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DLL1- and DLL4-Mediated Notch Signaling Is Essential for Adult Pancreatic Islet
Page 1 of 41 Diabetes DLL1- and DLL4-mediated Notch signaling is essential for adult pancreatic islet homeostasis (running title –Role of Delta ligands in adult pancreas) Marina Rubey1,2,6*, Nirav Florian Chhabra1,2*, Daniel Gradinger1,2,7, Adrián Sanz-Moreno1, Heiko Lickert2,4,5, Gerhard K. H. Przemeck1,2, Martin Hrabě de Angelis1,2,3** 1 Helmholtz Zentrum München, Institute of Experimental Genetics and German Mouse Clinic, Neuherberg, Germany 2 German Center for Diabetes Research (DZD), Neuherberg, Germany 3 Chair of Experimental Genetics, Centre of Life and Food Sciences, Weihenstephan, Technische Universität München, Freising, Germany 4 Helmholtz Zentrum München, Institute of Diabetes and Regeneration Research and Institute of Stem Cell Research, Neuherberg, Germany 5 Technische Universität München, Medical Faculty, Munich, Germany 6 Present address Marina Rubey: WMC Healthcare GmbH, Munich, Germany 7 Present address Daniel Gradinger: PSI CRO AG, Munich, Germany *These authors contributed equally **Corresponding author: Prof. Dr. Martin Hrabě de Angelis, Helmholtz Zentrum München, German Research Center for Environmental Health, Institute of Experimental Genetics, Ingolstädter Landstr.1, 85764 Neuherberg, Germany. Phone: +49-89-3187-3502. Fax: +49- 89-3187-3500. E-mail address: [email protected] Word count – 4088 / Figures – 7 Diabetes Publish Ahead of Print, published online February 6, 2020 Diabetes Page 2 of 41 Abstract Genes of the Notch signaling pathway are expressed in different cell types and organs at different time points during embryonic development and adulthood. The Notch ligand Delta- like 1 (DLL1) controls the decision between endocrine and exocrine fates of multipotent progenitors in the developing pancreas, and loss of Dll1 leads to premature endocrine differentiation. -
Small Gtpases of the Ras and Rho Families Switch On/Off Signaling
International Journal of Molecular Sciences Review Small GTPases of the Ras and Rho Families Switch on/off Signaling Pathways in Neurodegenerative Diseases Alazne Arrazola Sastre 1,2, Miriam Luque Montoro 1, Patricia Gálvez-Martín 3,4 , Hadriano M Lacerda 5, Alejandro Lucia 6,7, Francisco Llavero 1,6,* and José Luis Zugaza 1,2,8,* 1 Achucarro Basque Center for Neuroscience, Science Park of the Universidad del País Vasco/Euskal Herriko Unibertsitatea (UPV/EHU), 48940 Leioa, Spain; [email protected] (A.A.S.); [email protected] (M.L.M.) 2 Department of Genetics, Physical Anthropology, and Animal Physiology, Faculty of Science and Technology, UPV/EHU, 48940 Leioa, Spain 3 Department of Pharmacy and Pharmaceutical Technology, Faculty of Pharmacy, University of Granada, 180041 Granada, Spain; [email protected] 4 R&D Human Health, Bioibérica S.A.U., 08950 Barcelona, Spain 5 Three R Labs, Science Park of the UPV/EHU, 48940 Leioa, Spain; [email protected] 6 Faculty of Sport Science, European University of Madrid, 28670 Madrid, Spain; [email protected] 7 Research Institute of the Hospital 12 de Octubre (i+12), 28041 Madrid, Spain 8 IKERBASQUE, Basque Foundation for Science, 48013 Bilbao, Spain * Correspondence: [email protected] (F.L.); [email protected] (J.L.Z.) Received: 25 July 2020; Accepted: 29 August 2020; Published: 31 August 2020 Abstract: Small guanosine triphosphatases (GTPases) of the Ras superfamily are key regulators of many key cellular events such as proliferation, differentiation, cell cycle regulation, migration, or apoptosis. To control these biological responses, GTPases activity is regulated by guanine nucleotide exchange factors (GEFs), GTPase activating proteins (GAPs), and in some small GTPases also guanine nucleotide dissociation inhibitors (GDIs). -
The Role of TWIST1 in Multiple Myeloma
