The Geochemistry of Modern Calcareous Barnacle Shells and Applications for Palaeoenvironmental Studies
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The Lower Bathyal and Abyssal Seafloor Fauna of Eastern Australia T
O’Hara et al. Marine Biodiversity Records (2020) 13:11 https://doi.org/10.1186/s41200-020-00194-1 RESEARCH Open Access The lower bathyal and abyssal seafloor fauna of eastern Australia T. D. O’Hara1* , A. Williams2, S. T. Ahyong3, P. Alderslade2, T. Alvestad4, D. Bray1, I. Burghardt3, N. Budaeva4, F. Criscione3, A. L. Crowther5, M. Ekins6, M. Eléaume7, C. A. Farrelly1, J. K. Finn1, M. N. Georgieva8, A. Graham9, M. Gomon1, K. Gowlett-Holmes2, L. M. Gunton3, A. Hallan3, A. M. Hosie10, P. Hutchings3,11, H. Kise12, F. Köhler3, J. A. Konsgrud4, E. Kupriyanova3,11,C.C.Lu1, M. Mackenzie1, C. Mah13, H. MacIntosh1, K. L. Merrin1, A. Miskelly3, M. L. Mitchell1, K. Moore14, A. Murray3,P.M.O’Loughlin1, H. Paxton3,11, J. J. Pogonoski9, D. Staples1, J. E. Watson1, R. S. Wilson1, J. Zhang3,15 and N. J. Bax2,16 Abstract Background: Our knowledge of the benthic fauna at lower bathyal to abyssal (LBA, > 2000 m) depths off Eastern Australia was very limited with only a few samples having been collected from these habitats over the last 150 years. In May–June 2017, the IN2017_V03 expedition of the RV Investigator sampled LBA benthic communities along the lower slope and abyss of Australia’s eastern margin from off mid-Tasmania (42°S) to the Coral Sea (23°S), with particular emphasis on describing and analysing patterns of biodiversity that occur within a newly declared network of offshore marine parks. Methods: The study design was to deploy a 4 m (metal) beam trawl and Brenke sled to collect samples on soft sediment substrata at the target seafloor depths of 2500 and 4000 m at every 1.5 degrees of latitude along the western boundary of the Tasman Sea from 42° to 23°S, traversing seven Australian Marine Parks. -
Otago Submarine Canyons: Mapping and Macrobenthos
Otago Submarine Canyons: Mapping and Macrobenthos Bryce A. Peebles A thesis submitted in partial fulfilment for the degree of Master of Science at the University of Otago December 2013 ii Abstract Submarine canyons are steep-sided “V’ or “U” shaped valleys that incise continental slopes worldwide. The geophysical and oceanographic features of submarine canyons can produce environmental conditions that cause benthic assemblages to be distinctive and productive compared to those of the adjacent slope; however the assemblages are potentially vulnerable to anthropogenic impacts, including bottom fishing. In order to help inform policy and management, submarine canyons need to be objectively defined topographically and their benthic assemblages characterised. A canyon network occurs off the Otago Peninsula, south-eastern New Zealand, but lack of detailed bathymetric data and adequate benthic sampling has limited study of the canyons. This thesis outlines a method of defining submarine canyon areas and examines epifaunal and infaunal assemblages of the Otago canyons and adjacent slope. Objective definition of the Otago canyon network in the GIS software GRASS along with the steps to use this methodology worldwide are described. Archival count data from 1966-74 on the epifauna are analysed using the PRIMER suite of programs to characterise epifaunal assemblages. Anomurans, polychaetes, asteroids and ascidians make up 70% of the epifaunal canyon assemblage. The epifaunal assemblage is clearly defined by water depth and recognisable from 380 m. Quantitative sampling of infauna in Saunders canyon, Papanui canyon and adjacent slope was carried out to examine infaunal community structure of the canyons and adjacent slope. Infaunal canyon assemblages are dominated by polychaetes, amphipods, ophiuroids, decapods and isopods in canyons, accounting for 75% of collected individuals. -
Zootaxa, Pollicipes Caboverdensis Sp. Nov. (Crustacea: Cirripedia
