DOCSLIB.ORG

Community Ecology

Total Page：16

File Type：pdf, Size：1020Kb

Download full-text PDF Read full-text
Community Ecology Schueller 509: Lecture 12 Community ecology 1. The birds of Guam – e.g. of community interactions 2. What is a community? 3. What can we measure about whole communities? An ecology mystery story If birds on Guam are declining due to… • hunting, then bird populations will be larger on military land where hunting is strictly prohibited. • habitat loss, then the amount of land cleared should be negatively correlated with bird numbers. • competition with introduced black drongo birds, then….prediction? • ……. come up with a different hypothesis and matching prediction! $3 million/yr Why not profitable hunting instead? (Worked for the passenger pigeon: “It was the demographic nightmare of overkill and impaired reproduction. If you’re killing a species far faster than they can reproduce, the end is a mathematical certainty.” http://www.audubon.org/magazine/may-june- 2014/why-passenger-pigeon-went-extinct) Community-wide effects of loss of birds Schueller 509: Lecture 12 Community ecology 1. The birds of Guam – e.g. of community interactions 2. What is a community? 3. What can we measure about whole communities? What is an ecological community? Community Ecology • Collection of populations of different species that occupy a given area. What is a community? e.g. Microbial community of one human “YOUR SKIN HARBORS whole swarming civilizations. Your lips are a zoo teeming with well- fed creatures. In your mouth lives a microbiome so dense —that if you decided to name one organism every second (You’re Barbara, You’re Bob, You’re Brenda), you’d likely need fifty lifetimes to name them all. When you climb out of bed in the morning, ten times more bacterial cells climb out of bed than do human cells. In your gut, coalitions of hundreds of different species compete for food in a dark, simmering biome alive with as many as 100 trillion microbes.…Ultimately, we aren’t individuals; we are big permeable societies.” From The New You, BY ANTHONY DOERR, Orion Magazine Display at the American Museum of Natural History (NYC) e.g. Plant microbial community Application: Invasive plant microbiome manipulation What is an ecological community? Community Ecology • Collection of populations of different species that occupy a given area. • Species may interact directly, indirectly Direct Interactions Schueller 509: Lecture 12 Community ecology 1. The birds of Guam – e.g. of community interactions 2. What is a community? 3. What can we measure about whole communities? What can we measure about a community? • Composition • Structure • Function Characteristics of a community • Composition = which organisms are there COMPOSITION Species list and counts of each: • Are certain species or groups (guilds, taxa) present or absent? • What is the relative abundance (proportion of total # individuals, biomass, or cover) of certain species? • Are certain species dominant/rare? • What is the diversity? COMPOSITION: Species diversity Which of these is the most diverse? COMPOSITION: Species diversity • Richness: How many species are present? • Evenness: Are they equally abundant? RICHNESS (S) A Diversity Index considers both! EVENNESS • Which spp. are dominant? • rare? • What is the richness? • Is evenness high or low? COMPOSITION: Species diversity Diversity Index • Shannon (or Shannon-Weiner) index • H = (pi)(log pi) • Where pi = ni / N = proportion of species • Also “Simpson's diversity index" (and many others) A Diversity Index considers both richness & evenness! Examples of communities. Why is Shannon- Wiener diversity index (H) so much lower in the second example? When would H=0? Upstream: Dexter Huron Downstream: Island Park Stream Quality Score (based on composition) Main Branch Tributary 36.2 60.3 Tu AM 38.9 57.2 Tu PM 54.5 Th AM 38.7 Th PM Stream Quality Score (based on composition) Upstream Downstream 68 58.5 58.4 58 55.1 46 How do we know if we have sampled all the species that are there? What can we measure about a community? • Composition – Presence of certain spp. – Relative abundance & dominance – Diversity (at different scales) • Species Richness (S) • Evenness – Similarity • Structure STRUCTURE Depends on how defined – may include: • Number of trophic levels • Layers or patchiness of vegetation • Physical structure created by living things STRUCTURE: Layers and Zones © 2012 Pearson Education, Inc. © 2012 Pearson