Bioluminescence and Environment
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Biogeography, Community Structure and Biological Habitat Types of Subtidal Reefs on the South Island West Coast, New Zealand
Biogeography, community structure and biological habitat types of subtidal reefs on the South Island West Coast, New Zealand SCIENCE FOR CONSERVATION 281 Biogeography, community structure and biological habitat types of subtidal reefs on the South Island West Coast, New Zealand Nick T. Shears SCIENCE FOR CONSERVATION 281 Published by Science & Technical Publishing Department of Conservation PO Box 10420, The Terrace Wellington 6143, New Zealand Cover: Shallow mixed turfing algal assemblage near Moeraki River, South Westland (2 m depth). Dominant species include Plocamium spp. (yellow-red), Echinothamnium sp. (dark brown), Lophurella hookeriana (green), and Glossophora kunthii (top right). Photo: N.T. Shears Science for Conservation is a scientific monograph series presenting research funded by New Zealand Department of Conservation (DOC). Manuscripts are internally and externally peer-reviewed; resulting publications are considered part of the formal international scientific literature. Individual copies are printed, and are also available from the departmental website in pdf form. Titles are listed in our catalogue on the website, refer www.doc.govt.nz under Publications, then Science & technical. © Copyright December 2007, New Zealand Department of Conservation ISSN 1173–2946 (hardcopy) ISSN 1177–9241 (web PDF) ISBN 978–0–478–14354–6 (hardcopy) ISBN 978–0–478–14355–3 (web PDF) This report was prepared for publication by Science & Technical Publishing; editing and layout by Lynette Clelland. Publication was approved by the Chief Scientist (Research, Development & Improvement Division), Department of Conservation, Wellington, New Zealand. In the interest of forest conservation, we support paperless electronic publishing. When printing, recycled paper is used wherever possible. CONTENTS Abstract 5 1. Introduction 6 2. -
Community Ecology
Schueller 509: Lecture 12 Community ecology 1. The birds of Guam – e.g. of community interactions 2. What is a community? 3. What can we measure about whole communities? An ecology mystery story If birds on Guam are declining due to… • hunting, then bird populations will be larger on military land where hunting is strictly prohibited. • habitat loss, then the amount of land cleared should be negatively correlated with bird numbers. • competition with introduced black drongo birds, then….prediction? • ……. come up with a different hypothesis and matching prediction! $3 million/yr Why not profitable hunting instead? (Worked for the passenger pigeon: “It was the demographic nightmare of overkill and impaired reproduction. If you’re killing a species far faster than they can reproduce, the end is a mathematical certainty.” http://www.audubon.org/magazine/may-june- 2014/why-passenger-pigeon-went-extinct) Community-wide effects of loss of birds Schueller 509: Lecture 12 Community ecology 1. The birds of Guam – e.g. of community interactions 2. What is a community? 3. What can we measure about whole communities? What is an ecological community? Community Ecology • Collection of populations of different species that occupy a given area. What is a community? e.g. Microbial community of one human “YOUR SKIN HARBORS whole swarming civilizations. Your lips are a zoo teeming with well- fed creatures. In your mouth lives a microbiome so dense —that if you decided to name one organism every second (You’re Barbara, You’re Bob, You’re Brenda), you’d likely need fifty lifetimes to name them all. -
Islands in the Stream 2002: Exploring Underwater Oases
Islands in the Stream 2002: Exploring Underwater Oases NOAA: Office of Ocean Exploration Mission Three: SUMMARY Discovery of New Resources with Pharmaceutical Potential (Pharmaceutical Discovery) Exploration of Vision and Bioluminescence in Deep-sea Benthos (Vision and Bioluminescence) Microscopic view of a Pachastrellidae sponge (front) and an example of benthic bioluminescence (back). August 16 - August 31, 2002 Shirley Pomponi, Co-Chief Scientist Tammy Frank, Co-Chief Scientist John Reed, Co-Chief Scientist Edie Widder, Co-Chief Scientist Pharmaceutical Discovery Vision and Bioluminescence Harbor Branch Oceanographic Institution Harbor Branch Oceanographic Institution ABSTRACT Harbor Branch Oceanographic Institution (HBOI) scientists continued their cutting-edge exploration searching for untapped sources of new drugs, examining the visual physiology of deep-sea benthos and characterizing the habitat in the South Atlantic Bight aboard the R/V Seaward Johnson from August 16-31, 2002. Over a half-dozen new species of sponges were recorded, which may provide scientists with information leading to the development of compounds used to study, treat, or diagnose human diseases. In addition, wondrous examples of bioluminescence and emission spectra were recorded, providing scientists with more data to help them understand how benthic organisms visualize their environment. New and creative Table of Contents ways to outreach and educate the public also Key Findings and Outcomes................................2 Rationale and Objectives ....................................4 -
Understanding Bioluminescence in Dinoflagellates—How Far Have We Come?
