Lotus Newsletter, 2005, Volume 35, Number 1
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A Chromosome-Scale Lotus Japonicus Gifu Genome Assembly Indicates That Symbiotic Islands Are Not General Features of Legume Genomes
bioRxiv preprint doi: https://doi.org/10.1101/2020.04.17.042473; this version posted April 18, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Title: A chromosome-scale Lotus japonicus Gifu genome assembly indicates that symbiotic islands are not general features of legume genomes Authors: Nadia Kamal1, Terry Mun2, Dugald Reid2, Jie-shun Lin2, Turgut Yigit Akyol3, Niels Sandal2, Torben Asp2, Hideki Hirakawa4, Jens Stougaard2, Klaus F. X. Mayer1,5, Shusei Sato3, and Stig Uggerhøj Andersen2 Author affiliations: 1: Helmholtz Zentrum München, German Research Center for Environmental Health, Plant Genome and Systems Biology, Ingolstädter Landstr. 1, 85764 Neuherberg, Germany. 2: Department of Molecular Biology and Genetics, Aarhus University, Gustav Wieds Vej 10, DK- 8000 Aarhus C, Denmark. 3: Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai, 980-8577, Japan 4: Kazusa DNA Research Institute, 2-1-1 Kazusa-Kamatari, Kisarazu, Chiba, 292-0816, Japan 5: Technical University Munich, Munich Germany Authors for correspondence: Klaus F. X. Mayer ([email protected]), Shusei Sato ([email protected]), and Stig U. Andersen ([email protected]) Page 1 of 37 bioRxiv preprint doi: https://doi.org/10.1101/2020.04.17.042473; this version posted April 18, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Botanical Name: LEAFY PLANT
LEAFY PLANT LIST Botanical Name: Common Name: Abelia 'Edward Goucher' Glossy Pink Abelia Abutilon palmeri Indian Mallow Acacia aneura Mulga Acacia constricta White-Thorn Acacia Acacia craspedocarpa Leatherleaf Acacia Acacia farnesiana (smallii) Sweet Acacia Acacia greggii Cat-Claw Acacia Acacia redolens Desert Carpet Acacia Acacia rigidula Blackbrush Acacia Acacia salicina Willow Acacia Acacia species Fern Acacia Acacia willardiana Palo Blanco Acacia Acalpha monostachya Raspberry Fuzzies Agastache pallidaflora Giant Pale Hyssop Ageratum corymbosum Blue Butterfly Mist Ageratum houstonianum Blue Floss Flower Ageratum species Blue Ageratum Aloysia gratissima Bee Bush Aloysia wrightii Wright's Bee Bush Ambrosia deltoidea Bursage Anemopsis californica Yerba Mansa Anisacanthus quadrifidus Flame Bush Anisacanthus thurberi Desert Honeysuckle Antiginon leptopus Queen's Wreath Vine Aquilegia chrysantha Golden Colmbine Aristida purpurea Purple Three Awn Grass Artemisia filifolia Sand Sage Artemisia frigida Fringed Sage Artemisia X 'Powis Castle' Powis Castle Wormwood Asclepias angustifolia Arizona Milkweed Asclepias curassavica Blood Flower Asclepias curassavica X 'Sunshine' Yellow Bloodflower Asclepias linearis Pineleaf Milkweed Asclepias subulata Desert Milkweed Asclepias tuberosa Butterfly Weed Atriplex canescens Four Wing Saltbush Atriplex lentiformis Quailbush Baileya multiradiata Desert Marigold Bauhinia lunarioides Orchid Tree Berlandiera lyrata Chocolate Flower Bignonia capreolata Crossvine Bougainvillea Sp. Bougainvillea Bouteloua gracilis -
Two Cryptic Species of Lotus (Fabaceae) from the Iberian Peninsula 21-45 Wulfenia 27 (2020): 21– 45 Mitteilungen Des Kärntner Botanikzentrums Klagenfurt
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Wulfenia Jahr/Year: 2020 Band/Volume: 27 Autor(en)/Author(s): Kramina Tatiana E., Samigullin Tahir H., Meschersky Ilya G. Artikel/Article: Two cryptic species of Lotus (Fabaceae) from the Iberian Peninsula 21-45 Wulfenia 27 (2020): 21– 45 Mitteilungen des Kärntner Botanikzentrums Klagenfurt Two cryptic species of Lotus (Fabaceae) from the Iberian Peninsula Tatiana E. Kramina, Tahir H. Samigullin & Ilya G. Meschersky Summary: The problem of cryptic species is well known in taxonomy of different groups of organisms, including plants, and their recognition can contribute to the assessment of global biodiversity and the development of conservation methods. Analyses of Lotus glareosus and related taxa from the Iberian Peninsula based on various types of data (i.e. sequences of nuclear ribosomal ITS-1-2, 5’ETS and cpDNA trnL-F, seven loci of nuclear microsatellites) revealed that the material earlier determined as ‘L. glareosus’ is subdivided into two genetically distant groups: L. carpetanus, related to L. conimbricensis, and L. glareosus, included in the L. corniculatus complex. Though only slight morphological distinctions were found between them, significant genetic differences comparable to those between sections of the genus Lotus (p-distance 0.07– 0.08 in ITS, 0.060 – 0.067 in ETS and 0.010 – 0.013 in trnL-F; substitution number 43 – 47 bp in ITS, 22–24 bp in ETS and 12–14 bp in trnL-F) and no evidence of genetic exchange suggest that these groups may represent two deeply diverged lineages that should be treated as two separate species. -