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Portal do Conhecimento Zootaxa 2557: 29–38 (2010) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2010 · Magnolia Press ISSN 1175-5334 (online edition) Pollicipes caboverdensis sp. nov. (Crustacea: Cirripedia: Scalpelliformes), an intertidal barnacle from the Cape Verde Islands JOANA N. FERNANDES1, 2, 3, TERESA CRUZ1, 2 & ROBERT VAN SYOC4 1Laboratório de Ciências do Mar, Universidade de Évora, Apartado 190, 7520-903 Sines, Portugal 2Centro de Oceanografia, Faculdade de Ciências da Universidade de Lisboa, Campo Grande, 1749-016 Lisboa, Portugal 3Section of Evolution and Ecology, University of California, Davis, CA 95616, USA 4Department of Invertebrate Zoology and Geology, California Academy of Sciences, 55 Music Concourse Dr, San Francisco, CA 94118-4599, USA Abstract Recently, genetic evidence supported the existence of a new species of the genus Pollicipes from the Cape Verde Islands, previously considered a population of P. pollicipes. However, P. pollicipes was not sampled at its southern limit of distribution (Dakar, Senegal), which is geographically separated from the Cape Verde Islands by about 500 km. Herein we describe Pollicipes caboverdensis sp. nov. from the Cape Verde Islands and compare its morphology with the other three species of Pollicipes: P. pollicipes, P. elegans and P. po l y me ru s . Pollicipes pollicipes was sampled at both the middle (Portugal) and southern limit (Dakar, Senegal) of its geographical distribution. The genetic divergence among and within these two regions and Cape Verde was calculated through the analysis of partial mtDNA CO1 gene sequences. -
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans by Robert George Young A Thesis presented to The University of Guelph In partial fulfilment of requirements for the degree of Doctor of Philosophy in Integrative Biology Guelph, Ontario, Canada © Robert George Young, March, 2016 ABSTRACT MOLECULAR SPECIES DELIMITATION AND BIOGEOGRAPHY OF CANADIAN MARINE PLANKTONIC CRUSTACEANS Robert George Young Advisors: University of Guelph, 2016 Dr. Sarah Adamowicz Dr. Cathryn Abbott Zooplankton are a major component of the marine environment in both diversity and biomass and are a crucial source of nutrients for organisms at higher trophic levels. Unfortunately, marine zooplankton biodiversity is not well known because of difficult morphological identifications and lack of taxonomic experts for many groups. In addition, the large taxonomic diversity present in plankton and low sampling coverage pose challenges in obtaining a better understanding of true zooplankton diversity. Molecular identification tools, like DNA barcoding, have been successfully used to identify marine planktonic specimens to a species. However, the behaviour of methods for specimen identification and species delimitation remain untested for taxonomically diverse and widely-distributed marine zooplanktonic groups. Using Canadian marine planktonic crustacean collections, I generated a multi-gene data set including COI-5P and 18S-V4 molecular markers of morphologically-identified Copepoda and Thecostraca (Multicrustacea: Hexanauplia) species. I used this data set to assess generalities in the genetic divergence patterns and to determine if a barcode gap exists separating interspecific and intraspecific molecular divergences, which can reliably delimit specimens into species. I then used this information to evaluate the North Pacific, Arctic, and North Atlantic biogeography of marine Calanoida (Hexanauplia: Copepoda) plankton. -
Stalked Barnacles
*Manuscript Click here to view linked References Stalked barnacles (Cirripedia, Thoracica) from the Upper Jurassic (Tithonian) Kimmeridge Clay of Dorset, UK; palaeoecology and bearing on the evolution of living forms Andy Gale School of Earth and Environmental Sciences, University of Portsmouth, Burnaby Building, Burnaby Road, Portsmouth PO1 3QL; E-mail address: [email protected] A B S T R A C T New thoracican cirripede material from the Kimmeridge Clay (Upper Jurassic, Tithonian) is described. This includes a log, encrusted on the lower surface with hundreds of perfectly preserved, articulated specimens of Etcheslepas durotrigensis Gale, 2014, and fewer specimens of Concinnalepas costata (Withers, 1928). Some individuals are preserved in life position, hanging from the underside of the wood, and the material provides new morphological information on both species. It appears that Martillepas ovalis (Withers, 1928), which occurs at the same level (Freshwater Steps Stone Band, pectinatus Zone) attached preferentially to ammonites, whereas E. durotrigensis and C. costata used wood as a substrate for their epiplanktonic lifestyle. Two regurgitates containing abundant barnacle valves, mostly broken, and some bivalve fragments, have been found in the Kimmeridge Clay. These were produced by a fish grazing on epiplanktonic species, and are only the second example of regurgitates containing barnacle valves known from the fossil record. The evolution of modern barnacle groups is discussed in the light of the new Jurassic material as well as recently published molecular phylogenies. New clades defined herein are called the Phosphatothoracica, the Calamida and the Unilatera. Keywords Epiplanktonic barnacles Kimmeridge Clay predation 1. INTRODUCTION Amongst the most remarkable fossils collected by Steve Etches from the Kimmeridge Clay of Dorset are articulated stalked barnacles. -