Microorganisms 2013, 1, 3-25; doi:10.3390/microorganisms1010003 OPEN ACCESS microorganisms ISSN 2076-2607 www.mdpi.com/journal/microorganisms Review Understanding Bioluminescence in Dinoflagellates—How Far Have We Come? Martha Valiadi 1,* and Debora Iglesias-Rodriguez 2 1 Department of Evolutionary Ecology, Max Planck Institute for Evolutionary Biology, August-Thienemann-Strasse, Plӧn 24306, Germany 2 Department of Ecology, Evolution and Marine Biology, University of California Santa Barbara, Santa Barbara, CA 93106, USA; E-Mail: [email protected] * Author to whom correspondence should be addressed; E-Mail: [email protected] or [email protected]; Tel.: +49-4522-763277; Fax: +49-4522-763310. Received: 3 May 2013; in revised form: 20 August 2013 / Accepted: 24 August 2013 / Published: 5 September 2013 Abstract: Some dinoflagellates possess the remarkable genetic, biochemical, and cellular machinery to produce bioluminescence. Bioluminescent species appear to be ubiquitous in surface waters globally and include numerous cosmopolitan and harmful taxa. Nevertheless, bioluminescence remains an enigmatic topic in biology, particularly with regard to the organisms’ lifestyle. In this paper, we review the literature on the cellular mechanisms, molecular evolution, diversity, and ecology of bioluminescence in dinoflagellates, highlighting significant discoveries of the last quarter of a century. We identify significant gaps in our knowledge and conflicting information and propose some important research questions -
Updated Checklist of Marine Fishes (Chordata: Craniata) from Portugal and the Proposed Extension of the Portuguese Continental Shelf
European Journal of Taxonomy 73: 1-73 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2014.73 www.europeanjournaloftaxonomy.eu 2014 · Carneiro M. et al. This work is licensed under a Creative Commons Attribution 3.0 License. Monograph urn:lsid:zoobank.org:pub:9A5F217D-8E7B-448A-9CAB-2CCC9CC6F857 Updated checklist of marine fishes (Chordata: Craniata) from Portugal and the proposed extension of the Portuguese continental shelf Miguel CARNEIRO1,5, Rogélia MARTINS2,6, Monica LANDI*,3,7 & Filipe O. COSTA4,8 1,2 DIV-RP (Modelling and Management Fishery Resources Division), Instituto Português do Mar e da Atmosfera, Av. Brasilia 1449-006 Lisboa, Portugal. E-mail: [email protected], [email protected] 3,4 CBMA (Centre of Molecular and Environmental Biology), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal. E-mail: [email protected], [email protected] * corresponding author: [email protected] 5 urn:lsid:zoobank.org:author:90A98A50-327E-4648-9DCE-75709C7A2472 6 urn:lsid:zoobank.org:author:1EB6DE00-9E91-407C-B7C4-34F31F29FD88 7 urn:lsid:zoobank.org:author:6D3AC760-77F2-4CFA-B5C7-665CB07F4CEB 8 urn:lsid:zoobank.org:author:48E53CF3-71C8-403C-BECD-10B20B3C15B4 Abstract. The study of the Portuguese marine ichthyofauna has a long historical tradition, rooted back in the 18th Century. Here we present an annotated checklist of the marine fishes from Portuguese waters, including the area encompassed by the proposed extension of the Portuguese continental shelf and the Economic Exclusive Zone (EEZ). The list is based on historical literature records and taxon occurrence data obtained from natural history collections, together with new revisions and occurrences. -
Fish Have No Feet Free
FREE FISH HAVE NO FEET PDF JГіn Kalman StefГЎnsson,Philip Roughton | 384 pages | 25 Aug 2016 | Quercus Publishing | 9780857054418 | English | London, United Kingdom ‘Fish Have No Feet’ by Jón Kalman Stefánsson (Review) – Tony's Reading List Powerful and sparkling, it is the backdrop and life-force for three generations of a one-time fishing family as they fall in and Fish Have No Feet of love. The barren blackness Fish Have No Feet the lava-covered land is offset by the untouchable bounty of the water that surrounds it, a striking picture of an almost Fish Have No Feet place. Nora Mahony. Sat, Oct 15,First published: Sat, Oct 15, More from The Irish Times Books. TV, Radio, Web. Sponsored Affordable