Phylogeny of the Genus Lotus (Leguminosae, Loteae): Evidence from Nrits Sequences and Morphology
813 Phylogeny of the genus Lotus (Leguminosae, Loteae): evidence from nrITS sequences and morphology G.V. Degtjareva, T.E. Kramina, D.D. Sokoloff, T.H. Samigullin, C.M. Valiejo-Roman, and A.S. Antonov Abstract: Lotus (120–130 species) is the largest genus of the tribe Loteae. The taxonomy of Lotus is complicated, and a comprehensive taxonomic revision of the genus is needed. We have conducted phylogenetic analyses of Lotus based on nrITS data alone and combined with data on 46 morphological characters. Eighty-one ingroup nrITS accessions represent- ing 71 Lotus species are studied; among them 47 accessions representing 40 species are new. Representatives of all other genera of the tribe Loteae are included in the outgroup (for three genera, nrITS sequences are published for the first time). Forty-two of 71 ingroup species were not included in previous morphological phylogenetic studies. The most important conclusions of the present study are (1) addition of morphological data to the nrITS matrix produces a better resolved phy- logeny of Lotus; (2) previous findings that Dorycnium and Tetragonolobus cannot be separated from Lotus at the generic level are well supported; (3) Lotus creticus should be placed in section Pedrosia rather than in section Lotea; (4) a broad treatment of section Ononidium is unnatural and the section should possibly not be recognized at all; (5) section Heineke- nia is paraphyletic; (6) section Lotus should include Lotus conimbricensis; then the section is monophyletic; (7) a basic chromosome number of x = 6 is an important synapomorphy for the expanded section Lotus; (8) the segregation of Lotus schimperi and allies into section Chamaelotus is well supported; (9) there is an apparent functional correlation be- tween stylodium and keel evolution in Lotus. -
Tmcm1de1.Pdf
Departament de Biologia Facultat de Ciències Hybridization patterns in Balearic endemic plants assessed by molecular and morphological markers — Ph. D. Thesis — Miquel Àngel Conesa Muñoz Supervisors: Dr. Maurici Mus Amézquita (Universitat de les Illes Balears) Dr. Josep Antoni Rosselló Picornell (Universitat de València) May 2010 Palma de Mallorca El doctor Maurici Mus Amézquita, professor titular de la Universitat de les Illes Balears, i el doctor Josep Antoni Rosselló Picornell, professor titular de la Universitat de València, CERTIFIQUEN: Que D. Miquel Àngel Conesa Muñoz ha realitzat, baix la seva direcció en el Laboratori de Botànica de la Universitat de les Illes Balears i en el Departament de Botànica del Jardí Botànic de la Universitat de València, el treball per optar al grau de Doctor en Biologia de les Plantes en Condicions Mediterrànies, amb el títol: “HYBRIDIZATION PATTERNS IN BALEARIC ENDEMIC PLANTS ASSESSED BY MOLECULAR AND MORPHOLOGICAL MARKERS” Considerant finalitzada la present memòria, autoritzem la seva presentació amb la finalitat de ser jutjada pel tribunal corresponent. I per tal que així consti, signem el present certificat a Palma de Mallorca, a 27 de maig de 2010. Dr. Maurici Mus Dr. Josep A. Rosselló 1 2 A la meva família, als meus pares. 3 4 Agraïments - Acknowledgements En la vida tot arriba. A moments semblava que no seria així, però aquesta tesi també s’ha acabat. Per arribar avui a escriure aquestes línies, moltes persones han patit amb mi, per mi, o m’han aportat el seu coneixement i part del seu temps. Així doncs, merescut és que els recordi aquí. Segurament deixaré algú, que recordaré quan ja sigui massa tard per incloure’l. -
Flora Mediterranea 26