Education, Inc. •Effect of sea urchins on structure of kelp forest community https://www.youtube.com/watch?v=D3W4OCnHyCs •Effect of agriculture on structure and composition Monoculture •Effect of agriculture on below ground structure • Relationship between structure (grass height) and composition (birds) Michigan State Extension publication Yvette et al. 2015. Response of avian diversity to habitat modification can be predicted from life-history traits and ecological attributes. Landscape Ecology; 30 (7): 1225 - Compared bird populations in cultivated mango orchards vs. natural habitats in South Africa. - 35 % fewer bird species in agriculture - "Mango orchards are missing the low level woody scrub found in natural vegetation and the birds missing from the orchards are exactly those that depend on this layer of vegetation.” - USE vegetation structure to improve biodiversity in agriculture! Permaculture structure? From: Gaia's Garden: A Guide to Home-Scale Permaculture / by Toby Hemenway Should dead wood be removed from forests? Snags, logs, and Coarse Woody Debris (CWD) What can we measure about a community? • Composition – Presence of certain spp. – Relative abundance & dominance – Diversity… – Similarity • Structure – Height, growth forms, layers, zones, arrangement, etc. • Function – Interactions & processes – more later Which community has greater species richness? Which community has greater species evenness? Which community has greater species diversity? What is an ecological community? Community Ecology • Collection of populations of different species that occupy a given area. • Species may interact directly, indirectly • Has measurable composition, structure & function Direct Interactions 3 1 2 http://www.haehnlesanctuary.org/cranecountfive.html Self assess • What could you measure (make a list) about any two communities we have been to in lab? How would they compare (be specific)? • What community-levels measures could you use to assess the difference between a tall grass prairie and an agricultural field of soybeans? • Name 3 examples fo what we might call an ecological “community” • How is dead wood a part of a community? • What can you measure about a community that you cannot about a population? • How can a community have high richness but low diversity? • What information do you need to obtain a diversity index? • Give 3 examples of community structure measures. • What are the main types of species interactions we might see between species?.
Load more

Recommended publications
  • Biogeography, Community Structure and Biological Habitat Types of Subtidal Reefs on the South Island West Coast, New Zealand
    Biogeography, community structure and biological habitat types of subtidal reefs on the South Island West Coast, New Zealand SCIENCE FOR CONSERVATION 281 Biogeography, community structure and biological habitat types of subtidal reefs on the South Island West Coast, New Zealand Nick T. Shears SCIENCE FOR CONSERVATION 281 Published by Science & Technical Publishing Department of Conservation PO Box 10420, The Terrace Wellington 6143, New Zealand Cover: Shallow mixed turfing algal assemblage near Moeraki River, South Westland (2 m depth). Dominant species include Plocamium spp. (yellow-red), Echinothamnium sp. (dark brown), Lophurella hookeriana (green), and Glossophora kunthii (top right). Photo: N.T. Shears Science for Conservation is a scientific monograph series presenting research funded by New Zealand Department of Conservation (DOC). Manuscripts are internally and externally peer-reviewed; resulting publications are considered part of the formal international scientific literature. Individual copies are printed, and are also available from the departmental website in pdf form. Titles are listed in our catalogue on the website, refer www.doc.govt.nz under Publications, then Science & technical. © Copyright December 2007, New Zealand Department of Conservation ISSN 1173–2946 (hardcopy) ISSN 1177–9241 (web PDF) ISBN 978–0–478–14354–6 (hardcopy) ISBN 978–0–478–14355–3 (web PDF) This report was prepared for publication by Science & Technical Publishing; editing and layout by Lynette Clelland. Publication was approved by the Chief Scientist (Research, Development & Improvement Division), Department of Conservation, Wellington, New Zealand. In the interest of forest conservation, we support paperless electronic publishing. When printing, recycled paper is used wherever possible. CONTENTS Abstract 5 1. Introduction 6 2.
