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Solanum Section Lycopersicon: Solanaceae)
Biological Journal of the Linnean Society, 2016, 117, 96–105. With 4 figures. Using genomic repeats for phylogenomics: a case study in wild tomatoes (Solanum section Lycopersicon: Solanaceae) 1,2 2,3 € 4 5 STEVEN DODSWORTH *, MARK W. CHASE , TIINA SARKINEN , SANDRA KNAPP and ANDREW R. LEITCH1 1School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London, E1 4NS, UK 2Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3DS, UK 3School of Plant Biology, The University of Western Australia, Crawley, WA, 6009, Australia 4Royal Botanic Garden, Edinburgh, 20A Inverleith Row, Edinburgh, EH3 5LR, UK 5Department of Life Sciences, Natural History Museum, Cromwell Road, London, SW7 5BD, UK Received 17 February 2015; revised 7 May 2015; accepted for publication 21 May 2015 High-throughput sequencing data have transformed molecular phylogenetics and a plethora of phylogenomic approaches are now readily available. Shotgun sequencing at low genome coverage is a common approach for isolating high-copy DNA, such as the plastid or mitochondrial genomes, and ribosomal DNA. These sequence data, however, are also rich in repetitive elements that are often discarded. Such data include a variety of repeats present throughout the nuclear genome in high copy number. It has recently been shown that the abundance of repetitive elements has phylogenetic signal and can be used as a continuous character to infer tree topologies. In the present study, we evaluate repetitive DNA data in tomatoes (Solanum section Lycopersicon)to explore how they perform at the inter- and intraspecific levels, utilizing the available data from the 100 Tomato Genome Sequencing Consortium. -
The 12Th Solanaceae Conference
SOL2015 would like to thank our sponsors: The 12th Solanaceae Conference The 12th Solanaceae Conference 1 The 12th Solanaceae Conference 2 CONTENTS Scientific Committee, Conference Chairs and Speakers ..................................... 4 Map of the Conference Site ............................................................................... 5 Social Events ..................................................................................................... 6 Program at a Glance .......................................................................................... 9 Scientific Program ............................................................................................. 10 Abstract (Monday, October 26th) Keynote lecture (KL‐1) ...................................................................................... 23 Session I – Plant Growth & Development ........................................................ 24 Session II – Biodiversity .................................................................................... 27 Session III – Molecular Breeding ...................................................................... 30 Session IV – Bioinformatics and SGN Workshop .............................................. 32 Abstract (Tuesday, October 27th) Keynote lecture (KL‐2) ...................................................................................... 34 Session V – Flower, Fruit and Tuber Biology .................................................... 35 Abstract (Wednesday, October 28th) Keynote lecture (KL‐3) -
How to Cite Complete Issue More Information About This Article
Ecología Aplicada ISSN: 1726-2216 ISSN: 1993-9507 [email protected] Universidad Nacional Agraria La Molina Perú Vilchez, Dioliza; Sotomayor, Diego; Zorrilla, Cinthya EX SITU CONSERVATION PRIORITIES FOR THE PERUVIAN WILD TOMATO SPECIES (Solanum L. SECT. Lycopersicum (MILL.) WETTST.) Ecología Aplicada, vol. 18, no. 2, 2019, July-, pp. 171-183 Universidad Nacional Agraria La Molina Perú DOI: https://doi.org/10.21704/rea.v18i2.1335 Available in: https://www.redalyc.org/articulo.oa?id=34162388007 How to cite Complete issue Scientific Information System Redalyc More information about this article Network of Scientific Journals from Latin America and the Caribbean, Spain and Journal's webpage in redalyc.org Portugal Project academic non-profit, developed under the open