Towards Reproducible Bioinformatics: The OpenBio-C Scientific Workflow Environemnt Alexandros Kanterakis Galateia Iatraki Konstantina Pityanou Institute of Computer Science Institute of Computer Science Dept. of Electrical and Computer Foundation for Research and Foundation for Research and Engineering, Technology–Hellas (FORTH) Technology–Hellas (FORTH) Hellenic Mediterranean University Heraklion, Crete, Greece Heraklion, Crete, Greece Heraklion, Crete, Greece
[email protected] [email protected] [email protected] Lefteris Koumakis Nikos Kanakaris Nikos Karacapilidis Institute of Computer Science Industrial Management and Information Industrial Management and Information Foundation for Research and Systems Lab, MEAD, Systems Lab, MEAD, Technology–Hellas (FORTH) University of Patras, University of Patras Heraklion, Crete, Greece Patras, Greece Patras, Greece
[email protected] [email protected] [email protected] George Potamias Institute of Computer Science Foundation for Research and Technology–Hellas (FORTH) Heraklion, Crete, Greece
[email protected] Abstract—The highly competitive environment of post- fact, these pipelines are rarely publicly available. The genomics biomedical research is pushing towards the temporal decay and eventual loss of these pipelines, in production of highly qualified results and their utilization in contrast to the almost ever-preserved and well-indexed clinical practice. Due to this pressure, an important factor of scientific papers, constitutes a major knowledge and cultural scientific progress has been underestimated namely, the loss not only for the scientific community but, for the society reproducibility of the results. To this end, it is critical to design as a whole. and implement computational platforms that enable seamless and unhindered access to distributed bio-data, software and Reproducibility or, “to publish or not to publish”.