    [Show full text]
  • Genetic Methods for Estimating the Effective Size of Cetacean Populations
    Genetic Methods for Estimating the Effective Size of Cetacean Populations Robin S. Waples Northwest Fisheries Center, National Marine Fisheries Service, 2725 Montlake Boulevard East, Seattle, Washington 98112, USA ABSTRACT Some indirect (genetic) methods for estimating effective population size (N,) are evaluated for their suitability in studyingcetacean populations. The methodscan be grouped into those that (1) estimate current N,, (2) estimate long-term N, and (3) provide information about recent genetic bottlenecks. The methods that estimate current effective size are best suited for the analysis of small populations. and nonrandom sampling and population subdivision are probably the most serious sources of potential bias. Methods that estimate long-term N, are best suited to the analysis of large populations or entire species, may be more strongly influenced by natural selection and depend on accurate estimates of mutation or DNA base substitution rates. Precision of the estimates of N, is likely to be a limiting factor in many applications of the indirect methods. Keywords: genetics; assessment: cetaceans - general: evolution. INTRODUCTION Population size is one of the most important factors that determine the rate of various evolutionary processes, and it appears as a parameter in many of the fundamental equations of population genetics. However, knowledge merely of the total number of individuals (N) in a population is not sufficient for an accurate description of these evolutionary processes. Because of the influence of demographic parameters, two populations of the same total size may experience very different rates of genetic change. Wright (1931; 1938) developed the concept of effective population size (N,) as a way of summarising relevant demographic information so that one can predict the evolutionary consequences of finite population size (see Fig.
    [Show full text]
  • Ecological Principles and Function of Natural Ecosystems by Professor Michel RICARD
    Intensive Programme on Education for sustainable development in Protected Areas Amfissa, Greece, July 2014 ------------------------------------------------------------------------ Ecological principles and function of natural ecosystems By Professor Michel RICARD Summary 1. Hierarchy of living world 2. What is Ecology 3. The Biosphere - Lithosphere - Hydrosphere - Atmosphere 4. What is an ecosystem - Ecozone - Biome - Ecosystem - Ecological community - Habitat/biotope - Ecotone - Niche 5. Biological classification 6. Ecosystem processes - Radiation: heat, temperature and light - Primary production - Secondary production - Food web and trophic levels - Trophic cascade and ecology flow 7. Population ecology and population dynamics 8. Disturbance and resilience - Human impacts on resilience 9. Nutrient cycle, decomposition and mineralization - Nutrient cycle - Decomposition 10. Ecological amplitude 11. Ecology, environmental influences, biological interactions 12. Biodiversity 13. Environmental degradation - Water resources degradation - Climate change - Nutrient pollution - Eutrophication - Other examples of environmental degradation M. Ricard: Summer courses, Amfissa July 2014 1 1. Hierarchy of living world The larger objective of ecology is to understand the nature of environmental influences on individual organisms, populations, communities and ultimately at the level of the biosphere. If ecologists can achieve an understanding of these relationships, they will be well placed to contribute to the development of systems by which humans
    [Show full text]
  • Islands in the Stream 2002: Exploring Underwater Oases
    Islands in the Stream 2002: Exploring Underwater Oases NOAA: Office of Ocean Exploration Mission Three: SUMMARY Discovery of New Resources with Pharmaceutical Potential (Pharmaceutical Discovery) Exploration of Vision and Bioluminescence in Deep-sea Benthos (Vision and Bioluminescence) Microscopic view of a Pachastrellidae sponge (front) and an example of benthic bioluminescence (back). August 16 - August 31, 2002 Shirley Pomponi, Co-Chief Scientist Tammy Frank, Co-Chief Scientist John Reed, Co-Chief Scientist Edie Widder, Co-Chief Scientist Pharmaceutical Discovery Vision and Bioluminescence Harbor Branch Oceanographic Institution Harbor Branch Oceanographic Institution ABSTRACT Harbor Branch Oceanographic Institution (HBOI) scientists