Comprehensive Behavioral Analysis of Mice Deficient in Rapgef2 And
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Protein-Coding Variants Implicate Novel Genes Related to Lipid Homeostasis
bioRxiv preprint doi: https://doi.org/10.1101/352674; this version posted June 30, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 PROTEIN-CODING VARIANTS IMPLICATE NOVEL GENES RELATED TO LIPID HOMEOSTASIS 2 CONTRIBUTING TO BODY FAT DISTRIBUTION 3 Anne E Justice¥,1,2, Tugce Karaderi¥,3,4, Heather M Highland¥,1,5, Kristin L Young¥,1, Mariaelisa Graff¥,1, 4 Yingchang Lu¥,6,7,8, Valérie Turcot9, Paul L Auer10, Rebecca S Fine11,12,13, Xiuqing Guo14, Claudia 5 Schurmann7,8, Adelheid Lempradl15, Eirini Marouli16, Anubha Mahajan3, Thomas W Winkler17, Adam E 6 Locke18,19, Carolina Medina-Gomez20,21, Tõnu Esko11,13,22, Sailaja Vedantam11,12,13, Ayush Giri23, Ken Sin 7 Lo9, Tamuno Alfred7, Poorva Mudgal24, Maggie CY Ng24,25, Nancy L Heard-Costa26,27, Mary F Feitosa28, 8 Alisa K Manning11,29,30 , Sara M Willems31, Suthesh Sivapalaratnam30,32,33, Goncalo Abecasis18, Dewan S 9 Alam34, Matthew Allison35, Philippe Amouyel36,37,38, Zorayr Arzumanyan14, Beverley Balkau39, Lisa 10 Bastarache40, Sven Bergmann41,42, Lawrence F Bielak43, Matthias Blüher44,45, Michael Boehnke18, Heiner 11 Boeing46, Eric Boerwinkle47,48, Carsten A Böger49, Jette Bork-Jensen50, Erwin P Bottinger7, Donald W 12 Bowden24,25,51, Ivan Brandslund52,53, Linda Broer21, Amber A Burt54, Adam S Butterworth55,56, Mark J 13 Caulfield16,57, Giancarlo Cesana58, John C Chambers59,60,61,62,63, Daniel I Chasman11,64,65,66, Yii-Der Ida 14 Chen14, Rajiv Chowdhury55, Cramer Christensen67, -
DLL1- and DLL4-Mediated Notch Signaling Is Essential for Adult Pancreatic Islet
Page 1 of 41 Diabetes DLL1- and DLL4-mediated Notch signaling is essential for adult pancreatic islet homeostasis (running title –Role of Delta ligands in adult pancreas) Marina Rubey1,2,6*, Nirav Florian Chhabra1,2*, Daniel Gradinger1,2,7, Adrián Sanz-Moreno1, Heiko Lickert2,4,5, Gerhard K. H. Przemeck1,2, Martin Hrabě de Angelis1,2,3** 1 Helmholtz Zentrum München, Institute of Experimental Genetics and German Mouse Clinic, Neuherberg, Germany 2 German Center for Diabetes Research (DZD), Neuherberg, Germany 3 Chair of Experimental Genetics, Centre of Life and Food Sciences, Weihenstephan, Technische Universität München, Freising, Germany 4 Helmholtz Zentrum München, Institute of Diabetes and Regeneration Research and Institute of Stem Cell Research, Neuherberg, Germany 5 Technische Universität München, Medical Faculty, Munich, Germany 6 Present address Marina Rubey: WMC Healthcare GmbH, Munich, Germany 7 Present address Daniel Gradinger: PSI CRO AG, Munich, Germany *These authors contributed equally **Corresponding author: Prof. Dr. Martin Hrabě de Angelis, Helmholtz Zentrum München, German Research Center for Environmental Health, Institute of Experimental Genetics, Ingolstädter Landstr.1, 85764 Neuherberg, Germany. Phone: +49-89-3187-3502. Fax: +49- 89-3187-3500. E-mail address: [email protected] Word count – 4088 / Figures – 7 Diabetes Publish Ahead of Print, published online February 6, 2020 Diabetes Page 2 of 41 Abstract Genes of the Notch signaling pathway are expressed in different cell types and organs at different time points during embryonic development and adulthood. The Notch ligand Delta- like 1 (DLL1) controls the decision between endocrine and exocrine fates of multipotent progenitors in the developing pancreas, and loss of Dll1 leads to premature endocrine differentiation. -
Increased Microvascular Permeability in Mice Lacking Epac1 (Rapgef3)
Increased microvascular permeability in mice lacking Epac1 (Rapgef3) Kopperud, R. K.; Rygh, C. Brekke; Karlsen, T. V.; Krakstad, C.; Kleppe, R.; Hoivik, E. A.; Bakke, M.; Tenstad, O.; Selheim, F.; Lidén, Å.; Madsen, Lise; Pavlin, T.; Taxt, T.; Kristiansen, Karsten; Curry, F. -R. E.; Reed, R. K.; Døskeland, S. O. Published in: Acta Physiologica DOI: 10.1111/apha.12697 Publication date: 2017 Document version Publisher's PDF, also known as Version of record Document license: CC BY-NC-ND Citation for published version (APA): Kopperud, R. K., Rygh, C. B., Karlsen, T. V., Krakstad, C., Kleppe, R., Hoivik, E. A., Bakke, M., Tenstad, O., Selheim, F., Lidén, Å., Madsen, L., Pavlin, T., Taxt, T., Kristiansen, K., Curry, F. -R. E., Reed, R. K., & Døskeland, S. O. (2017). Increased microvascular permeability in mice lacking Epac1 (Rapgef3). Acta Physiologica, 219(2), 441-452. https://doi.org/10.1111/apha.12697 Download date: 30. Sep. 2021 Acta Physiol 2017, 219, 441–452 Increased microvascular permeability in mice lacking Epac1 (Rapgef3) † § R. K. Kopperud,1,2,*, C. Brekke Rygh,1,*, T. V. Karlsen,1 C. Krakstad,1 R. Kleppe,1 † ¶ ‡ E. A. Hoivik,1, M. Bakke,1 O. Tenstad,1 F. Selheim,1 A. Liden, 1, L. Madsen,1,3, T. Pavlin,1 T. Taxt,1 K. Kristiansen,3 F.