FLORA MEDITERRANEA 26 Published under the auspices of OPTIMA by the Herbarium Mediterraneum Panormitanum Palermo – 2016 FLORA MEDITERRANEA Edited on behalf of the International Foundation pro Herbario Mediterraneo by Francesco M. Raimondo, Werner Greuter & Gianniantonio Domina Editorial board G. Domina (Palermo), F. Garbari (Pisa), W. Greuter (Berlin), S. L. Jury (Reading), G. Kamari (Patras), P. Mazzola (Palermo), S. Pignatti (Roma), F. M. Raimondo (Palermo), C. Salmeri (Palermo), B. Valdés (Sevilla), G. Venturella (Palermo). Advisory Committee P. V. Arrigoni (Firenze) P. Küpfer (Neuchatel) H. M. Burdet (Genève) J. Mathez (Montpellier) A. Carapezza (Palermo) G. Moggi (Firenze) C. D. K. Cook (Zurich) E. Nardi (Firenze) R. Courtecuisse (Lille) P. L. Nimis (Trieste) V. Demoulin (Liège) D. Phitos (Patras) F. Ehrendorfer (Wien) L. Poldini (Trieste) M. Erben (Munchen) R. M. Ros Espín (Murcia) G. Giaccone (Catania) A. Strid (Copenhagen) V. H. Heywood (Reading) B. Zimmer (Berlin) Editorial Office Editorial assistance: A. M. Mannino Editorial secretariat: V. Spadaro & P. Campisi Layout & Tecnical editing: E. Di Gristina & F. La Sorte Design: V. Magro & L. C. Raimondo Redazione di "Flora Mediterranea" Herbarium Mediterraneum Panormitanum, Università di Palermo Via Lincoln, 2 I-90133 Palermo, Italy [email protected] Printed by Luxograph s.r.l., Piazza Bartolomeo da Messina, 2/E - Palermo Registration at Tribunale di Palermo, no. 27 of 12 July 1991 ISSN: 1120-4052 printed, 2240-4538 online DOI: 10.7320/FlMedit26.001 Copyright © by International Foundation pro Herbario Mediterraneo, Palermo Contents V. Hugonnot & L. Chavoutier: A modern record of one of the rarest European mosses, Ptychomitrium incurvum (Ptychomitriaceae), in Eastern Pyrenees, France . 5 P. Chène, M. -
Molecular Characterization of Carbonic Anhydrase Genes in Lotus Japonicus and Their Potential Roles in Symbiotic Nitrogen Fixation
International Journal of Molecular Sciences Article Molecular Characterization of Carbonic Anhydrase Genes in Lotus japonicus and Their Potential Roles in Symbiotic Nitrogen Fixation Longlong Wang * , Jianjun Liang, Yu Zhou, Tao Tian, Baoli Zhang and Deqiang Duanmu * State Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; [email protected] (J.L.); [email protected] (Y.Z.); [email protected] (T.T.); [email protected] (B.Z.) * Correspondence: [email protected] (L.W.); [email protected] (D.D.) Abstract: Carbonic anhydrase (CA) plays a vital role in photosynthetic tissues of higher plants, whereas its non-photosynthetic role in the symbiotic root nodule was rarely characterized. In this study, 13 CA genes were identified in the model legume Lotus japonicus by comparison with Ara- bidopsis CA genes. Using qPCR and promoter-reporter fusion methods, three previously identified nodule-enhanced CA genes (LjaCA2, LjaCA6, and LjbCA1) have been further characterized, which exhibit different spatiotemporal expression patterns during nodule development. LjaCA2 was ex- pressed in the central infection zone of the mature nodule, including both infected and uninfected cells. LjaCA6 was restricted to the vascular bundle of the root and nodule. As for LjbCA1, it was expressed in most cell types of nodule primordia but only in peripheral cortical cells and uninfected Citation: Wang, L.; Liang, J.; Zhou, cells of the mature nodule. Using CRISPR/Cas9 technology, the knockout of LjbCA1 or both LjaCA2 Y.; Tian, T.; Zhang, B.; Duanmu, D. and its homolog, LjaCA1, did not result in abnormal symbiotic phenotype compared with the wild- Molecular Characterization of type plants, suggesting that LjβCA1 or LjαCA1/2 are not essential for the nitrogen fixation under Carbonic Anhydrase Genes in Lotus normal symbiotic conditions. -
Review: Medicago Truncatula As a Model for Understanding Plant Interactions with Other Organisms, Plant Development and Stress Biology: Past, Present and Future
CSIRO PUBLISHING www.publish.csiro.au/journals/fpb Functional Plant Biology, 2008, 35, 253-- 264 Review: Medicago truncatula as a model for understanding plant interactions with other organisms, plant development and stress biology: past, present and future Ray J. Rose Australian Research Council Centre of Excellence for Integrative Legume Research, School of Environmental and Life Sciences, The University of Newcastle, Callaghan, NSW 2308, Australia. Email: [email protected] Abstract. Medicago truncatula Gaertn. cv. Jemalong, a pasture species used in Australian agriculture, was first proposed as a model legumein 1990.Sincethat time M. truncatula,along