homecare? Employers can ease employee concerns by prioritising their wellbeing. Think cloud when you think digital transformation. Subscriber Only. Realist versus sceptic: Two takes on the climate crisis. The Book Club Weekly See a sample. Sign up to the Irish Times books newsletter for features, podcasts and more. Sign up. Fighting Words Roddy Doyle introduces head-turning young Irish writing. Most Read in Culture. Short stories. The Cage, a short story by Tony Wright. Viscera, a new short story by Dearbhaile Houston. Book reviews. War: A wide-ranging, readable history of armed conflict. New poetry. Poetry: The Flourishing Shrub. Women writers Putting Irish women writers back in the picture. Brought to Book. Sign In. Don't have an account? Forgot Password? Not an Irish Times subscriber? Fish Have No Feet | Book reviews | RGfE One of the major focuses of the novel is on relationships. -
New Zealand Fishes a Field Guide to Common Species Caught by Bottom, Midwater, and Surface Fishing Cover Photos: Top – Kingfish (Seriola Lalandi), Malcolm Francis
New Zealand fishes A field guide to common species caught by bottom, midwater, and surface fishing Cover photos: Top – Kingfish (Seriola lalandi), Malcolm Francis. Top left – Snapper (Chrysophrys auratus), Malcolm Francis. Centre – Catch of hoki (Macruronus novaezelandiae), Neil Bagley (NIWA). Bottom left – Jack mackerel (Trachurus sp.), Malcolm Francis. Bottom – Orange roughy (Hoplostethus atlanticus), NIWA. New Zealand fishes A field guide to common species caught by bottom, midwater, and surface fishing New Zealand Aquatic Environment and Biodiversity Report No: 208 Prepared for Fisheries New Zealand by P. J. McMillan M. P. Francis G. D. James L. J. Paul P. Marriott E. J. Mackay B. A. Wood D. W. Stevens L. H. Griggs S. J. Baird C. D. Roberts‡ A. L. Stewart‡ C. D. Struthers‡ J. E. Robbins NIWA, Private Bag 14901, Wellington 6241 ‡ Museum of New Zealand Te Papa Tongarewa, PO Box 467, Wellington, 6011Wellington ISSN 1176-9440 (print) ISSN 1179-6480 (online) ISBN 978-1-98-859425-5 (print) ISBN 978-1-98-859426-2 (online) 2019 Disclaimer While every effort was made to ensure the information in this publication is accurate, Fisheries New Zealand does not accept any responsibility or liability for error of fact, omission, interpretation or opinion that may be present, nor for the consequences of any decisions based on this information. Requests for further copies should be directed to: Publications Logistics Officer Ministry for Primary Industries PO Box 2526 WELLINGTON 6140 Email: [email protected] Telephone: 0800 00 83 33 Facsimile: 04-894 0300 This publication is also available on the Ministry for Primary Industries website at http://www.mpi.govt.nz/news-and-resources/publications/ A higher resolution (larger) PDF of this guide is also available by application to: [email protected] Citation: McMillan, P.J.; Francis, M.P.; James, G.D.; Paul, L.J.; Marriott, P.; Mackay, E.; Wood, B.A.; Stevens, D.W.; Griggs, L.H.; Baird, S.J.; Roberts, C.D.; Stewart, A.L.; Struthers, C.D.; Robbins, J.E. -
Full Article
International Journal of Global Science Research ISSN: 2348-8344 (Online) Vol. 6, Issue. 1, April 2019, pp. 946-952 DOI: 10.26540/ijgsr.v6.i1.2019.122 Available Online at www.ijgsr.com © Copyright 2014 | ijgsr.com | All Rights Reserved Mini Review Light producing organs of fishes Leena Lakhani Department of Zoology, Government Girls P.G. College, Ujjain, Madhya Pradesh, India Email: [email protected] Received: 28/03/2019 Revised: 07/04/2019 Accepted: 13/04/2019 Abstract Light produced by living relationship, Luciferase, Luciferin, organisms is known as Bioluminescence. Communication, Attraction, Predators. The light produced by luminescent organs in fishes, depends on luminescent bacteria INTRODUCTION: living on the fish in a symbiotic Bioluminescence is the production and relationship in special cells. However emission of light by a living organism. It is some fishes do produce a chemical that a form of chemiluminescence. reacts with water to produce light. The Bioluminescence