-R. E. Curry,4 R. K. Reed1,2 and S. O. Døskeland1 1 Department of Biomedicine, University of Bergen, Bergen, Norway 2 Centre for Cancer Biomarkers (CCBIO), University of Bergen, Bergen, Norway 3 Department of Biology, University of Copenhagen, Copenhagen, Denmark 4 Department of Physiology and Membrane Biology, School of Medicine, University of California, Davis, CA, USA Received 18 February 2016, Abstract revision requested 15 March Aim: Maintenance of the blood and extracellular volume requires tight con- 2016, trol of endothelial macromolecule permeability, which is regulated by cAMP revision received 12 April 2016, signalling. -
Human Induced Pluripotent Stem Cell–Derived Podocytes Mature Into Vascularized Glomeruli Upon Experimental Transplantation
BASIC RESEARCH www.jasn.org Human Induced Pluripotent Stem Cell–Derived Podocytes Mature into Vascularized Glomeruli upon Experimental Transplantation † Sazia Sharmin,* Atsuhiro Taguchi,* Yusuke Kaku,* Yasuhiro Yoshimura,* Tomoko Ohmori,* ‡ † ‡ Tetsushi Sakuma, Masashi Mukoyama, Takashi Yamamoto, Hidetake Kurihara,§ and | Ryuichi Nishinakamura* *Department of Kidney Development, Institute of Molecular Embryology and Genetics, and †Department of Nephrology, Faculty of Life Sciences, Kumamoto University, Kumamoto, Japan; ‡Department of Mathematical and Life Sciences, Graduate School of Science, Hiroshima University, Hiroshima, Japan; §Division of Anatomy, Juntendo University School of Medicine, Tokyo, Japan; and |Japan Science and Technology Agency, CREST, Kumamoto, Japan ABSTRACT Glomerular podocytes express proteins, such as nephrin, that constitute the slit diaphragm, thereby contributing to the filtration process in the kidney. Glomerular development has been analyzed mainly in mice, whereas analysis of human kidney development has been minimal because of limited access to embryonic kidneys. We previously reported the induction of three-dimensional primordial glomeruli from human induced pluripotent stem (iPS) cells. Here, using transcription activator–like effector nuclease-mediated homologous recombination, we generated human iPS cell lines that express green fluorescent protein (GFP) in the NPHS1 locus, which encodes nephrin, and we show that GFP expression facilitated accurate visualization of nephrin-positive podocyte formation in -
Selective Small-Molecule EPAC Activators
Heriot-Watt University Research Gateway Selective small-molecule EPAC activators Citation for published version: Luchowska-Staska, U, Morgan, D, Yarwood, SJ & Barker, G 2019, 'Selective small-molecule EPAC activators', Biochemical Society Transactions, vol. 47, no. 5, pp. 1415-1427. https://doi.org/10.1042/BST20190254 Digital Object Identifier (DOI): 10.1042/BST20190254 Link: Link to publication record in Heriot-Watt Research Portal Document Version: Publisher's PDF, also known as Version of record Published In: Biochemical Society Transactions Publisher Rights Statement: © 2019 The Author(s). This is an open access article published by Portland Press Limited on behalf of the Biochemical Society and distributed under the Creative Commons Attribution License 4.0 (CC BY). General rights Copyright for the publications made accessible via Heriot-Watt Research Portal is retained by the author(s) and / or other copyright owners and it is a condition of accessing these publications that users recognise and abide by the legal requirements associated with these rights. Take down policy Heriot-Watt University has made every reasonable effort to ensure that the content in Heriot-Watt Research Portal complies with UK legislation. If you believe that the public display of this file breaches copyright please contact [email protected] providing details, and we will remove access to the work immediately and investigate your claim. Download date: 30. Sep. 2021 Biochemical Society Transactions (2019) https://doi.org/10.1042/BST20190254 Review Article Selective small-molecule EPAC activators Urszula Luchowska-Stanská 1, David Morgan2, Stephen J. Yarwood1 and Graeme Barker2 1 2 Institute of Biological Chemistry, Biophysics, and Bioengineering, Heriot-Watt University, Edinburgh EH14 4AS, U.K.; Institute of Chemical Sciences, Heriot-Watt University, Downloaded from https://portlandpress.com/biochemsoctrans/article-pdf/doi/10.1042/BST20190254/857286/bst-2019-0254c.pdf by Heriot-Watt University user on 21 October 2019 Edinburgh EH14 4AS, U.K. -
