Gold-Catalyzed Addition of Carboxylic Acids to Alkynes and Allenes
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(+)-Obafluorin, a B-Lactone Antibiotic
Illinois Wesleyan University Digital Commons @ IWU Honors Projects Chemistry 4-26-1996 Pursuit of a Chiral Amino Aldehyde Intermediate in the Synthesis of (+)-Obafluorin, a B-Lactone Antibiotic Jim Cwik '96 Illinois Wesleyan University Follow this and additional works at: https://digitalcommons.iwu.edu/chem_honproj Part of the Chemistry Commons Recommended Citation Cwik '96, Jim, "Pursuit of a Chiral Amino Aldehyde Intermediate in the Synthesis of (+)- Obafluorin, a B-Lactone Antibiotic" (1996). Honors Projects. 15. https://digitalcommons.iwu.edu/chem_honproj/15 This Article is protected by copyright and/or related rights. It has been brought to you by Digital Commons @ IWU with permission from the rights-holder(s). You are free to use this material in any way that is permitted by the copyright and related rights legislation that applies to your use. For other uses you need to obtain permission from the rights-holder(s) directly, unless additional rights are indicated by a Creative Commons license in the record and/ or on the work itself. This material has been accepted for inclusion by faculty at Illinois Wesleyan University. For more information, please contact [email protected]. ©Copyright is owned by the author of this document. Pursuit of a Chiral Amino Aldehyde Intermediate in the Synthesis of (+)-Obafluorin, a p-Lactone Antibiotic Jim Cwik Dr. Jeffrey A. Frick, Research Advisor Submitted in Partial Fulfillment of the Requirement for Research Honors in Chemistry and Chemistry 499 Illinois Wesleyan University April 26, 1996 - Table of Contents I. List of Spectral Data , 2 II. Abstract. 3 III. Background 4 IV. Introduction 6 V. -
De Novo Biosynthesis of Terminal Alkyne-Labeled Natural Products
De novo biosynthesis of terminal alkyne-labeled natural products Xuejun Zhu1,2, Joyce Liu2,3, Wenjun Zhang1,2,4* 1Department of Chemical and Biomolecular Engineering, 2Energy Biosciences Institute, 3Department of Bioengineering, University of California, Berkeley, CA 94720, USA. 4Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA. *e-mail:[email protected] 1 Abstract: The terminal alkyne is a functionality widely used in organic synthesis, pharmaceutical science, material science, and bioorthogonal chemistry. This functionality is also found in acetylenic natural products, but the underlying biosynthetic pathways for its formation are not well understood. Here we report the characterization of the first carrier protein- dependent terminal alkyne biosynthetic machinery in microbes. We further demonstrate that this enzymatic machinery can be exploited for the in situ generation and incorporation of terminal alkynes into two natural product scaffolds in E. coli. These results highlight the prospect for tagging major classes of natural products, including polyketides and polyketide/non-ribosomal peptide hybrids, using biosynthetic pathway engineering. 2 Natural products are important small molecules widely used as drugs, pesticides, herbicides, and biological probes. Tagging natural products with a unique chemical handle enables the visualization, enrichment, quantification, and mode of action study of natural products through bioorthogonal chemistry1-4. One prevalent bioorthogonal reaction is -
The Synthesis of Molecules Containing Quaternary Stereogenic Centers Via the Intramolecular Asymmetric Heck Reaction
The Synthesis of Molecules Containing Quaternary Stereogenic Centers via the Intramolecular Asymmetric Heck Reaction Reported by Eric P. Gillis April 19, 2007 INTRODUCTION The enantioselective synthesis of compounds containing quaternary stereocenters continues to be a challenging endeavor and is a field of intense interest and development.1,,,,2 3 4 5 From the perspective of methods development, the asymmetric synthesis of compounds containing quaternary stereocenters poses a distinct challenge due to the sterically congested environment in which C-C bonds must be formed and stereochemical information must be transferred. Existing asymmetric methods have been applied successfully in desymmetrization processes that transform prochiral quaternary centers into stereodefined quaternary centers. However, for processes in which a quaternary stereocenter is created directly via a C-C bond forming reaction, only a few asymmetric reactions have been fruitful. The diversity in the array of methods that exist for the synthesis of compounds containing quaternary