access initiative Ecología Aplicada, 18(2), 2019 Presentado: 10/09/2018 ISSN 1726-2216 Versión impresa / ISSN 1993-9507 Versión electrónica. Aceptado: 23/10/2019 Depósito legal 2002-5474 DOI: http://dx.doi.org/10.21704/rea.v18i2.1335 © Departamento Académico de Biología, Universidad Nacional Agraria La Molina, Lima – Perú. EX SITU CONSERVATION PRIORITIES FOR THE PERUVIAN WILD TOMATO SPECIES (Solanum L. SECT. Lycopersicum (MILL.) WETTST.) PRIORIDADES PARA LA CONSERVACIÓN EX SITU DE LAS ESPECIES SILVESTRES DE TOMATE DEL PERÚ (Solanum L. SECT. Lycopersicum (MILL.) WETTST.) Dioliza Vilchez1,2, Diego A. Sotomayor1,3 y Cinthya Zorrilla1,4 Abstract Tomato (Solanum lycopersicum) is a crop of global importance that has center of origin in Peru, with 11 species of wild relatives (CWR) occurring in the country. These CWR contain genetic material that could be used to improve currently cultivated species, and that is usually stored ex situ in germplasm banks. -
P. B. Kavi Kishor Manchikatla Venkat Rajam T. Pullaiah Editors
P. B. Kavi Kishor Manchikatla Venkat Rajam T. Pullaiah Editors Genetically Modified Crops Current Status, Prospects and Challenges Volume 2 Genetically Modified Crops P. B. Kavi Kishor • Manchikatla Venkat Rajam • T. Pullaiah Editors Genetically Modified Crops Current Status, Prospects and Challenges Volume 2 Editors P. B. Kavi Kishor Manchikatla Venkat Rajam Department of Biotechnology Department of Genetics Vignan’s Foundation for Science, University of Delhi South Campus Technology & Research New Delhi, India Guntur, Andhra Pradesh, India T. Pullaiah Department of Botany Sri Krishnadevaraya University Anantapur, Andhra Pradesh, India ISBN 978-981-15-5931-0 ISBN 978-981-15-5932-7 (eBook) https://doi.org/10.1007/978-981-15-5932-7 # Springer Nature Singapore Pte Ltd. 2021 This work is subject to copyright. All rights are reserved by the Publisher, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed. The use of general descriptive names, registered names, trademarks, service marks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. The publisher, the authors, and the editors are safe to assume that the advice and information in this book are believed to be true and accurate at the date of publication. Neither the publisher nor the authors or the editors give a warranty, expressed or implied, with respect to the material contained herein or for any errors or omissions that may have been made. -
Report of the Tomato Genetics Cooperative
Report of the Tomato Genetics Cooperative Volume 56 September 2006 Report of the Tomato Genetics Cooperative Number 56- September 2006 University of Florida Gulf Coast Research and Education Center 14625 CR 672 Wimauma, FL 33598 USA Foreword The Tomato Genetics Cooperative, initiated in 1951, is a group of researchers who share and interest in tomato genetics, and who have organized informally for the purpose of exchanging information, germplasm, and genetic stocks. The Report of the Tomato Genetics Cooperative is published annually and contains reports of work in progress by members, announcements and updates on linkage maps and materials available. The research reports include work on diverse topics such as new traits or mutants isolated, new cultivars or germplasm developed, interspecific transfer of traits, studies of gene function or control or tissue culture. Relevant work on the Solanaceous species is encouraged as well. Paid memberships currently stand at approximately 101 from 19 countries. Requests for membership (per year) US$15 to addresses in the US and US$20 if shipped to addresses outside of the United States should be sent to Dr. J.W. Scott, [email protected]. Please send only checks or money orders. Make checks payable to the University of Florida. We are sorry but we are NOT able to accept cash or credit cards. Cover. The woodcut of “Poma aurea” or “Goldapffel” (Solanum lycopersicum) from Matthioli (1586), a German edition edited not by Matthioli, but by the German herbalist Joachim Camerarius. This copy has been hand-colored, but the flowers were left unpainted, presumably because their color was not known. -
Evaluation of Wild Tomato Accessions (Solanum Spp.)