Small Gtpases of the Ras and Rho Families Switch On/Off Signaling
International Journal of Molecular Sciences Review Small GTPases of the Ras and Rho Families Switch on/off Signaling Pathways in Neurodegenerative Diseases Alazne Arrazola Sastre 1,2, Miriam Luque Montoro 1, Patricia Gálvez-Martín 3,4 , Hadriano M Lacerda 5, Alejandro Lucia 6,7, Francisco Llavero 1,6,* and José Luis Zugaza 1,2,8,* 1 Achucarro Basque Center for Neuroscience, Science Park of the Universidad del País Vasco/Euskal Herriko Unibertsitatea (UPV/EHU), 48940 Leioa, Spain; [email protected] (A.A.S.); [email protected] (M.L.M.) 2 Department of Genetics, Physical Anthropology, and Animal Physiology, Faculty of Science and Technology, UPV/EHU, 48940 Leioa, Spain 3 Department of Pharmacy and Pharmaceutical Technology, Faculty of Pharmacy, University of Granada, 180041 Granada, Spain; [email protected] 4 R&D Human Health, Bioibérica S.A.U., 08950 Barcelona, Spain 5 Three R Labs, Science Park of the UPV/EHU, 48940 Leioa, Spain; [email protected] 6 Faculty of Sport Science, European University of Madrid, 28670 Madrid, Spain; [email protected] 7 Research Institute of the Hospital 12 de Octubre (i+12), 28041 Madrid, Spain 8 IKERBASQUE, Basque Foundation for Science, 48013 Bilbao, Spain * Correspondence: [email protected] (F.L.); [email protected] (J.L.Z.) Received: 25 July 2020; Accepted: 29 August 2020; Published: 31 August 2020 Abstract: Small guanosine triphosphatases (GTPases) of the Ras superfamily are key regulators of many key cellular events such as proliferation, differentiation, cell cycle regulation, migration, or apoptosis. To control these biological responses, GTPases activity is regulated by guanine nucleotide exchange factors (GEFs), GTPase activating proteins (GAPs), and in some small GTPases also guanine nucleotide dissociation inhibitors (GDIs). -
Anxiety and Depression with Neurogenesis Defects in Exchange
OPEN Citation: Transl Psychiatry (2016) 6, e881; doi:10.1038/tp.2016.129 www.nature.com/tp ORIGINAL ARTICLE Anxiety and depression with neurogenesis defects in exchange protein directly activated by cAMP 2-deficient mice are ameliorated by a selective serotonin reuptake inhibitor, Prozac L Zhou1,10,SLMa2,10, PKK Yeung1,3, YH Wong4,5, KWK Tsim5,6,KFSo1,7,8,9, LCW Lam2 and SK Chung1,3,7 Intracellular cAMP and serotonin are important modulators of anxiety and depression. Fluoxetine, a selective serotonin reuptake inhibitor (SSRI) also known as Prozac, is widely used against depression, potentially by activating cAMP response element-binding protein (CREB) and increasing brain-derived neurotrophic factor (BDNF) through protein kinase A (PKA). However, the role of Epac1 and Epac2 (Rap guanine nucleotide exchange factors, RAPGEF3 and RAPGEF4, respectively) as potential downstream targets of SSRI/cAMP in mood regulations is not yet clear. Here, we investigated the phenotypes of Epac1 (Epac1− / −) or Epac2 (Epac2− / −) knockout mice by comparing them with their wild-type counterparts. Surprisingly, Epac2− / − mice exhibited a wide range of mood disorders, including anxiety and depression with learning and memory deficits in contextual and cued fear-conditioning tests without affecting Epac1 expression or PKA activity. Interestingly, rs17746510, one of the three single-nucleotide polymorphisms (SNPs) in RAPGEF4 associated with cognitive decline in Chinese Alzheimer’s disease (AD) patients, was significantly correlated with apathy and mood disturbance, whereas no significant association was observed between RAPGEF3 SNPs and the risk of AD or neuropsychiatric inventory scores. To further determine the detailed role of Epac2 in SSRI/serotonin/cAMP-involved mood disorders, we treated Epac2− / − mice with a SSRI, Prozac. -
Elucidating the Role of EPAC-Rap1 Signaling Pathway in the Blood