occurs widely in bacterial light usually produced as a result marine vertebrates and invertebrates, as of an enzyme luciferase mediated well as in some fungi, microorganisms oxidation reaction in which a molecule including some bioluminescent luciferin changes its shape and emits a bacteria and terrestrial invertebrates such single photon of light in the process. The as fireflies. In some animals, the light is luciferin molecule is a complex molecule produced by symbiotic organisms such and can later be returned to its original as Vibrio bacteria (Randall and Anthony shape through a reduction reaction during 1997). which it gains an amount of energy equivalent to the single photon of light The uses of bioluminescence by animals and fish can control the amount of light include counter illumination camouflage, emitted by controlling the blood flow, and mimicry of other animals, for example to hence the oxygen supply, to the cells lure prey, and signaling to other containing the bacteria. -
Interactions Between Organisms . and Environment
INTERACTIONS BETWEEN ORGANISMS . AND ENVIRONMENT 2·1 FUNCTIONAL RELATIONSHIPS An understanding of the relationships between an organism and its environment can be attained only when the environmental factors that can be experienced by the organism are considered. This is difficult because it is first necessary for the ecologist to have some knowledge of the neurological and physiological detection abilities of the organism. Sound, for example, should be measured with an instrument that responds to sound energy in the same way that the organism being studied does. Snow depths should be measured in a manner that reflects their effect on the animal. If six inches of snow has no more effect on an animal than three inches, a distinction between the two depths is meaningless. Six inches is not twice three inches in terms of its effect on the animal! Lower animals differ from man in their response to environmental stimuli. Color vision, for example, is characteristic of man, monkeys, apes, most birds, some domesticated animals, squirrels, and, undoubtedly, others. Deer and other wild ungulates probably detect only shades of grey. Until definite data are ob tained on the nature of color vision in an animal, any measurement based on color distinctions could be misleading. Infrared energy given off by any object warmer than absolute zero (-273°C) is detected by thermal receptors on some animals. Ticks are sensitive to infrared radiation, and pit vipers detect warm prey with thermal receptors located on the anterior dorsal portion of the skull. Man can detect different levels of infrared radiation with receptors on the skin, but they are not directional nor are they as sensitive as those of ticks and vipers. -
Ecological Characterization of Bioluminescence in Mangrove Lagoon, Salt River Bay, St. Croix, USVI
Ecological Characterization of Bioluminescence in Mangrove Lagoon, Salt River Bay, St. Croix, USVI James L. Pinckney (PI)* Dianne I. Greenfield Claudia Benitez-Nelson Richard Long Michelle Zimberlin University of South Carolina Chad S. Lane Paula Reidhaar Carmelo Tomas University of North Carolina - Wilmington Bernard Castillo Kynoch Reale-Munroe Marcia Taylor University of the Virgin Islands David Goldstein Zandy Hillis-Starr National Park Service, Salt River Bay NHP & EP 01 January 2013 – 31 December 2013 Duration: 1 year * Contact Information Marine Science Program and Department of Biological Sciences University of South Carolina Columbia, SC 29208 (803) 777-7133 phone (803) 777-4002 fax [email protected] email 1 TABLE OF CONTENTS INTRODUCTION ............................................................................................................................................... 4 BACKGROUND: BIOLUMINESCENT DINOFLAGELLATES IN CARIBBEAN WATERS ............................................... 9 PROJECT OBJECTIVES ..................................................................................................................................... 19 OBJECTIVE I. CONFIRM THE IDENTIY OF THE BIOLUMINESCENT DINOFLAGELLATE(S) AND DOMINANT PHYTOPLANKTON SPECIES IN MANGROVE LAGOON ........................................................................ 22 OBJECTIVE II. COLLECT MEASUREMENTS OF BASIC WATER QUALITY PARAMETERS (E.G., TEMPERATURE, SALINITY, DISSOLVED O2, TURBIDITY, PH, IRRADIANCE, DISSOLVED NUTRIENTS) FOR CORRELATION WITH PHYTOPLANKTON -