Evaluation of wild tomato accessions (Solanum spp.) for resistance to two-spotted spider mite (Tetranychus urticae Koch) based on trichome type and acylsugar content Mohamed Rakha, Ndeye Bouba, Srinivasan Ramasamy, Jean-Luc Regnard, Peter Hanson To cite this version: Mohamed Rakha, Ndeye Bouba, Srinivasan Ramasamy, Jean-Luc Regnard, Peter Hanson. Evaluation of wild tomato accessions (Solanum spp.) for resistance to two-spotted spider mite (Tetranychus urticae Koch) based on trichome type and acylsugar content. Genetic Resources and Crop Evolution, Springer Verlag, 2017, 64 (5), pp.1011-1022. 10.1007/s10722-016-0421-0. hal-01607841 HAL Id: hal-01607841 https://hal.archives-ouvertes.fr/hal-01607841 Submitted on 26 May 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License Genet Resour Crop Evol (2017) 64:1011–1022 DOI 10.1007/s10722-016-0421-0 RESEARCH ARTICLE Evaluation of wild tomato accessions (Solanum spp.) for resistance to two-spotted spider mite (Tetranychus urticae Koch) based on trichome type and acylsugar content Mohamed Rakha . Ndeye Bouba . Srinivasan Ramasamy . Jean-Luc Regnard . Peter Hanson Received: 17 February 2016 / Accepted: 13 June 2016 / Published online: 29 June 2016 Ó The Author(s) 2016. -
Chapter 9. Solanum Sect. Lycopersicon
Chittaranjan Kole Editor Wild Crop Relatives: Genomic and Breeding Resources Vegetables [email protected] Editor Prof. Chittaranjan Kole Director of Research Institute of Nutraceutical Research Clemson University 109 Jordan Hall Clemson, SC 29634 [email protected] ISBN 978-3-642-20449-4 e-ISBN 978-3-642-20450-0 DOI 10.1007/978-3-642-20450-0 Springer Heidelberg Dordrecht London New York Library of Congress Control Number: 2011922649 # Springer-Verlag Berlin Heidelberg 2011 This work is subject to copyright. All rights are reserved, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilm or in any other way, and storage in data banks. Duplication of this publication or parts thereof is permitted only under the provisions of the German Copyright Law of September 9, 1965, in its current version, and permission for use must always be obtained from Springer. Violations are liable to prosecution under the German Copyright Law. The use of general descriptive names, registered names, trademarks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. Cover design: deblik, Berlin Printed on acid-free paper Springer is part of Springer Science+Business Media (www.springer.com) [email protected] Chapter 9 Solanum sect. Lycopersicon Silvana Grandillo, Roger Chetelat, Sandra Knapp, David Spooner, Iris Peralta, Maria Cammareri, Olga Perez, Pasquale Termolino, Pasquale Tripodi, Maria Luisa Chiusano, Maria Raffaella Ercolano, Luigi Frusciante, Luigi Monti, and Domenico Pignone 9.1 Introduction such as their bright yellow flowers and pinnatifid, non-prickly leaves. -
The Systematics and Genetics of Tomatoes on the Galápagos Islands (Solanum, Solanaceae)
The systematics and genetics of tomatoes on the Galápagos Islands (Solanum, Solanaceae) By Sarah Catherine Darwin A thesis submitted for the degree of Doctor of Philosophy at University College London August 2009 Department of Genetics, Evolution and Environment University College London 1 Declaration I, Sarah Darwin confirm that the work presented in this thesis is my own. Where information has been derived from other sources, I confirm that this has been indicated in the thesis. Chapter 2 is a reprint from a paper on the taxonomy of the tomatoes of the Galápagos Islands published in Systematics and Biodiversity in 2003. This was a collaborative project, and the authors were Sarah Darwin, Sandra Knapp and Iris Peralta. I was the lead author as this was part of my thesis work, and I carried out most of the work towards the paper. Below I list the contributions of each author for Chapter 2. Morphological analysis I undertook the analysis of the herbarium specimens, with particular guidance from Sandy Knapp and Iris Peralta for the S. lycopersicum and S. pimpinellifolium collected from the mainland of South America. Morphometrics Morphological characters were selected by all of us based on my experience from fieldwork, Dr Peralta’s experience from greenhouse grown accessions and Dr Knapp’s experience from herbarium specimens. I undertook the measurement of the living plants and herbarium specimens with the assistance/guidance of Drs Peralta and Knapp Statistics I and Dr Peralta undertook the PCA, with advice from Drs Claudio Galmarini and Clive Moncrieff. Taxonomic treatment Dr Knapp and Dr Norman Robson wrote the Latin for the taxonomic treatment. -