The Role of TWIST1 in Multiple Myeloma Chee Man Cheong, BHSc (Hons) Myeloma Research Group Discipline of Physiology Adelaide Medical School Faculty of Health and Medical Sciences The University of Adelaide & Cancer Theme South Australian Health & Medical Research Institute (SAHMRI) A thesis submitted for the degree of Doctor of Philosophy December 2016 TABLE OF CONTENTS TABLE OF CONTENTS ................................................................. i LIST OF FIGURES ....................................................................... iv LIST OF TABLES ........................................................................ vii ABSTRACT .................................................................................... ix DECLARATION ............................................................................ xi ACKNOWLEDGEMENTS .......................................................... xii LIST OF ABBREVIATIONS ..................................................... xiv LIST OF PUBLICATIONS ........................................................ xvii Chapter 1 : Introduction ................................................................ 1 1.1 Overview ............................................................................................................2 1.2 Multiple Myeloma ..............................................................................................3 1.2.1 Clinical manifestations of multiple myeloma ....................................................... 3 1.2.2 Epidemiology of multiple myeloma ..................................................................... -
Exploring the Role of Rapgef6 in Neuropsychiatric Disorders
Exploring the Role of Rapgef6 in Neuropsychiatric Disorders Rebecca Jeannette Levy Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy under the Executive Committee of the Graduate School of Arts and Sciences COLUMBIA UNIVERSITY 2013 © 2012 Rebecca Jeannette Levy All rights reserved ABSTRACT Exploring the role of Rapgef6 in neuropsychiatric disorders Rebecca Jeannette Levy Schizophrenia is highly heritable yet there are few confirmed, causal mutations. In human genetic studies, we discovered CNVs impacting RAPGEF6 and RAPGEF2. Behavioral analysis of a mouse modeling Rapgef6 deletion determined that amygdala function was the most impaired behavioral domain as measured by reduced fear conditioning and anxiolysis. More disseminated behavioral functions such as startle and prepulse inhibition were also reduced, while locomotion was increased. Hippocampal-dependent spatial memory was intact, as was prefrontal cortex function on a working memory task. Neural activation as measured by cFOS levels demonstrated a reduction in hippocampal and amygdala activation after fear conditioning. In vivo neural morphology assessment found CA3 spine density and primary dendrite number were reduced in knock out animals but additional hippocampal measurements were unaffected. Furthermore, amygdala spine density and prefrontal cortex dendrites were not changed. Considering all levels of analysis, the Rapgef6 mouse was most impaired in hippocampal and amygdala function, brain regions implicated in schizophrenia pathophysiology at a variety of levels. The exact cause of Rapgef6 pathology has not yet been determined, but the dysfunction appears to be due to subtle spine density changes as well as synaptic hypoactivity. Continued investigation may yield a deeper understanding of amygdala and hippocampal pathophysiology, particularly contributing to negative symptoms, as well as novel therapeutic targets in schizophrenia. -
Transposon Mutagenesis Identifies Genetic Drivers of Brafv600e Melanoma
ARTICLES Transposon mutagenesis identifies genetic drivers of BrafV600E melanoma Michael B Mann1,2, Michael A Black3, Devin J Jones1, Jerrold M Ward2,12, Christopher Chin Kuan Yew2,12, Justin Y Newberg1, Adam J Dupuy4, Alistair G Rust5,12, Marcus W Bosenberg6,7, Martin McMahon8,9, Cristin G Print10,11, Neal G Copeland1,2,13 & Nancy A Jenkins1,2,13 Although nearly half of human melanomas harbor oncogenic BRAFV600E mutations, the genetic events that cooperate with these mutations to drive melanogenesis are still largely unknown. Here we show that Sleeping Beauty (SB) transposon-mediated mutagenesis drives melanoma progression in BrafV600E mutant mice and identify 1,232 recurrently mutated candidate cancer genes (CCGs) from 70 SB-driven melanomas. CCGs are enriched in Wnt, PI3K, MAPK and netrin signaling pathway components and are more highly connected to one another than predicted by chance, indicating that SB targets cooperative genetic networks in melanoma. Human orthologs of >500 CCGs are enriched for mutations in human melanoma or showed statistically significant clinical associations between RNA abundance and survival of patients with metastatic melanoma. We also functionally validate CEP350 as a new tumor-suppressor gene in human melanoma. SB mutagenesis has thus helped to catalog the cooperative molecular mechanisms driving BRAFV600E melanoma and discover new genes with potential clinical importance in human melanoma. Substantial sun exposure and numerous genetic factors, including including BrafV600E, recapitulate the genetic and histological hallmarks skin type and family history, are the most important melanoma risk of human melanoma. In these models, increased MEK-ERK signaling factors. Familial melanoma, which accounts for <10% of cases, is asso- initiates clonal expansion of melanocytes, which is limited by oncogene- ciated with mutations in CDKN2A1, MITF2 and POT1 (refs. -