withLotus japonicus(Regal) Larsen, hascontributed tomajor advances in understanding rhizobia Nod factor perception and the signalling pathway involved in nodule formation. Research using M. truncatula as a model has expanded beyond nodulation and the allied mycorrhizal research to investigate interactions with insect pests, plant pathogens and nematodes. In addition to biotic stresses the genetic mechanisms to ameliorate abiotic stresses such as salinity and drought are being investigated. Furthermore, M. truncatula is being used to increase understanding of plant development and cellular differentiation, with nodule differentiation providing a different perspective to organogenesis and meristem biology. This legume plant represents one of the major evolutionary success stories of plant adaptation to its environment, and it is particularly in understanding the capacity to integrate biotic and abiotic plant responses with plant growth and development that M. truncatula has an important role to play. The expanding genomic and genetic toolkit available with M. truncatula provides many opportunities for integrative biological research with a plant which is both a model for functional genomics and important in agricultural sustainability. -
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Açores Açores Página 166 Azorina vidalii (H. C. Watson) Feer 168 Calacalles droueti (Crotch, 1867) 170 Calathus lundbladi Colas, 1938 172 Cheilolejeunea cedercreutzii (H. Buch et Perss.) Grolle 174 Cixius cavazoricus Hoch, 1991 176 Corema album (L.) D. Don ssp. azoricum P. Silva 178 Euphorbia stygiana H. C. Watson ssp. santamariae H. Schaefer 180 Gietella faialensis Menier & Constantin, 1988 182 Juniperus brevifolia (Seub.) Antoine 162 184 Laurus azorica (Seub.) Franco 186 Macarorchiestia martini Stock, 1989 188 Marsilea azorica Laun. & Paiva 190 Megabalanus azoricus (Pilsbry, 1916) 192 Pericallis malvifolia (L’Hér.) B. Nord. ssp. caldeirae H. Schaefer 194 Prunus azorica (Hort. Ex Mouil.) Rivas Mart., Lousa Fer. Prieto, E. Dias, J. C. Costa, C. Aguiar 196 Pseudoblothrus oromii Mahnert, 1990 198 Pyrrhula murina Godman, 1866 200 Silene uniflora Roth ssp. cratericola (Franco) Franco 202 Thalassophilus azoricus Oromí & Borges, 1991 204 Trechus isabelae Borges, Serrano & Oromí, 2005 206 Trechus jorgensis Oromí & Borges, 1991 208 Trechus oromii Borges, Serrano & Amorim, 2004 210 Turinyphia cavernicola Wunderlich, 2005 Madeira Madeira Página 212 Aichryson dumosum (Lowe) Praeger 214 Argranthemum thalassophilum (Svent.) Humphries 216 Asparagus nesiotes Svent. subsp. nesiotes 218 Beta patula Aiton 220 Chrysolina fragariae Wollaston, 1854 222 Columba trocaz (Heineken, 1829) 224 Euphorbia anachoreta Svent. 226 Geomitra turricula (Lowe, 1831) 228 Geranium maderense Yeo 230 Gonepteryx maderensis Felder, 1862 232 Goodyera macrophylla Lowe 163 234 Hymenophyllum maderense Gibby & Lovis 236 Idiomela subplicata (Sowerby, 1824) 238 Jasminum azoricum L. 240 Juniperus cedrus Webb & Berthel. subsp. maderensis (Menezes) Rivas Mart., Capelo, J. C. Costa, Lousã, Fontinha, Jardim & Sequeira 242 Monachus monachus (Hermann, 1779) 244 Monanthes lowei (A. -
Small Space Vegetable Flower Container Gardening.Pub
CORNELL COOPERATIVE EXTENSION OF ONEIDA COUNTY 121 Second Street Oriskany, NY 13424-9799 (315) 736-3394 or (315) 337-2531 FAX: (315) 736-2580 An unadorned patio, deck, or balcony is a tantalizing invitation to garden in containers. Each summer, visitors to Cornell Plantations marvel at the colorful spectacle of container plant- ings assembled around the Lewis Education Center. The bold, sometimes flamboyant flowers and foliage evoke a sense of the tropics and mirror our warm summers. Container garden- ing is gaining popularity for small spaces, and as a way to ac- cent existing gardens. Selecting a container Virtually anything that will hold water is a candidate for con- tainer growing. From a bag of soil with holes punched for planting and drainage to wooden tubs, old riding boots, milk cans, hanging baskets and fancy ornamental pots. You can choose the size, shape and cost to fit your needs and desires. The deeper the pot the less watering it will need. Pots with a small soil volume will dry out faster and require more frequent watering. Unlike plants in the ground, plants in pots or hang- ing baskets in the yard, on the deck or on the windowsill are exposed on all sides to the drying effects of wind and sun. On hot, windy days you may have to water them more than once. Darker colored containers will absorb more heat, which can get seeds and transplants off to a faster start, but these con- tainers will need more watering if they are in direct sunlight. Lighter colored containers may be better for most gardeners. -
