bioRxiv preprint doi: https://doi.org/10.1101/612085; this version posted April 26, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 The de novo reference genome and transcriptome assemblies of the wild tomato species Solanum 2 chilense 3 4 Remco Stam1,2*§, Tetyana Nosenko3,4§, Anja C. Hörger5, Wolfgang Stephan6, Michael Seidel3, José M.M. 5 Kuhn7, Georg Haberer3#, Aurelien Tellier2# 6 7 1 Phytopathology, Technical University Munich, Germany 8 2 Population Genetics, Technical University Munich, Germany 9 3 Plant Genome and Systems Biology, Helmholtz Center of Munich, Germany 10 4 Environmental Simulations, Helmholtz Center of Munich, Germany 11 5 Department of Biosciences, University of Salzburg, Austria 12 6 Evolutionary Biology, LMU Munich and Natural History Museum Berlin, Germany 13 7 Evolutionary Biology and Ecology, Albert-Ludwig University of Freiburg, Germany 14 15 *corresponding author:
[email protected] 16 § contributed equally 17 # contributed equally 18 19 Keywords: 20 Genome sequence assembly, Transcriptome, Evolutionary Genomics, Tomato, NLR genes 1 1 bioRxiv preprint doi: https://doi.org/10.1101/612085; this version posted April 26, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 21 ABSTRACT 22 Background 23 Wild tomato species, like Solanum chilense, are important germplasm resources for enhanced biotic and 24 abiotic stress resistance in tomato breeding.