stereocenters is necessitated in part because of the number of distinct quaternary stereocenter architectures that are possible (Scheme 1). The construction of acyclic quaternary stereocenters is particularly challenging due to the number of degrees of freedom associated with these structures. However, promising results for the construction of these stereocenters via allylation,6 allylic alklyation,7 and Michael addition8 have been reported recently. For the synthesis of cyclic quaternary stereocenters a number of methods have been employed successfully including the intramolecular Heck reaction,9 alkylation,10 arylation,11 and Michael addition12. Fused bicyclic quaternary stereocenters are generally accessed via the desymmetrization of a prochiral quaternary center. In this regard, theoretically any SCHEME 1. -
Phospholipid:Diacylglycerol Acyltransferase: an Enzyme That Catalyzes the Acyl-Coa-Independent Formation of Triacylglycerol in Yeast and Plants
Phospholipid:diacylglycerol acyltransferase: An enzyme that catalyzes the acyl-CoA-independent formation of triacylglycerol in yeast and plants Anders Dahlqvist*†‡, Ulf Ståhl†§, Marit Lenman*, Antoni Banas*, Michael Lee*, Line Sandager¶, Hans Ronne§, and Sten Stymne¶ *Scandinavian Biotechnology Research (ScanBi) AB, Herman Ehles Va¨g 2 S-26831 Svaloˆv, Sweden; ¶Department of Plant Breeding Research, Swedish University of Agricultural Sciences, Herman Ehles va¨g 2–4, S-268 31 Svalo¨v, Sweden; and §Department of Plant Biology, Uppsala Genetic Center, Swedish University of Agricultural Sciences, Box 7080, S-750 07 Uppsala, Sweden Edited by Christopher R. Somerville, Carnegie Institution of Washington, Stanford, CA, and approved March 31, 2000 (received for review February 15, 2000) Triacylglycerol (TAG) is known to be synthesized in a reaction that acid) and epoxidated fatty acid (vernolic acid) in TAG in castor uses acyl-CoA as acyl donor and diacylglycerol (DAG) as acceptor, bean (Ricinus communis) and the hawk’s-beard Crepis palaestina, and which is catalyzed by the enzyme acyl-CoA:diacylglycerol respectively. Furthermore, a similar enzyme is shown to be acyltransferase. We have found that some plants and yeast also present in the yeast Saccharomyces cerevisiae, and the gene have an acyl-CoA-independent mechanism for TAG synthesis, encoding this enzyme, YNR008w, is identified. which uses phospholipids as acyl donors and DAG as acceptor. This reaction is catalyzed by an enzyme that we call phospholipid:dia- Materials and Methods cylglycerol acyltransferase, or PDAT. PDAT was characterized in Yeast Strains and Plasmids. The wild-type yeast strains used were microsomal preparations from three different oil seeds: sunflower, either FY1679 (MAT␣ his3-⌬200 leu2-⌬1 trp1-⌬6 ura3-52) (9) or castor bean, and Crepis palaestina. -
UNITED STATES PATENT Office PREPARATION of BETA-Akoxy MONO Carboxylcacds Frederick E
Patented July 4, 1944 UNITED STATES PATENT office PREPARATION OF BETA-AKOxY MONO CARBOXYLCACDs Frederick E. King, Akron, Ohio, assignor to The B. F. Goodrich Company, New corporation of New York . York, N. Y., a No Drawing. Application August 5, 1941, Sera No. 405,512 4 Claims. (CL 260-535) This invention relates to a novel process for at least one hydrogen atom on the alpha carbon the preparation of beta-alkoxy derivatives of atom, for example, beta-lactones of saturated monocarboxylic acids, particularly beta-alkoxy aliphatic monocarboxylic acids such as beta-hy derivatives of saturated aliphatic monocarboxylic droxypropionic acid lactone, commonly known as acids such as beta-alkoxy proponic acids, and to 5 hydracrylic acid lactone, beta-hydroxy butyric the conversion of such acids into alkyl esters of acid lactone, alpha-methyl hydracrylic acid lac alpha beta unsaturated monocarboxylic acids tone, beta-hydroxy n-valeric acid actone, beta such as the alkyl esters of acrylic and meth hydroxy alpha-methyl butyric acid lactone, al acrylic acids. - - pharethyl hydracrylic acid lactone, beta-hydroxy In a copending application Serial No. 393,671, 0 isovaleric acid lactone, beta-hydroxy n-caproic filed May 15, 1941, an economical method of pre acid lactone, beta-hydroxy alpha-methyl valeric paring lactones of beta-hydroxy Carboxylic acids acid lactone, beta-methyl beta-ethyl hydracrylic from the reaction of a ketene with a carbonyl acid lactone, alpha-methyl beta-ethylhydracrylic compound such as an aldehyde or ketone has acid lactone, alpha-propyl -
2 Reactions Observed with Alkanes Do Not Occur with Aromatic Compounds 2 (SN2 Reactions Never Occur on Sp Hybridized Carbons!)