Lotus Japonicus Related Species and Their Agronomic Importance
A.J. Márquez (Editorial Director). 2005. Lotus japonicus Handbook. pp. 25-37. http://www.springer.com/life+sci/plant+sciences/book/978-1-4020-3734-4 Chapter 1.2 LOTUS-RELATED SPECIES AND THEIR AGRONOMIC IMPORTANCE Pedro Díaz*, Omar Borsani, and Jorge Monza Laboratorio de Bioquímica; Departamento de Biología Vegetal; Facultad de * Agronomía; CP12900 Montevideo; URUGUAY; Corresponding author. Email: [email protected] Phone: +598 23 54 0229 Fax: +598 23 59 0436 Keywords: L. corniculatus, L. uliginosus , L. glaber, L. subbiflorus, botanical features, pastures, environmental adaptation, plant breeding. More than 180 species within the genus Lotus occur worldwide. Four have been domesticated and improved through selection and plant breeding: Lotus corniculatus, L. uliginosus, L. glaber and L. subbiflorus. Since the model legume L. japonicus is related taxonomically to these species, knowledge can be transferred to the agronomical arena. The slow progress observed in Lotus cultivar improvements to date could be explained by the polyploid nature of some of these species, a feature not present in L. japonicus. This chapter reviews briefly the taxonomical relationships among these species. Secondly, it illustrates how Lotus species are currently used to improve pastures for which other forage legume species are not suitable. Finally, it touches on beneficial microorganism-plant interactions and the benefits of using Lotus species as animal fodder. INTRODUCTION One of the principal protein sources of the human diet comes from animal origin. Beef and sheep meat production is based on natural, cultivated pastures and feedlot system with nutrient supplement. Cultivated pastures can be composed of a single cultivated species or a mixture of forage species. -
An Integrated Information Portal for the Model Legume Lotus Japonicus Received: 12 July 2016 Terry Mun1, Asger Bachmann1,2, Vikas Gupta1,2, Jens Stougaard1 & Stig U
www.nature.com/scientificreports OPEN Lotus Base: An integrated information portal for the model legume Lotus japonicus Received: 12 July 2016 Terry Mun1, Asger Bachmann1,2, Vikas Gupta1,2, Jens Stougaard1 & Stig U. Andersen1 Accepted: 22 November 2016 Lotus japonicus is a well-characterized model legume widely used in the study of plant-microbe Published: 23 December 2016 interactions. However, datasets from various Lotus studies are poorly integrated and lack interoperability. We recognize the need for a comprehensive repository that allows comprehensive and dynamic exploration of Lotus genomic and transcriptomic data. Equally important are user-friendly in- browser tools designed for data visualization and interpretation. Here, we present Lotus Base, which opens to the research community a large, established LORE1 insertion mutant population containing an excess of 120,000 lines, and serves the end-user tightly integrated data from Lotus, such as the reference genome, annotated proteins, and expression profiling data. We report the integration of expression data from the L. japonicus gene expression atlas project, and the development of tools to cluster and export such data, allowing users to construct, visualize, and annotate co-expression gene networks. Lotus Base takes advantage of modern advances in browser technology to deliver powerful data interpretation for biologists. Its modular construction and publicly available application programming interface enable developers to tap into the wealth of integrated Lotus data. Lotus Base is freely accessible at: https://lotus.au.dk. Lotus japonicus is a popular, well-characterized model legume1, widely used to study plant-microbe interactions due to its ability to establish a range of different types of relationship with microorganisms along the symbio- sis–pathogenesis spectrum—ranging from biological nitrogen fixation2 and arbuscular mycorrhizal symbiosis3, to bacterial4 and fungal5 pathogenesis.