Characterization of RIN Isoforms and Their Expression in Tomato Fruit Ripening
cells Article Characterization of RIN Isoforms and Their Expression in Tomato Fruit Ripening Maria A. Slugina, Gleb I. Efremov, Anna V. Shchennikova * and Elena Z. Kochieva Institute of Bioengineering, Research Center of Biotechnology, Russian Academy of Sciences, Leninsky Ave. 33, bld. 2, 119071 Moscow, Russia; [email protected] (M.A.S.); [email protected] (G.I.E.); [email protected] (E.Z.K.) * Correspondence: [email protected]; Tel.: +7-499-1356219 Abstract: Ripening of tomato fleshy fruit is coordinated by transcription factor RIN, which triggers ethylene and carotenoid biosynthesis, sugar accumulation, and cell wall modifications. In this study, we identified and characterized complete sequences of the RIN chromosomal locus in two tomato Solanum lycopersicum cultivars, its rin/RIN genotype, and three wild green-fruited species differing in fruit color and composition. The results reveal that S. lycopersicum cultivars and some wild species (S. pennellii, S. habrochaites, and S. huaylasense) had a 30-splicing site enabling the transcription of RIN1i and RIN2i isoforms. The other wild species (S. arcanum, S. chmielewskii, S. neorickii, and S. peruvianum) had a 30-splicing site only for RIN2i, which was consistent with RIN1i and RIN2i expression patterns. The genotype rin/RIN, which had an extended 30-terminal deletion in the rin allele, mainly expressed the chimeric RIN–MC transcript, which was also found in cultivars (RIN/RIN). The RIN1, but not RIN2, protein is able to induce the transcription of the reporter gene in the Y2H system, which positively correlated with the transcription profile of RIN1i and RIN target genes. We suggest that Citation: Slugina, M.A.; Efremov, during fruit ripening, RIN1 activates ripening-related genes, whereas RIN2 and RIN–MC act as G.I.; Shchennikova, A.V.; Kochieva, modulators by competing for RIN-binding sites in gene promoters, which should be confirmed by E.Z. -
The Status of the Endemic Flora of Galapagos: the Number of Threatened Species Is Increasing Alan Tye Charles Darwin Foundation
BIODIVERSITY AND BIOPHYSICAL RESOURSES The status of the endemic flora of Galapagos: the number of threatened species is increasing Alan Tye Charles Darwin Foundation The endemic species of Galapagos are of the greatest Results conservation interest because their future depends entirely on their continued existence in the islands. A The new evaluations cover 180 species, compared complete evaluation of the threat status of the endemic with 175 in 2002, eight of which were Not Evaluated vascular plants (flowering plants and ferns) of (IUCN category NE) 1. Of the 180 evaluated in 2006, Galapagos was published in the last Galapagos nine species were placed in the IUCN category Data Report 1. A re-evaluation of their threat status at full Deficient (DD) owing to uncertainties regarding the species level was carried out during 2006, as a contri - limits of the taxon and therefore its distribution. For bution to the Ecuadorian national plant Red Data the 171 species that were fully evaluated, Table 1 Book 2. The present report summarises the results of summarizes the results of the latest re-evaluation and this re-evaluation and assesses changes since 2002. the previous full evaluation in 2002 1. No species were As in the last report 1, all species have been evaluated classified as EW (Extinct in the Wild). Table 1 gives the under the IUCN criteria 3, using the same methods as numbers and percentages of species in each category, by Tye 4,5 . These threat evaluations are carried out and reveals that 100 of the 168 extant species that under the auspices of the Galapagos Plant Specialist were evaluated (excluding the three extinct and the Group of IUCN, and become the official evaluations nine DD species) are threatened (60%). -