continued their cutting-edge exploration searching for untapped sources of new drugs, examining the visual physiology of deep-sea benthos and characterizing the habitat in the South Atlantic Bight aboard the R/V Seaward Johnson from August 16-31, 2002. Over a half-dozen new species of sponges were recorded, which may provide scientists with information leading to the development of compounds used to study, treat, or diagnose human diseases. In addition, wondrous examples of bioluminescence and emission spectra were recorded, providing scientists with more data to help them understand how benthic organisms visualize their environment. New and creative Table of Contents ways to outreach and educate the public also Key Findings and Outcomes................................2 Rationale and Objectives ....................................4
    [Show full text]
  • Interactions Between Organisms . and Environment
    INTERACTIONS BETWEEN ORGANISMS . AND ENVIRONMENT 2·1 FUNCTIONAL RELATIONSHIPS An understanding of the relationships between an organism and its environment can be attained only when the environmental factors that can be experienced by the organism are considered. This is difficult because it is first necessary for the ecologist to have some knowledge of the neurological and physiological detection abilities of the organism. Sound, for example, should be measured with an instrument that responds to sound energy in the same way that the organism being studied does. Snow depths should be measured in a manner that reflects their effect on the animal. If six inches of snow has no more effect on an animal than three inches, a distinction between the two depths is meaningless. Six inches is not twice three inches in terms of its effect on the animal! Lower animals differ from man in their response to environmental stimuli. Color vision, for example, is characteristic of man, monkeys, apes, most birds, some domesticated animals, squirrels, and, undoubtedly, others. Deer and other wild ungulates probably detect only shades of grey. Until definite data are ob­ tained on the nature of color vision in an animal, any measurement based on color distinctions could be misleading. Infrared energy given off by any object warmer than absolute zero (-273°C) is detected by thermal receptors on some animals. Ticks are sensitive to infrared radiation, and pit vipers detect warm prey with thermal receptors located on the anterior dorsal portion of the skull. Man can detect different levels of infrared radiation with receptors on the skin, but they are not directional nor are they as sensitive as those of ticks and vipers.
    [Show full text]
  • Can More K-Selected Species Be Better Invaders?
    Diversity and Distributions, (Diversity Distrib.) (2007) 13, 535–543 Blackwell Publishing Ltd BIODIVERSITY Can more K-selected species be better RESEARCH invaders? A case study of fruit flies in La Réunion Pierre-François Duyck1*, Patrice David2 and Serge Quilici1 1UMR 53 Ӷ Peuplements Végétaux et ABSTRACT Bio-agresseurs en Milieu Tropical ӷ CIRAD Invasive species are often said to be r-selected. However, invaders must sometimes Pôle de Protection des Plantes (3P), 7 chemin de l’IRAT, 97410 St Pierre, La Réunion, France, compete with related resident species. In this case invaders should present combina- 2UMR 5175, CNRS Centre d’Ecologie tions of life-history traits that give them higher competitive ability than residents, Fonctionnelle et Evolutive (CEFE), 1919 route de even at the expense of lower colonization ability. We test this prediction by compar- Mende, 34293 Montpellier Cedex, France ing life-history traits among four fruit fly species, one endemic and three successive invaders, in La Réunion Island. Recent invaders tend to produce fewer, but larger, juveniles, delay the onset but increase the duration of reproduction, survive longer, and senesce more slowly than earlier ones. These traits are associated with higher ranks in a competitive hierarchy established in a previous study. However, the endemic species, now nearly extinct in the island, is inferior to the other three with respect to both competition and colonization traits, violating the trade-off assumption. Our results overall suggest that the key traits for invasion in this system were those that *Correspondence: Pierre-François Duyck, favoured competition rather than colonization. CIRAD 3P, 7, chemin de l’IRAT, 97410, Keywords St Pierre, La Réunion Island, France.