Reactions of Aromatic Compounds Aromatic compounds are stabilized by this “aromatic stabilization” energy Due to this stabilization, normal SN2 reactions observed with alkanes do not occur with aromatic compounds 2 (SN2 reactions never occur on sp hybridized carbons!) In addition, the double bonds of the aromatic group do not behave similar to alkene reactions Aromatic Substitution While aromatic compounds do not react through addition reactions seen earlier Br Br Br2 Br2 FeBr3 Br With an appropriate catalyst, benzene will react with bromine The product is a substitution, not an addition (the bromine has substituted for a hydrogen) The product is still aromatic Electrophilic Aromatic Substitution Aromatic compounds react through a unique substitution type reaction Initially an electrophile reacts with the aromatic compound to generate an arenium ion (also called sigma complex) The arenium ion has lost aromatic stabilization (one of the carbons of the ring no longer has a conjugated p orbital) Electrophilic Aromatic Substitution In a second step, the arenium ion loses a proton to regenerate the aromatic stabilization The product is thus a substitution (the electrophile has substituted for a hydrogen) and is called an Electrophilic Aromatic Substitution Energy Profile Transition states Transition states Intermediate Potential E energy H Starting material Products E Reaction Coordinate The rate-limiting step is therefore the formation of the arenium ion The properties of this arenium ion therefore control electrophilic aromatic substitutions (just like any reaction consider the stability of the intermediate formed in the rate limiting step) 1) The rate will be faster for anything that stabilizes the arenium ion 2) The regiochemistry will be controlled by the stability of the arenium ion The properties of the arenium ion will predict the outcome of electrophilic aromatic substitution chemistry Bromination To brominate an aromatic ring need to generate an electrophilic source of bromine In practice typically add a Lewis acid (e.g. -
Development of Metal-Catalyzed Reactions of Allenes with Imines and the Investigation of Brθnsted Acid Catalyzed Ene Reactions
DEVELOPMENT OF METAL-CATALYZED REACTIONS OF ALLENES WITH IMINES AND THE INVESTIGATION OF BRΘNSTED ACID CATALYZED ENE REACTIONS BY LINDSEY O. DAVIS A Dissertation Submitted to the Graduate Faculty of WAKE FOREST UNIVERSITY GRADUATE SCHOOL OF ARTS AND SCIENCES in Partial Fulfillment of the Requirements for the Degree of DOCTOR OF PHILOSOPHY in the Department of Chemistry December 2009 Winston-Salem, North Carolina Approved By: Paul B. Jones, Ph.D., Advisor ____________________________ Examining Committee: Christa L. Colyer, Ph.D., chair ____________________________ S. Bruce King, Ph. D. _______________________________ Dilip K. Kondepudi, Ph.D. _______________________________ Suzanne L. Tobey, Ph.D. _______________________________ ACKNOWLEDGMENTS I must first acknowledge my family for their support throughout my education. My mother has always encouraged me to ask questions and seek answers, which has guided my inquisitive nature as a scientist. My grandparents have taught me the importance of character and my father taught me the value in hard work. I’d also like to thank my husband for moving away from Georgia, a sacrifice I greatly appreciate. Also, his cheerful disposition helped me stay relatively positive, especially when I had bad research days. My friends also played a very important role in keeping me positive during my time at Wake. Particularly my roommates put up with me more than most. I’d like to thank Lauren Eiter for her sense of humor, Tara Weaver for her taste in books and movies, and Jenna DuMond, for her encouragement and loyalty. Also I’ve made lifetime friends with Meredith and Kavita, and even though they left me at Wake, they were always willing to offer their support. -
Organic Chemistry/Fourth Edition: E-Text