NCS-Rapgef2, the Protein Product of the Neuronal Rapgef2 Gene, Is a Specific Activator of D1 Dopamine Receptor-Dependent ERK Phosphorylation in Mouse Brain
This Accepted Manuscript has not been copyedited and formatted. The final version may differ from this version. A link to any extended data will be provided when the final version is posted online. Research Article: New Research | Neuronal Excitability NCS-Rapgef2, the Protein Product of the Neuronal Rapgef2 Gene, Is a Specific Activator of D1 Dopamine Receptor-Dependent ERK Phosphorylation in Mouse Brain. NCS-Rapgef2 and D1-dependent ERK activation in CNS Sunny Zhihong Jiang1, Wenqin Xu1,2, Andrew C. Emery1, Charles R. Gerfen3, Maribeth V. Eiden2 and Lee E. Eiden1 1Section on Molecular Neuroscience, National Institute of Mental Health Intramural Research Program, Bethesda, MD 20892, USA 2Section on Directed Gene Transfer Laboratory of Cellular and Molecular Regulation, National Institute of Mental Health Intramural Research Program, Bethesda, MD 20892, USA 3Laboratory of Systems Neuroscience, National Institute of Mental Health Intramural Research Program, Bethesda, MD 20892, USA DOI: 10.1523/ENEURO.0248-17.2017 Received: 14 July 2017 Revised: 21 August 2017 Accepted: 26 August 2017 Published: 11 September 2017 Author contributions: S.Z.J., W.X., A.C.E., M.V.E., and L.E. designed research; S.Z.J., W.X., A.C.E., and L.E. performed research; S.Z.J., W.X., A.C.E., C.G., M.V.E., and L.E. analyzed data; S.Z.J., W.X., A.C.E., C.G., M.V.E., and L.E. wrote the paper; W.X., C.G., and M.V.E. contributed unpublished reagents/analytic tools. Funding: NIMH Intramural Research Program MH002386 Funding: NIMH Intramural Research Program MH002592 The authors declare no competing financial interests. -
Modeling of RAS Complexes Supports Roles in Cancer for Less Studied Partners H
The Author(s) BMC Biophysics 2017, 10(Suppl 1):5 DOI 10.1186/s13628-017-0037-6 RESEARCH Open Access Modeling of RAS complexes supports roles in cancer for less studied partners H. Billur Engin, Daniel Carlin, Dexter Pratt and Hannah Carter* From VarI-SIG 2016: identification and annotation of genetic variants in the context of structure, function, and disease Orlando, Florida, USA. 09 July 2016 Abstract Background: RAS protein interactions have predominantly been studied in the context of the RAF and PI3kinase oncogenic pathways. Structural modeling and X-ray crystallography have demonstrated that RAS isoforms bind to canonical downstream effector proteins in these pathways using the highly conserved switch I and II regions. Other non-canonical RAS protein interactions have been experimentally identified, however it is not clear whether these proteins also interact with RAS via the switch regions. Results: To address this question we constructed a RAS isoform-specific protein-protein interaction network and predicted 3D complexes involving RAS isoforms and interaction partners to identify the most probable interaction interfaces. The resulting models correctly captured the binding interfaces for well-studied effectors, and additionally implicated residues in the allosteric and hyper-variable regions of RAS proteins as the predominant binding site for non-canonical effectors. Several partners binding to this new interface (SRC, LGALS1, RABGEF1, CALM and RARRES3) have been implicated as important regulators of oncogenic RAS signaling. We further used these models to investigate competitive binding and multi-protein complexes compatible with RAS surface occupancy and the putative effects of somatic mutations on RAS protein interactions. Conclusions: We discuss our findings in the context of RAS localization to the plasma membrane versus within the cytoplasm and provide a list of RAS protein interactions with possible cancer-related consequences, which could help guide future therapeutic strategies to target RAS proteins. -
ENEURO.0248-17.2017.Full.Pdf