    [Show full text]
  • Habitat Evaluation: Guidance for the Review of Environmental Impact Assessment Documents
    HABITAT EVALUATION: GUIDANCE FOR THE REVIEW OF ENVIRONMENTAL IMPACT ASSESSMENT DOCUMENTS EPA Contract No. 68-C0-0070 work Assignments B-21, 1-12 January 1993 Submitted to: Jim Serfis U.S. Environmental Protection Agency Office of Federal Activities 401 M Street, SW Washington, DC 20460 Submitted by: Mark Southerland Dynamac Corporation The Dynamac Building 2275 Research Boulevard Rockville, MD 20850 CONTENTS Page INTRODUCTION ... ...... .... ... ................................................. 1 Habitat Conservation .......................................... 2 Habitat Evaluation Methodology ................................... 2 Habitats of Concern ........................................... 3 Definition of Habitat ..................................... 4 General Habitat Types .................................... 5 Values and Services of Habitats ................................... 5 Species Values ......................................... 5 Biological diversity ...................................... 6 Ecosystem Services.. .................................... 7 Activities Impacting Habitats ..................................... 8 Land Conversion ....................................... 9 Land Conversion to Industrial and Residential Uses ............. 9 Land Conversion to Agricultural Uses ...................... 10 Land Conversion to Transportation Uses .................... 10 Timber Harvesting ...................................... 11 Grazing ............................................. 12 Mining .............................................
    [Show full text]
  • National Wildlife Federation's Community Wildlife Habitat
    National Wildlife Federation’s Community Wildlife Habitat Certification Requirements To achieve certification through the National Wildlife Federation’s Community Wildlife Habitat program, you must create or restore wildlife habitat in your community and do education and outreach. First, a certain number of homes, schools and common areas must become National Wildlife Federation Certified Wildlife Habitats by providing the four basic elements that all wildlife need: food, water, cover and places to raise young. The NWF Certified Wildlife Habitat program also requires sustainable gardening practices such as using rain barrels, reducing water usage, removing invasive plants, using native plants and eliminating pesticides. These requirements are based on population – see chart below. Second, communities earn education and outreach points through a flexible checklist that includes educating citizens at community events, hosting a native plant sale, organizing a stream clean up, bringing new partners to the effort and hosting workshops – see pages 2 and 3. Property Certification Requirements: Minimum Habitat Sliding Scale Based on Activity / Type of Certification Points Certification Points Population Size For each home certified, including townhomes and apartments 1 20 500 or Less For each common area certified, including public parks, HOA common 40 501-1,000 areas, businesses, places of worship, farms, universities and municipal 3 100 1,001-5000 buildings 150 5,001-10,000 For each school certified as an NWF Schoolyard Habitat - Pre-K - 12 or 175 10,001-15,000 5 nature center 200 15,001-20,000 225 20,001-25,000 250 25,001-50,000 VERIFICATION: Each home or common area must be certified within 15 300 50,001-100,000 years of a community's registration date to count for points.
    [Show full text]
  • Integrating Community and Ecosystem-Based Approaches in Climate
    Integrating Community and Ecosystem-Based Approaches in Climate Change Adaptation i Responses This paper is the result of extensive discussions led by adaptation professionals coming from different backgrounds and facilitated by the Ecosystem and Livelihoods Adaptation Network (ELAN).ii ELAN is an innovative alliance between two conservation organisations (International Union for the Conservation of Nature [IUCN] and WWF) and two development organisations (CARE International and the International Institute for Environment and Development [IIED]). The objective of ELAN is to establish a global network to develop, evaluate, synthesize and share successful strategies for adapting to climate change, build capacity for such strategies to be assessed and implemented at national and sub-national levels, and advance policies and knowledge sharing platforms that will facilitate the scaling up of effective strategies. Two emerging approaches to adaptation have gained currency over the past few years, namely Community-based Adaptation (CBA) and Ecosystem-based Adaptation (EBA). Each has its specific emphasis, the first on empowering local communities to reduce their vulnerabilities, and the latter on harnessing the management of ecosystems as a means to provide goods and services in the face of climate change. In this paper, ELAN argues for a more truly “integrated approach” to adaptation that addresses and seeks to reconcile differences between CBA and EBA. ELAN has developed a conceptual framework for an approach to adaptation, which empowers
    [Show full text]
  • Effective Size of Populations with Heritable Variation in Fitness
    Heredity (2002) 89, 413–416 2002 Nature Publishing Group All rights reserved 0018-067X/02 $25.00 www.nature.com/hdy SHORT REVIEW Effective size of populations with heritable variation in fitness T Nomura Department of Biotechnology, Faculty of Engineering, Kyoto Sangyo University, Kyoto 603–8555, Japan The effective size of monogamous populations with heritable zygotes are produced by random union of gametes, each variation in fitness is formulated, and the expression from conceptual male and female gametic pools. A con- obtained is compared with a published equation. It is shown venient equation for practical use is proposed, and the appli- that the published equation for dioecious populations is inap- cation is illustrated with the estimation of the effective size propriate for most animal and human populations, because of a rural human community in Japan. the derivation is implicitly based on the assumption that Heredity (2002) 89, 413–416. doi:10.1038/sj.hdy.6800169 Keywords: effective population size; random genetic drift; fitness; heritability; human population; animal population Introduction situations have been developed (Santiago and Caballero, 1995; Nomura, 1996, 1997; Wang, 1998; Bijma et al, 2000, The effective size of a population is a parameter central 2001). Only one extension to directional selection on fit- to understanding evolution in small populations, because ness was given by Nei and Murata (1966). Based on the the magnitude of this parameter determines the genetic approach of Robertson (1961), they worked out an equ- effects of both inbreeding and genetic drift (Falconer, ation for monoecious populations. They also extended 1989; Caballero, 1994). This parameter is also important their derivation to dioecious populations.