Unprecedented Genomic Diversity of RNA Viruses In
RESEARCH ARTICLE elifesciences.org Unprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA viruses Ci-Xiu Li1,2†, Mang Shi1,2,3†, Jun-Hua Tian4†, Xian-Dan Lin5†, Yan-Jun Kang1,2†, Liang-Jun Chen1,2, Xin-Cheng Qin1,2, Jianguo Xu1,2, Edward C Holmes1,3, Yong-Zhen Zhang1,2* 1State Key Laboratory for Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China; 2Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Hangzhou, China; 3Marie Bashir Institute for Infectious Diseases and Biosecurity, Charles Perkins Centre, School of Biological Sciences and Sydney Medical School, The University of Sydney, Sydney, Australia; 4Wuhan Center for Disease Control and Prevention, Wuhan, China; 5Wenzhou Center for Disease Control and Prevention, Wenzhou, China Abstract Although arthropods are important viral vectors, the biodiversity of arthropod viruses, as well as the role that arthropods have played in viral origins and evolution, is unclear. Through RNA sequencing of 70 arthropod species we discovered 112 novel viruses that appear to be ancestral to much of the documented genetic diversity of negative-sense RNA viruses, a number of which are also present as endogenous genomic copies. With this greatly enriched diversity we revealed that arthropods contain viruses that fall basal to major virus groups, including the vertebrate-specific *For correspondence: arenaviruses, filoviruses, hantaviruses, influenza viruses, lyssaviruses, and paramyxoviruses. We [email protected] similarly documented a remarkable diversity of genome structures in arthropod viruses, including †These authors contributed a putative circular form, that sheds new light on the evolution of genome organization. -
The Cirripedia of New Caledonia
The Cirripedia of New Caledonia Diana S. lONES Western Australian MlISeum [email protected] The Indo-Pacific deep-sea benthos was investigated by major expeditions such as those of «Challenger» (1873-1876), «Investigator» (1884-] 887), «Valdiva» (1898-] 899), «Siboga» (1899 1900), «Albatross» (1907-1910) and «Galathea» (1950-52). However, none of these expeditions col lected in the waters of New Caledonia and its surrounding areas. The cirripede fauna of the region was first documented through the brief report of Fischer (1884), who described the shallow water bar nacles of New Caledonia. Fischer briefly listed 15 species from specimens deposited in the Musee de Bordeaux by the missionaries Montrouzier and Lambert. From that time, there was no documenta tion of the fauna until the latter half of the 20th century, when a rigorous collection and taxonomic program was conducted in the region supported through IRD (ORSTOM) and the Museum national d'Histoire naturelle, Paris. Since 1978, numerous barnacle specimens have been collected in the deep waters off Vanuatu (MUSORSTOM 8 1994), New Caledonia, the Chesterfield and Loyalty Islands (BIOCAL 1985, MUSORSTOM 41985, LAGON 1985, MUSORSTOM 5 1986.CHALCAL2 1986, SMIB21986.SMIB31987.CORAIL2 1988,MUSORSTOM61989.VAUBAN 1989,ALIS 1989, SMIB61990,BERYX21992,BATHUS21993,SMIB81993,HALIPR0219(6),the Wall ace and Futuna Islands, Combe. Field. Tuscarora and Waterwich Banks (MUSORSTOM 7 1(92). the Norfolk Ridge (SMIB 4 1989, SMIB 5 1989. BATHUS 3 1993, BATHUS 4 19(4) and the Matthew and Hunter Islands (VOLSMAR 1989). Examination of these collections has yielded an exceptional diversity of thoracican cirripedes. Buckeridge (1994, 1997) provided a comprehensive account of the deep-sea Verrucomorpha (Cirripedia) from collections made by several French cruises in the New Caledonian area and the Wallis and Futuna Islands. -
The Crustacean-Inspired Pokémon