CHAPTER 17 ALDEHYDES AND KETONES: NUCLEOPHILIC ADDITION TO THE CARBONYL GROUP O X ldehydes and ketones contain an acyl group RC± bonded either to hydrogen or Ato another carbon. O O O X X X HCH RCH RCRЈ Formaldehyde Aldehyde Ketone Although the present chapter includes the usual collection of topics designed to acquaint us with a particular class of compounds, its central theme is a fundamental reaction type, nucleophilic addition to carbonyl groups. The principles of nucleophilic addition to alde- hydes and ketones developed here will be seen to have broad applicability in later chap- ters when transformations of various derivatives of carboxylic acids are discussed. 17.1 NOMENCLATURE O X The longest continuous chain that contains the ±CH group provides the base name for aldehydes. The -e ending of the corresponding alkane name is replaced by -al, and sub- stituents are specified in the usual way. It is not necessary to specify the location of O X the ±CH group in the name, since the chain must be numbered by starting with this group as C-1. The suffix -dial is added to the appropriate alkane name when the com- pound contains two aldehyde functions.* * The -e ending of an alkane name is dropped before a suffix beginning with a vowel (-al) and retained be- fore one beginning with a consonant (-dial). 654 Back Forward Main Menu TOC Study Guide TOC Student OLC MHHE Website 17.1 Nomenclature 655 CH3 O O O O CH3CCH2CH2CH CH2 CHCH2CH2CH2CH HCCHCH CH3 4,4-Dimethylpentanal 5-Hexenal 2-Phenylpropanedial When a formyl group (±CHœO) is attached to a ring, the ring name is followed by the suffix -carbaldehyde. -
Nomenclature of Carboxylic Acids • Select the Longest Carbon Chain Containing the Carboxyl Group
Chapter 5 Carboxylic Acids and Esters Carboxylic Acids • Carboxylic acids are weak organic acids which Chapter 5 contain the carboxyl group (RCO2H): Carboxylic Acids and Esters O C O H O RCOOH RCO2H Chapter Objectives: O condensed ways of • Learn to recognize the carboxylic acid, ester, and related functional groups. RCOH writing the carboxyl • Learn the IUPAC system for naming carboxylic acids and esters. group a carboxylic acid C H • Learn the important physical properties of the carboxylic acids and esters. • Learn the major chemical reaction of carboxylic acids and esters, and learn how to O predict the products of ester synthesis and hydrolysis reactions. the carboxyl group • Learn some of the important properties of condensation polymers, especially the polyesters. Mr. Kevin A. Boudreaux • The tart flavor of sour-tasting foods is often caused Angelo State University CHEM 2353 Fundamentals of Organic Chemistry by the presence of carboxylic acids. Organic and Biochemistry for Today (Seager & Slabaugh) www.angelo.edu/faculty/kboudrea 2 Nomenclature of Carboxylic Acids • Select the longest carbon chain containing the carboxyl group. The -e ending of the parent alkane name is replaced by the suffix -oic acid. • The carboxyl carbon is always numbered “1” but the number is not included in the name. • Name the substituents attached to the chain in the Nomenclature of usual way. • Aromatic carboxylic acids (i.e., with a CO2H Carboxylic Acids directly connected to a benzene ring) are named after the parent compound, benzoic acid. O C OH 3 -
Optimisation Du Métabolisme Énergétique Du Soufre Chez La Bactérie Hyperthermophile Aquifex Aeolicus
Aix-Marseille Université Ecole Doctorale des Sciences de la Vie et de la Santé Thèse de Doctorat d’Université Mention Microbiologie Clément AUSSIGNARGUES Optimisation du métabolisme énergétique du soufre chez la bactérie hyperthermophile Aquifex aeolicus Soutenue le 17 Décembre 2012 devant le jury: Pr. Frédéric BARRAS Dr. Laurent COURNAC Dr. Bruno FRANZETTI Dr. Marie-Thérèse GIUDICI-ORTICONI Dr. Anne GODFROY Dr. Marianne ILBERT Laboratoire de Bioénergétique et Ingénierie des Protéines Centre National de la Recherche Scientifique Aix-Marseille Université Ecole Doctorale des Sciences de la Vie et de la Santé Thèse de Doctorat d’Université Mention Microbiologie Clément AUSSIGNARGUES Optimisation du métabolisme énergétique du soufre chez la bactérie hyperthermophile Aquifex aeolicus Soutenue le 17 Décembre 2012 devant le jury: Pr. Frédéric BARRAS Dr. Laurent COURNAC