and cold and plunging beneath the Philippine plate. The Philippine plate is young and soft and is carried downward with the Pacific plate. 2. Remoteness from sediment sources – it doesn’t fill up over time! Trench Biology – Historical (courtesy of L. Blankenship) •! Challenger – sounding to 8200 m (no fauna) •! Incidental collection of arenaceous foraminiferan at 7228 m Japan Trench (Brady 1984 – 14 spp.) •! In 1899, the “Albatross” trawled the Tonga Trench deeper waters for the first time. -
Pseudoliparis Swirei Sp. Nov.: a Newly-Discovered Hadal Snailfish (Scorpaeniformes: Liparidae) from the Mariana Trench
Zootaxa 4358 (1): 161–177 ISSN 1175-5326 (print edition) http://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2017 Magnolia Press ISSN 1175-5334 (online edition) https://doi.org/10.11646/zootaxa.4358.1.7 http://zoobank.org/urn:lsid:zoobank.org:pub:84494502-9E85-49DA-8530-092AF8918D88 Pseudoliparis swirei sp. nov.: A newly-discovered hadal snailfish (Scorpaeniformes: Liparidae) from the Mariana Trench MACKENZIE E. GERRINGER1, THOMAS D. LINLEY2, ALAN J. JAMIESON2, ERICA GOETZE1 & JEFFREY C. DRAZEN1 1Dept. Of Oceanography, University of Hawaiʻi at Mānoa, HI 96822. E-mail: [email protected], [email protected], [email protected] 2School of Marine Science and Technology, Ridley Building, Newcastle University, Newcastle Upon Tyne, UK. NE1 7RU. E-mail: [email protected], [email protected] Abstract Pseudoliparis swirei sp. nov. is described from 37 individuals collected in the Mariana Trench at depths 6898–7966 m. The collection of this new species is the deepest benthic capture of a vertebrate with corroborated depth data. Here, we describe P. swirei sp. nov. and discuss aspects of its morphology, biology, distribution, and phylogenetic relationships to other hadal liparids based on analysis of three mitochondrial genes. Pseudoliparis swirei sp. nov. is almost certainly en- demic to the Mariana Trench, as other hadal liparids appear isolated to a single trench/ trench system in the Kermadec, Macquarie, South Sandwich, South Orkney, Peru-Chile, Kurile-Kamchatka and Japan trenches. The discovery of another hadal liparid species, apparently abundant at depths where other fish species are few and only found in low numbers, pro- vides further evidence for the dominance of this family among the hadal fish fauna. -
Ocean Zones Adapted from USC Sea Grant “Island Explorers” by Dr
2011 COSEE-West Introduction to Ocean Zones Adapted from USC Sea Grant “Island Explorers” by Dr. Rachel Kennison, COSEE West Co- Director Grade: K-12 Group Size: 30 students Time: 55 minutes BACKGROUND In order to begin to understand life below the seafloor, it is essential to grasp that the ocean has many different habitats that are defined by the physical and chemical properties that exist at different depths. The purpose of this activity is to identify and describe different zones of the ocean and the organisms that live there. The ocean is divided into 5 main zones from the surface to the depths where light can no longer penetrate. These zones are characterized by different physical and chemical properties, such as quantity and quality of light, pressure and temperature. These properties affect what life forms can exist within those limitations. This activity introduces the microbial environment in the deep ocean, and can be the foundation to explain geothermal processes, and the evolution of bacteria. Labels and features to include on diagram: Photic (sunlit) zone Aphotic (no light) zone Neritic system Benthic realm Pelagic realm Bathyal zone Abyssal zone Hadal zone Shoreline Sea level Coral reef Continental Shelf Continental slope Continental rise Submarine Canyon Abyssal Plain Seamount Guyot Trench Mid-ocean Ridge Rift Valley Hydrothermal vent Sub-seafloor sediment Sub-seafloor aquifer A useful reference for your ocean zones diagram is at http://geosci.sfsu.edu/courses/geol102/ex9.html Two basic guides for the zones: (Source: Sea -
Mw9- Class Earthquakes Versus Smaller Earthquakes and Other Driving Mechanisms
Expedition Co-chief Scientists Prof. Michael Strasser Michael Strasser is a professor in sedimentary geology at the University of Innsbruck in Austria. His research focuses on the quantitative characterization of dynamic sedimentary and tectonic processes and related geohazards, as unraveled from the event-stratigraphic record of lakes and ocean margins. “Michi” has participated in 5 ocean drilling expeditions to subduction zones (including Nankai Trough Seismogenic Zone The Japan Trench Experiment Expedition 338 as Co-chief) and has received the 2017 AGU/JpGU Asahiko Taira International Scientific Ocean Paleoseismology Drilling Research Prize for his outstanding contributions 6 3 to the investigation of submarine mass movements using Deposit (x 10 m ) multidisciplinary approaches through scientific ocean drilling. Expedition His work on submarine paleoseismology has focused on the Japan Trench since the 2011 Tohoku-oki earthquake, Volume 70 after which he lead two research cruises to characterize the offshore impact of the earthquake on the hadal sedimentary environment. Dr. Ken Ikehara Error Ken Ikehara is a prime senior researcher in the Research Institute of Geology 60 and Geoinformation, Geological Survey of Japan, AIST. His research focuses Mid-value on sedimentology and marine geology of active margins, with special interests in sedimentary processes, formation and preservation of event deposits, Quaternary paleoceanography and Asian monsoon fluctuation. His work on submarine 50 paleoseismology has concentrated not only on the Japan Trench but also on the Nankai Trough, Ryukyu Trench and northern Japan Sea. Ken attended more than 80 survey cruises, mainly around the Japanese islands, including US Sumatra-Andaman Trench, German-Japan Japan Trench, 2000 French Antarctic Ocean cruises, and the IODP Exp 346 Asian monsoon.