Catálogo De Solanaceae De La Región La Libertad, Perú Catalogue of Solanaceae of La Libertad Region, Peru
Rodríguez et al.: Catálogo de Solanaceae de la región La Libertad, Perú Arnaldoa 27 (2): 497-534, 2020 ISSN: 1815-8242 (edición impresa) http://doi.org/10.22497/arnaldoa.272.27205 ISSN: 2413-3299 (edición online) Catálogo de Solanaceae de la región La Libertad, Perú Catalogue of Solanaceae of La Libertad region, Peru Eric F. Rodríguez Rodríguez Herbarium Truxillense (HUT), Universidad Nacional de Trujillo, Jr. San Martín 392, Trujillo, PERÚ [email protected] // https://orcid.org/0000-0003-0671-1535 Segundo Leiva González Facultad de Medicina Humana, Universidad Privada Antenor Orrego, Museo de Historia Natural y Cultural, Casilla Postal 1075, Trujillo, PERÚ [email protected]/[email protected] // https://orcid.org/0000-0002-1856-5961 Luis E. Pollack Velásquez Departamento Académico de Ciencias Biológicas, Facultad de Ciencias Biológicas, Universidad Nacional de Trujillo, Av. Juan Pablo II s. n., Trujillo, PERÚ [email protected] // https://orcid.org/0000-0001-6097-3355 Elmer Alvítez Izquierdo Departamento Académico de Ciencias Biológicas, Facultad de Ciencias Biológicas, Universidad Nacional de Trujillo. Avda. Juan Pablo II s.n. Trujillo, PERÚ [email protected] // https://orcid.org/0000-0001-8653-1811 27 (2): Mayo - Agosto, 2020 497 Rodríguez et al.: Catálogo de Solanaceae de la región La Libertad, Perú Recibido: 12-IV-2020; aceptado: 23-V-2020; publicado online: 31-VII-2020; publicado impreso: 30-VIII-2020 Resumen Se da a conocer un catálogo de la familia Solanaceae de la región La Libertad, Perú. El estudio estuvo basado en nuevas colecciones efectuadas por los autores en los últimos años, en las revisiones de un importante número de ejemplares de herbario y bibliografía especializada. -
Redalyc.Listado Anotado De Solanum L. (Solanaceae) En El Perú
Revista Peruana de Biología ISSN: 1561-0837 [email protected] Universidad Nacional Mayor de San Marcos Perú Särkinen, Tiina; Baden, Maria; Gonzáles, Paúl; Cueva, Marco; Giacomin, Leandro L.; Spooner, David M.; Simon, Reinhard; Juárez, Henry; Nina, Pamela; Molina, Johanny; Knapp, Sandra Listado anotado de Solanum L. (Solanaceae) en el Perú Revista Peruana de Biología, vol. 22, núm. 1, abril, 2015, pp. 3-62 Universidad Nacional Mayor de San Marcos Lima, Perú Disponible en: http://www.redalyc.org/articulo.oa?id=195038591001 Cómo citar el artículo Número completo Sistema de Información Científica Más información del artículo Red de Revistas Científicas de América Latina, el Caribe, España y Portugal Página de la revista en redalyc.org Proyecto académico sin fines de lucro, desarrollado bajo la iniciativa de acceso abierto Revista peruana de biología 22(1): 003 - 062 (2015) ISSN-L 1561-0837 Listado anotado de SOLANUM L. (Solanaceae) en el Perú doi: http://dx.doi.org/10.15381/rpb.v22i1.11121 Facultad de Ciencias Biológicas UNMSM TRABAJOS ORIGINALES Listado anotado de Solanum L. (Solanaceae) en el Perú Annotated checklist of Solanum L. (Solanaceae) for Peru Tiina Särkinen1, Maria Baden2, Paúl Gonzáles3, Marco Cueva4, Leandro L. Giacomin5,6,7, David M. Spooner8, Reinhard Simon9, Henry Juárez9, Pamela Nina3, Johanny Molina3 and Sandra Knapp10 1 Royal Botanic Garden Edinburgh, 20A Inverleith Row, EH3 5LR Edinburgh, United Kingdom. 2 Department of Biology, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark. 3 Laboratorio de Florística, Departamento de Dicotiledóneas, Museo de Historia Natural - Universidad Nacional Mayor de San Marcos, Avenida Arenales 1256, Apartado Postal 14-0434, Lima, Perú.