New Research Neuronal Excitability NCS-Rapgef2, the Protein Product of the Neuronal Rapgef2 Gene, Is a Specific Activator of D1 Dopamine Receptor-Dependent ERK Phosphorylation in Mouse Brain Sunny Zhihong Jiang,1 Wenqin Xu,1,2 Andrew C. Emery,1 Charles R. Gerfen,3 Maribeth V. Eiden,2 and Lee E. Eiden1 https://doi.org/10.1523/ENEURO.0248-17.2017 1Section on Molecular Neuroscience, National Institute of Mental Health Intramural Research Program, Bethesda, MD 20892, 2Section on Directed Gene Transfer Laboratory of Cellular and Molecular Regulation, National Institute of Mental Health Intramural Research Program, Bethesda, MD 20892, and 3Laboratory of Systems Neuroscience, National Institute of Mental Health Intramural Research Program, Bethesda, MD 20892 Visual Abstract The neuritogenic cAMP sensor (NCS), encoded by the Rapgef2 gene, links cAMP elevation to activation of extracellular signal-regulated kinase (ERK) in neurons and neuroendocrine cells. Trans- ducing human embryonic kidney (HEK)293 cells, which do not express Rapgef2 protein or respond to cAMP with ERK phosphorylation, with a vector encoding a Rapgef2 cDNA reconstituted cAMP- dependent ERK activation. Mutation of a single residue in the cyclic nucleotide-binding domain (CNBD) conserved across cAMP-binding pro- teins abrogated cAMP-ERK coupling, while dele- tion of the CNBD altogether resulted in constitutive ERK activation. Two types of mRNA are tran- scribed from Rapgef2 in vivo. Rapgef2 protein expression was limited to tissues, i.e., neuronal and endocrine, expressing the second type of mRNA, initiated exclusively from an alternative Significance Statement Our report demonstrates that the cAMP-regulated guanine nucleotide exchange factor neuritogenic cAMP sensor (NCS)-Rapgef2 is required for D1 receptor-dependent dopaminergic activation of the MAP kinase extracellular signal-regulated kinase (ERK) in neuroendocrine cells in culture, and in dopamine-innervated, D1 receptor-expressing regions of the adult mouse brain, including the hippocampus, amygdala and ventral striatum. -
Closely Related Rap1a and 1B Proteins Functions Suggesting Distinct Roles for the Rap1a Null Mice Have Altered Myeloid Cell
Rap1a Null Mice Have Altered Myeloid Cell Functions Suggesting Distinct Roles for the Closely Related Rap1a and 1b Proteins This information is current as Yu Li, Jingliang Yan, Pradip De, Hua-Chen Chang, Akira of September 25, 2021. Yamauchi, Kent W. Christopherson II, Nivanka C. Paranavitana, Xiaodong Peng, Chaekyun Kim, Veerendra Munugulavadla, Reuben Kapur, Hanying Chen, Weinian Shou, James C. Stone, Mark H. Kaplan, Mary C. Dinauer, Donald L. Durden and Lawrence A. Quilliam Downloaded from J Immunol 2007; 179:8322-8331; ; doi: 10.4049/jimmunol.179.12.8322 http://www.jimmunol.org/content/179/12/8322 http://www.jimmunol.org/ References This article cites 79 articles, 49 of which you can access for free at: http://www.jimmunol.org/content/179/12/8322.full#ref-list-1 Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision by guest on September 25, 2021 • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2007 by The American Association of Immunologists All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology Rap1a Null Mice Have Altered Myeloid Cell Functions Suggesting Distinct Roles for the Closely Related Rap1a and 1b Proteins1 Yu Li,2*¶ Jingliang Yan,*¶ Pradip De,ʈ Hua-Chen Chang,†‡§ Akira Yamauchi,§ Kent W. -
Genome-Wide Survey of Tandem Repeats by Nanopore Sequencing Shows That Disease-Associated Repeats Are More Polymorphic in the Ge
Mitsuhashi et al. BMC Med Genomics (2021) 14:17 https://doi.org/10.1186/s12920-020-00853-3 RESEARCH ARTICLE Open Access Genome-wide survey of tandem repeats by nanopore sequencing shows that disease-associated repeats are more polymorphic in the general population Satomi Mitsuhashi1,2* , Martin C. Frith3,4,5 and Naomichi Matsumoto1* Abstract Background: Tandem repeats are highly mutable and contribute to the development of human disease by a variety of mechanisms. It is difcult to predict which tandem repeats may cause a disease. One hypothesis is that change- able tandem repeats are the source of genetic diseases, because disease-causing repeats are polymorphic in healthy individuals. However, it is not clear whether disease-causing repeats are more polymorphic than other repeats. Methods: We performed a genome-wide survey of the millions of human tandem repeats using publicly available long read genome sequencing data from 21 humans. We