Determining the Depth Limit of Bioluminescent Sources in Scattering Media
bioRxiv preprint doi: https://doi.org/10.1101/2020.04.21.044982; this version posted April 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Determining the Depth Limit of Bioluminescent Sources in Scattering Media. Ankit Raghuram1,*, Fan Ye1, Jesse K. Adams1,2, Nathan Shaner3, Jacob T. Robinson1,2,4,5, Ashok Veeraraghavan1,2,6 1 Department of Electrical and Computer Engineering, Rice University, Houston, TX 77005, USA 2 Applied Physics Program, Rice University, Houston, TX 77005, USA 3 Department of Neurosciences, University of California San Diego, La Jolla, CA 92093, USA 4 Department of Neuroscience, Baylor College of Medicine, Houston, TX 77030, USA 5 Department of Bioengineering, Rice University, Houston, TX 77005, USA 6 Department of Computer Science, Rice University, Houston TX 77005, USA * [email protected] Abstract Bioluminescence has several potential advantages compared to fluorescence microscopy for in vivo biological imaging. Because bioluminescence does not require excitation light, imaging can be performed for extended periods of time without phototoxicity or photobleaching, and optical systems can be smaller, simpler, and lighter. Eliminating the need for excitation light may also affect how deeply one can image in scattering biological tissue, but the imaging depth limits for bioluminescence have yet to be reported. Here, we perform a theoretical study of the depth limits of bioluminescence microscopy and find that cellular resolution imaging should be possible at a depth of 5-10 mean free paths (MFPs). This limit is deeper than the depth limit for confocal microscopy and slightly lower than the imaging limit expected for two-photon microscopy under similar conditions. -
Who Glows There? Bioluminescence of Fireflies, Mushrooms, and Jellyfish Detailed Project Description
Who Glows there? Bioluminescence of Fireflies, Mushrooms, and Jellyfish Glenna Smith Anthony Todd Background: Most people think of fireflies when it comes to bioluminescent or glow- in-the-dark organisms, but many other organisms use bioluminescence as well to communicate, ward off predators, or attract their meal. On land and in fresh water, it is fairly rare with only a handful of bioluminescent mushrooms and insects (not including the recently developed abundance of transgenic glowing organisms like tobacco or rabbits). In the ocean, however, and the deep sea in particular where it is the only source of light, bioluminescence is used by a multitude of creatures: fish, squid, jellyfish, sponges, algae. We propose construction of a small exhibit which will teach children about bioluminescence and allow them to ‘draw’ the bioluminescence onto glow-in-the- dark cutouts of the organisms using fiber optic ‘pens’. This exhibit could be positioned in SciTech near the “shadowbox”. Goals: Teach children about the utility of bioluminescence by various organisms (it isn’t just for show!). Children would learn how creatures communicate with and relate to each other using bioluminescence, and how bioluminescence is particularly useful in their environment (counterillumination camouflage). Target Museum: SciTech Target Audience: Grades K-10 (benchmarks addressed in appendix 1) Big Idea: Fireflies, jellyfish, and other organisms are using bioluminescence to communicate, protect themselves, and feed themselves. Detailed Project Description: This demo will be a fun, hands-on small exhibit to showcase several bioluminescent organisms, and explain why glowing is useful to their survival. The exhibit would feature a series of pictures of glowing fish, mushrooms, insects, (the pictures could be backlit).