    [Show full text]
  • A Guide to Community-Based Habitat Restoration
    Why Restore? HABITAT DESTRUCTION AND DEGRADATION are among our most seri- ous environmental crises, causing species extinctions and threatening many remaining wildlife populations around the world. In California, f population growth and associated coastal development have caused In California, population the loss of over 90 percent of our wetlands. Although the passage of growth and associated environmental laws in the 1970s, including the California Coastal Act, coastal development have has helped to slow this decline, many remaining wetlands continue to caused the loss of over 90 be threatened by development and are degraded by poor water qual- percent of our wetlands. ity, invasive species, and other threats. In addition to making sure that f no more loss occurs, an important new challenge is to restore wetlands and other critical habitat wherever feasible. This guide describes how citizens can become involved in helping to improve and restore coastal wetlands and other coastal habitat in their communities. he california coastal commission’s community-Based t restoration and education program In 1972, the citizens of California passed Proposition 20, known as the “Save the Coast” initiative, which called for the formation of a statewide planning and regulatory agency named the California Coastal Zone Conservation Commission. Made permanent by the 1976 Coastal Act, and now known as the California Coastal Commission, the Commission has spent the past 30 years working to preserve and protect the resources of our 1,100 miles of coastline. The Commission’s Public Education Pro- gram complements the work of its regulatory and planning programs by empowering the public to become stewards of our coast and ocean and take environmentally positive action.
    [Show full text]
  • And K-Selection History
    bioRxiv preprint doi: https://doi.org/10.1101/2021.08.04.455033; this version posted August 5, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Robust bacterial co-occurence community structures are independent of r- and K-selection history Jakob Peder Pettersen1, Madeleine S. Gundersen1, and Eivind Almaas1,2,* 1Department of Biotechnology and Food Science, NTNU- Norwegian University of Science and Technology, Trondheim, Norway 2K.G. Jebsen Center for Genetic Epidemiology, Department of Public Health and General Practice, NTNU - Norwegian University of Science and Technology, Trondheim, Norway *Corresponding author: [email protected] ABSTRACT Selection for bacteria which are K-strategists instead of r-strategists has been shown to improve fish health and survival in aquaculture. We considered an experiment where microcosms were inoculated with natural seawater and the selection regime was switched from K-selection (by continuous feeding) to r-selection (by pulse feeding) and vice versa. We found the networks of significant co-occurrences to contain clusters of taxonomically related bacteria having positive associations. Comparing this with the time dynamics, we found that the clusters most likely were results of similar niche preferences of the involved bacteria. In particular, the distinction between r- or K-strategists was evident. Each selection regime seemed to give rise to a specific pattern, to which the community converges regardless of its prehistory. Furthermore, the results proved robust to parameter choices in the analysis, such as the filtering threshold, level of random noise, replacing absolute abundances with relative abundances, and the choice of similarity measure.
    [Show full text]