Journal of Geek Studies jgeekstudies.org Pokécrustacea: the crustacean-inspired Pokémon Rafael M. Rosa, Daniel C. Cavallari & Ana L. Vera-Silva Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto, Universidade de São Paulo. Ri- beirão Preto, SP, Brazil. E-mail: [email protected]; [email protected]; [email protected] Crustaceans are a large and incredi- spectable few meters of leg span (e.g., the bly diverse group of very familiar animals Japanese spider crab can reach a whopping such as crabs, lobsters, shrimps, woodlice, 3.8 m or 12.5 ft). They are quite an ancient barnacles, and their allies. As full-fledged group, ranging back to the Cambrian pe- arthropods (invertebrate animals with an riod some 511 million years ago. Some ex- exoskeleton, a segmented body, and paired isting animals are virtually identical to fos- jointed appendages), they comprise over silized forms from the Triassic, dating back 70,000 species (Brusca et al., 2016) ranging 200 million years ago. in size from a fraction of a millimeter to re- Left: Decapods, from German zoologist Ernst Haeckel’s 1904 work “Kunstformen der Natur”. Right: Pokémon inspired by real-world decapods. 97 Rosa et al. Despite being classically identified as a group of their own, recent studies have shown that Crustacea is actually a para- phyletic taxon (that is, a group of animals that doesn’t include all descendants of their common ancestor) and that some crusta- ceans are more closely related to Hexapoda (insects and their allies) than to other crus- taceans (Regier et al., 2010; Lozano-Fernan- dez et al., 2019). -
Aquaculture of Stalked Barnacles (Pollicipes Pollicipes)
Aquaculture of stalked barnacles (Pollicipes pollicipes) Sofia Cota Franco A thesis submitted to Newcastle University in candidature for the Degree of Doctor of Philosophy School of Marine Science and Technology July 2014 Abstract The stalked barnacle, Pollicipes pollicipes, is considered a delicacy on the Iberian Peninsula and has a high market value. Despite being a dangerous activity, increased collection efforts and associated stock shortage have raised awareness of the need for effective conservation and stock management policies. Accordingly, aquaculture has received interest as an alternative to supply the market and for re-stocking programmes. However, knowledge on the aquaculture requirement of this species and applicable production cycles is limited. Research challenges span the entire P. pollicipes life cycle, from adult reproduction to larval settlement. Though adults have been kept in culture, the conditions required for broodstock reproduction and larval release remain poorly studied and larvae have been routinely extracted from wild-collected adults and reared to cyprids. Optimization of larval culture is essential for the production of high-quality larvae and avoidance of high mortality. Furthermore, cyprid settlement on artificial substrata presents a bottleneck to production, with settlement occurring mostly on conspecific adults. The conditions that mediate settlement on preferential substrata have yet to be established. Though juvenile behaviour and growth in the wild have been the subject of ecological studies, research on culture conditions is limited and the influence of environmental factors is poorly understood. In the present work, the effect of environmental conditions on the behaviour and development of P. pollicipes was tested throughout the life cycle to identify optimal culture conditions and assess potential for larger-scale culture. -
A Taxonomic Catalogue of Japanese Nemerteans (Phylum Nemertea)
Title A Taxonomic Catalogue of Japanese Nemerteans (Phylum Nemertea) Author(s) Kajihara, Hiroshi Zoological Science, 24(4), 287-326 Citation https://doi.org/10.2108/zsj.24.287 Issue Date 2007-04 Doc URL http://hdl.handle.net/2115/39621 Rights (c) Zoological Society of Japan / 本文献の公開は著者の意思に基づくものである Type article Note REVIEW File Information zsj24p287.pdf Instructions for use Hokkaido University Collection of Scholarly and Academic Papers : HUSCAP ZOOLOGICAL SCIENCE 24: 287–326 (2007) © 2007 Zoological Society of Japan [REVIEW] A Taxonomic Catalogue of Japanese Nemerteans (Phylum Nemertea) Hiroshi Kajihara* Department of Natural History Sciences, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan A literature-based taxonomic catalogue of the nemertean species (Phylum Nemertea) reported from Japanese waters is provided, listing 19 families, 45 genera, and 120 species as valid. Applications of the following species names to forms previously recorded from Japanese waters are regarded as uncertain: Amphiporus cervicalis, Amphiporus depressus, Amphiporus lactifloreus, Cephalothrix