measured tandem repeat copy number changes using tandem-genotypes. Length variation of known disease-associated repeats was compared to other repeat loci. Results: We found that known Mendelian disease-causing or disease-associated repeats, especially CAG and 5′UTR GGC repeats, are relatively long and polymorphic in the general population. We also show that repeat lengths of two disease-causing tandem repeats, in ATXN3 and GLS, are correlated with near-by GWAS SNP genotypes. Conclusions: We provide a catalog of polymorphic tandem repeats across a variety of repeat unit lengths and sequences, from long read sequencing data. This method especially if used in genome wide association study, may indicate possible new candidates of pathogenic or biologically important tandem repeats in human genomes. -
Ncomms5826.Pdf
ARTICLE Received 2 Dec 2013 | Accepted 25 Jul 2014 | Published 5 Sep 2014 DOI: 10.1038/ncomms5826 OPEN Cdk5-mediated phosphorylation of RapGEF2 controls neuronal migration in the developing cerebral cortex Tao Ye 1,2,3, Jacque P.K. Ip1,2,3, Amy K.Y. Fu1,2,3 & Nancy Y. Ip1,2,3 During cerebral cortex development, pyramidal neurons migrate through the intermediate zone and integrate into the cortical plate. These neurons undergo the multipolar–bipolar transition to initiate radial migration. While perturbation of this polarity acquisition leads to cortical malformations, how this process is initiated and regulated is largely unknown. Here we report that the specific upregulation of the Rap1 guanine nucleotide exchange factor, RapGEF2, in migrating neurons corresponds to the timing of this polarity transition. In utero electroporation and live-imaging studies reveal that RapGEF2 acts on the multipolar–bipolar transition during neuronal migration via a Rap1/N-cadherin pathway. Importantly, activation of RapGEF2 is controlled via phosphorylation by a serine/threonine kinase Cdk5, whose activity is largely restricted to the radial migration zone. Thus, the specific expression and Cdk5-dependent phosphorylation of RapGEF2 during multipolar–bipolar transition within the intermediate zone are essential for proper neuronal migration and wiring of the cerebral cortex. 1 Division of Life Science, The Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong, China. 2 Molecular Neuroscience Center, The Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong, China. 3 State Key Laboratory of Molecular Neuroscience, The Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong, China. -
Methylome-Wide Change Associated with Response to Electroconvulsive Therapy in Depressed Patients Lea Sirignano 1,Joseffrank 1, Laura Kranaster 2, Stephanie H
Sirignano et al. Translational Psychiatry (2021) 11:347 https://doi.org/10.1038/s41398-021-01474-9 Translational Psychiatry ARTICLE Open Access Methylome-wide change associated with response to electroconvulsive therapy in depressed patients Lea Sirignano 1,JosefFrank 1, Laura Kranaster 2, Stephanie H. Witt 1,FabianStreit 1, Lea Zillich1, Alexander Sartorius2, Marcella Rietschel 1 and Jerome C. Foo 1 Abstract Electroconvulsive therapy (ECT) is a quick-acting and powerful antidepressant treatment considered to be effective in treating severe and pharmacotherapy-resistant forms of depression. Recent studies have suggested that epigenetic mechanisms can mediate treatment response and investigations about the relationship between the effects of ECT and DNA methylation have so far largely taken candidate approaches. In the present study, we examined the effects of ECT on the methylome associated with response in depressed patients (n = 34), testing for differentially methylated CpG sites before the first and after the last ECT treatment. We identified one differentially methylated CpG site associated with the effect of ECT response (defined as >50% decrease in Hamilton Depression Rating Scale score, HDRS), TNKS (q < 0.05; p = 7.15 × 10−8). When defining response continuously (ΔHDRS), the top suggestive differentially methylated CpG site was in FKBP5 (p = 3.94 × 10−7). Regional analyses identified two differentially methylated regions on chromosomes 8 (Šídák’s p = 0.0031) and 20 (Šídák’s p = 4.2 × 10−5) associated with ΔHDRS. Functional pathway analysis did not identify any significant pathways. A confirmatory look at candidates previously proposed to be involved in ECT mechanisms found CpG sites associated with response only at the nominally significant level (p < 0.05).