Dr. Bruno FRANZETTI Dr. Marie-Thérèse GIUDICI-ORTICONI Dr. Anne GODFROY Dr. Marianne ILBERT Laboratoire de Bioénergétique et Ingénierie des Protéines Centre National de la Recherche Scientifique Sommaire Sommaire Introduction 2 Chapitre I- Métabolismes énergétiques du soufre 4 I) Le soufre, un élément essentiel aux multiples facettes 6 II) Le soufre utilisé comme composé énergétique 9 A) Oxydation des composés du soufre 10 1. Oxydation du sulfure d’hydrogène H2S 10 a) La Sulfure Quinone Oxydoréductase (SQR) 10 b) La flavocytochrome c sulfure déshydrogénase (FCSD) 13 2- 2. Oxydation du thiosulfate (S2O3 ) 14 a) Thiosulfate : accepteur oxydoréductase (TAOR) 14 b) Le système Sox 16 2- 3. Oxydation du sulfite (SO3 ) 20 a) Sulfite : accepteur oxydoréductase (SAOR) 21 b) Voie de l’APS 23 4. Oxydation du soufre stocké dans les globules 26 B) La réduction du soufre : soufre/polysulfure réductase 29 C) Un cas particulier : la dismutation du soufre (SOR) 33 1. -
Ketenes 25/01/2014 Part 1
Baran Group Meeting Hai Dao Ketenes 25/01/2014 Part 1. Introduction Ph Ph n H Pr3N C A brief history Cl C Ph + nPr NHCl Ph O 3 1828: Synthesis of urea = the starting point of modern organic chemistry. O 1901: Wedekind's proposal for the formation of ketene equivalent (confirmed by Staudinger 1911) Wedekind's proposal (1901) 1902: Wolff rearrangement, Wolff, L. Liebigs Ann. Chem. 1902, 325, 129. 2 Wolff adopt a ketene structure in 1912. R 2 hν R R2 1905: First synthesis and characterization of a ketene: in an efford to synthesize radical 2, 1 ROH R C Staudinger has synthesized diphenylketene 3, Staudinger, H. et al., Chem. Ber. 1905, 1735. N2 1 RO CH or Δ C R C R1 1907-8: synthesis and dicussion about structure of the parent ketene, Wilsmore, O O J. Am. Chem. Soc. 1907, 1938; Wilsmore and Stewart Chem. Ber. 1908, 1025; Staudinger and Wolff rearrangement (1902) O Klever Chem. Ber. 1908, 1516. Ph Ph Cl Zn Ph O hot Pt wire Zn Br Cl Cl CH CH2 Ph C C vs. C Br C Ph Ph HO O O O O O O O 1 3 (isolated) 2 Wilsmore's synthesis and proposal (1907-8) Staudinger's synthesis and proposal (1908) wanted to make Staudinger's discovery (1905) Latest books: ketene (Tidwell, 1995), ketene II (Tidwell, 2006), Science of Synthesis, Vol. 23 (2006); Latest review: new direactions in ketene chemistry: the land of opportunity (Tidwell et al., Eur. J. Org. Chem. 2012, 1081). Search for ketenes, Google gave 406,000 (vs. -
Synthesis of Allenes by Isomerization Reactions
3 1 Synthesis of Allenes by Isomerization Reactions A. Stephen K. Hashmi 1.1 Introduction Isomerization reactions are associated with a change in either the connectivity (the constitution) of the molecule or the steric arrangement of atoms or groups in the molecule. However, no change of the empirical formula is involved. Thus in isomer- ization reactions leading to allenes, the 1,2-diene substructure that is characteristic of this class of compounds has to be formed by one of the following reactions (Scheme 1.1): (a) Migration of a non-cumulated p-bond into cumulation with a second p-bond. The non-cumulated p-bonds can either be an alkyne (Reaction A) or a conjugat- ed or isolated diene (Reaction B). If in Reaction A the group X = H this is a pro- totropic rearrangement; another possibility would be a sigmatropic rearrange- ment in which X typically is a two- or three-atomic unsaturated moiety. These two cases are the most important isomerization reactions leading to allenes. Another priciple that would also fall into this category would be the rearrange- ment of one allene to another. (b) Transformation of a ring (a double bond equivalent) to a p-bond by a kind of intramolecular elimination process (Reaction C) or an electrocyclic ring opening (Reaction D). (c) Another option would be the addition of an intramolecular nucleophile to a con- jugated, alkyne-containing system such as a 1,3-enyne (Reaction E) or a higher cumulene (Reaction F). (d) A substitution would only fall into the category of isomerization if it is entirely intramolecular; both the attacking and the leaving group would need to remain part of the molecule.