filiformis, Cephalothrix linearis, Cerebratulus fuscus, Lineus vegetus, Lineus bilineatus, Lineus gesserensis, Lineus grubei, Lineus longifissus, Lineus mcintoshii, Nipponnemertes pulchra, Oerstedia venusta, Prostoma graecense, and Prostoma grande. The identities of the taxa referred to by the fol- lowing four nominal species require clarification through future investigations: Cosmocephala japonica, Dicelis rubra, Dichilus obscurus, and Nareda serpentina. The nominal species established from Japanese waters are tabulated. In addition, a brief history of taxonomic research on Japanese nemerteans is reviewed. Key words: checklist, Pacific, classification, ribbon worm, Nemertinea 2001). The only recent listing of previously described Japa- INTRODUCTION nese species is the checklist of Crandall et al. (2002), but The phylum Nemertea comprises about 1,200 species the relevant literature is scattered. -
Testing Adaptive Hypotheses on the Evolution of Larval Life History in Acorn and Stalked Barnacles
Received: 10 May 2019 | Revised: 10 August 2019 | Accepted: 19 August 2019 DOI: 10.1002/ece3.5645 ORIGINAL RESEARCH Testing adaptive hypotheses on the evolution of larval life history in acorn and stalked barnacles Christine Ewers‐Saucedo1 | Paula Pappalardo2 1Department of Genetics, University of Georgia, Athens, GA, USA Abstract 2Odum School of Ecology, University of Despite strong selective pressure to optimize larval life history in marine environ‐ Georgia, Athens, GA, USA ments, there is a wide diversity with regard to developmental mode, size, and time Correspondence larvae spend in the plankton. In the present study, we assessed if adaptive hypoth‐ Christine Ewers‐Saucedo, Zoological eses explain the distribution of the larval life history of thoracican barnacles within a Museum of the Christian‐Albrechts University Kiel, Hegewischstrasse 3, 24105 strict phylogenetic framework. We collected environmental and larval trait data for Kiel, Germany. 170 species from the literature, and utilized a complete thoracican synthesis tree to Email: ewers‐[email protected]‐kiel. de account for phylogenetic nonindependence. In accordance with Thorson's rule, the fraction of species with planktonic‐feeding larvae declined with water depth and in‐ creased with water temperature, while the fraction of brooding species exhibited the reverse pattern. Species with planktonic‐nonfeeding larvae were overall rare, follow‐ ing no apparent trend. In agreement with the “size advantage” hypothesis proposed by Strathmann in 1977, egg and larval size were closely correlated. Settlement‐com‐ petent cypris larvae were larger in cold water, indicative of advantages for large ju‐ veniles when growth is slowed. Planktonic larval duration, on the other hand, was uncorrelated to environmental variables. -
Data Sources the Next 64 Pages Comprise a Reference List
SUPPORTING INFORMATION APPENDIX 1: Data Sources The next 64 pages comprise a reference list for all literary sources given as references for trait scores and/or comments in the sFDvent raw (marked with an asterisk (*) if not then included in recommended) and/or recommended datasets (Tables S4.3 and S4.2, respectively). These references are not in alphabetical order, as the database is a ‘living’ record, so new references will be added and a new number assigned. In the recommended dataset (Table S4.2), the references are recorded according to the numbers listed below (and in Table S1.1), to ensure that citations are relatively easy for users to carry through when conducting analyses using subsets of the data, for example. If a score in the recommended dataset is supported by more than one reference, multiple reference identifiers are provided and separated by a semi-colon (;). The references are not provided as numbers / identifiers in the other versions of the dataset, as information is lost during this processing step (e.g., ‘expert opinion’, or 66, replaces comments made by experts in each reference column regarding additional observations, rationale for certainty scores, etc.), which may prove useful for some users. Other versions of the dataset thus maintain raw reference entries for transparency and as potentially useful metadata. We provide a copy of the recommended dataset without the references as numbers (Table S4.2A), in case it is easier for users to cross-reference between the two sheets to seek additional comments for a given data subset of interest. 1. Aguado, M.