Elucidating the Role of EPAC-Rap1 Signaling Pathway in the Blood-Retinal Barrier By Carla Jhoana Ramos A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy (Cellular and Molecular Biology) in The University of Michigan 2017 Doctoral Committee: Professor David A. Antonetti, Chair Professor Christin Carter-Su Associate Professor Philip J. Gage Professor Ben Margolis Assistant Professor Ann L. Miller Image of exchange factor directly activated by cAMP (EPAC), Ras-related protein (Rap1) and Zonula occludens-1 (ZO-1) immunofluorescent staining in bovine retinal endothelial cells, obtained by confocal microscopy. Carla Jhoana Ramos [email protected] ORCID iD: 0000-0001-5041-6758 © Carla Jhoana Ramos 2017 DEDICATION This dissertation is dedicated to my mother Victoria de Jesus Larios de Ramos, my father Jose Carlos Ramos, and my younger brother Hilmar Ramos. My parents migrated from El Salvador to the USA in search of better opportunities and dedicated their lives to providing us with a good education. They have instilled in me determination, perseverance and strength. Finally, my experience observing my mother cope with more than 26 years of diabetes and 10 years of mild diabetic retinopathy led me into diabetes research at the University of Michigan. ii ACKNOWLEDGEMENTS The completion of this dissertation has been made possible by the support from my community of mentors, friends and family. I would like to first thank my mentor David Antonetti, who gave me the opportunity to train in his laboratory under his guidance during these last 6 years. Additionally, I would like to thank my thesis committee: Ben Margolis, Christin Carter-Su, Philip Gage, and Ann Miller whose suggestions, questions, and scientific discussions helped improve the quality of this thesis and for their constant support and encouragement. -
Rnai Screen Indicates Widespread Biological Function for Human Natural Antisense Transcripts
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by PubMed Central RNAi Screen Indicates Widespread Biological Function for Human Natural Antisense Transcripts Mohammad Ali Faghihi1, Jannet Kocerha1¤, Farzaneh Modarresi1,Pa¨r G. Engstro¨ m3, Alistair M. Chalk4, Shaun P. Brothers1, Eric Koesema2, Georges St. Laurent III5,6, Claes Wahlestedt1,2* 1 Department of Neuroscience, The Scripps Research Institute, Jupiter, Florida, United States of America, 2 Department of Molecular Therapeutics, The Scripps Research Institute, Jupiter, Florida, United States of America, 3 Bioinformatics Institute, Hinxton, Cambridge, United Kingdom, 4 National Centre for Adult Stem Cell Research, Eskitis Institute for Cell and Molecular Therapies, Griffith University, Brisbane, Australia, 5 Department of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, Rhode Island, United States of America, 6 Immunovirology-Biogenisis Group, University of Antioquia, Medellin, Colombia Abstract Natural antisense transcripts represent a class of regulatory RNA molecules, which are characterized by their complementary sequence to another RNA transcript. Extensive sequencing efforts suggest that natural antisense transcripts are prevalent throughout the mammalian genome; however, their biological significance has not been well defined. We performed a loss- of-function RNA interference (RNAi) screen, which targeted 797 evolutionary conserved antisense transcripts, and found evidence for a regulatory role for a number of natural antisense transcripts. Specifically, we found that natural antisense transcripts for CCPG1 and RAPGEF3 may functionally disrupt signaling pathways and corresponding biological phenotypes, such as cell viability, either independently or in parallel with the corresponding sense transcript. Our results show that the large-scale siRNA screen can be applied to evaluate natural antisense transcript modulation of fundamental cellular events. -
The Role of TWIST1 in Multiple Myeloma
The Role of TWIST1 in Multiple Myeloma Chee Man Cheong, BHSc (Hons) Myeloma Research Group Discipline of Physiology Adelaide Medical School Faculty of Health and Medical Sciences The University of Adelaide & Cancer Theme South Australian Health & Medical Research Institute (SAHMRI) A thesis submitted for the degree of Doctor of Philosophy December 2016 TABLE OF CONTENTS TABLE OF CONTENTS ................................................................. i LIST OF FIGURES ....................................................................... iv LIST OF TABLES ........................................................................ vii ABSTRACT .................................................................................... ix DECLARATION ............................................................................ xi ACKNOWLEDGEMENTS .......................................................... xii LIST OF ABBREVIATIONS ..................................................... xiv LIST OF PUBLICATIONS ........................................................ xvii Chapter 1 : Introduction ................................................................ 1 1.1 Overview ............................................................................................................2 1.2 Multiple Myeloma ..............................................................................................3 1.2.1 Clinical manifestations of multiple myeloma ....................................................... 3 1.2.2 Epidemiology of multiple myeloma ..................................................................... -
Exploring the Role of Rapgef6 in Neuropsychiatric Disorders
Exploring the Role of Rapgef6 in Neuropsychiatric Disorders Rebecca Jeannette Levy Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy under the Executive Committee of the Graduate School of Arts and Sciences COLUMBIA UNIVERSITY 2013 © 2012 Rebecca Jeannette Levy All rights reserved ABSTRACT Exploring the role of Rapgef6 in neuropsychiatric disorders Rebecca Jeannette Levy Schizophrenia is highly heritable yet there are few confirmed, causal mutations. In human genetic studies, we discovered CNVs impacting RAPGEF6 and RAPGEF2. Behavioral analysis of a mouse modeling Rapgef6 deletion determined that amygdala function was the most impaired behavioral domain as measured by reduced fear conditioning and anxiolysis. More disseminated behavioral functions such as startle and prepulse inhibition were also reduced, while locomotion was increased. Hippocampal-dependent spatial memory was intact, as was prefrontal cortex function on a working memory task. Neural activation as measured by cFOS levels demonstrated a reduction in hippocampal and amygdala activation after fear conditioning. In vivo neural morphology assessment found CA3 spine density and primary dendrite number were reduced in knock out animals but additional hippocampal measurements were unaffected. Furthermore, amygdala spine density and prefrontal cortex dendrites were not changed. Considering all levels of analysis, the Rapgef6 mouse was most impaired in hippocampal and amygdala function, brain regions implicated in schizophrenia pathophysiology at a variety of levels. The exact cause of Rapgef6 pathology has not yet been determined, but the dysfunction appears to be due to subtle spine density changes as well as synaptic hypoactivity. Continued investigation may yield a deeper understanding of amygdala and hippocampal pathophysiology, particularly contributing to negative symptoms, as well as novel therapeutic targets in schizophrenia. -
Novel Cyclic Adenosine Monophosphate (Camp) Signalling
University of Groningen Novel cyclic AMP signalling avenues in learning and memory Ostroveanu, A IMPORTANT NOTE: You are advised to consult the publisher's version (publisher's PDF) if you wish to cite from it. Please check the document version below. Document Version Publisher's PDF, also known as Version of record Publication date: 2009 Link to publication in University of Groningen/UMCG research database Citation for published version (APA): Ostroveanu, A. (2009). Novel cyclic AMP signalling avenues in learning and memory. s.n. Copyright Other than for strictly personal use, it is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), unless the work is under an open content license (like Creative Commons). The publication may also be distributed here under the terms of Article 25fa of the Dutch Copyright Act, indicated by the “Taverne” license. More information can be found on the University of Groningen website: https://www.rug.nl/library/open-access/self-archiving-pure/taverne- amendment. Take-down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Downloaded from the University of Groningen/UMCG research database (Pure): http://www.rug.nl/research/portal. For technical reasons the number of authors shown on this cover page is limited to 10 maximum. Download date: 10-10-2021 Novel cyclic AMP signalling avenues in learning and memory A. Ostroveanu The studies described in this thesis were performed at the Department of Molecular Neurobiology, Faculty of Mathematics and Natural Sciences, University of Groningen.