Drivers and Ecological Consequences of Dominance in Periurban Phytoplankton Communities Using Networks Approaches
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Planktothrix Agardhii É a Mais Comum
Accessing Planktothrix species diversity and associated toxins using quantitative real-time PCR in natural waters Catarina Isabel Prata Pereira Leitão Churro Doutoramento em Biologia Departamento Biologia 2015 Orientador Vitor Manuel de Oliveira e Vasconcelos, Professor Catedrático Faculdade de Ciências iv FCUP Accessing Planktothrix species diversity and associated toxins using quantitative real-time PCR in natural waters The research presented in this thesis was supported by the Portuguese Foundation for Science and Technology (FCT, I.P.) national funds through the project PPCDT/AMB/67075/2006 and through the individual Ph.D. research grant SFRH/BD65706/2009 to Catarina Churro co-funded by the European Social Fund (Fundo Social Europeu, FSE), through Programa Operacional Potencial Humano – Quadro de Referência Estratégico Nacional (POPH – QREN) and Foundation for Science and Technology (FCT). The research was performed in the host institutions: National Institute of Health Dr. Ricardo Jorge (INSA, I.P.), Lisboa; Interdisciplinary Centre of Marine and Environmental Research (CIIMAR), Porto and Centre for Microbial Resources (CREM - FCT/UNL), Caparica that provided the laboratories, materials, regents, equipment’s and logistics to perform the experiments. v FCUP Accessing Planktothrix species diversity and associated toxins using quantitative real-time PCR in natural waters vi FCUP Accessing Planktothrix species diversity and associated toxins using quantitative real-time PCR in natural waters ACKNOWLEDGMENTS I would like to express my gratitude to my supervisor Professor Vitor Vasconcelos for accepting to embark in this research and supervising this project and without whom this work would not be possible. I am also greatly thankful to my co-supervisor Elisabete Valério for the encouragement in pursuing a graduate program and for accompanying me all the way through it. -
Lateral Gene Transfer of Anion-Conducting Channelrhodopsins Between Green Algae and Giant Viruses
bioRxiv preprint doi: https://doi.org/10.1101/2020.04.15.042127; this version posted April 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 5 Lateral gene transfer of anion-conducting channelrhodopsins between green algae and giant viruses Andrey Rozenberg 1,5, Johannes Oppermann 2,5, Jonas Wietek 2,3, Rodrigo Gaston Fernandez Lahore 2, Ruth-Anne Sandaa 4, Gunnar Bratbak 4, Peter Hegemann 2,6, and Oded 10 Béjà 1,6 1Faculty of Biology, Technion - Israel Institute of Technology, Haifa 32000, Israel. 2Institute for Biology, Experimental Biophysics, Humboldt-Universität zu Berlin, Invalidenstraße 42, Berlin 10115, Germany. 3Present address: Department of Neurobiology, Weizmann 15 Institute of Science, Rehovot 7610001, Israel. 4Department of Biological Sciences, University of Bergen, N-5020 Bergen, Norway. 5These authors contributed equally: Andrey Rozenberg, Johannes Oppermann. 6These authors jointly supervised this work: Peter Hegemann, Oded Béjà. e-mail: [email protected] ; [email protected] 20 ABSTRACT Channelrhodopsins (ChRs) are algal light-gated ion channels widely used as optogenetic tools for manipulating neuronal activity 1,2. Four ChR families are currently known. Green algal 3–5 and cryptophyte 6 cation-conducting ChRs (CCRs), cryptophyte anion-conducting ChRs (ACRs) 7, and the MerMAID ChRs 8. Here we 25 report the discovery of a new family of phylogenetically distinct ChRs encoded by marine giant viruses and acquired from their unicellular green algal prasinophyte hosts. -
Harmful Cyanobacteria Blooms and Their Toxins In
Harmful cyanobacteria blooms and their toxins in Clear Lake and the Sacramento-San Joaquin Delta (California) 10-058-150 Surface Water Ambient Monitoring Program (SWAMP) Prepared for: Central Valley Regional Water Quality Control Board 11020 Sun Center Drive, Suite 200 Rancho Cordova, CA 95670 Prepared by: Cécile Mioni (Project Director) & Raphael Kudela (Project co-Director) University of California, Santa Cruz - Institute of Marine Sciences Dolores Baxa (Project co-Director) University of California, Davis – School of Veterinary Medicine Contract manager: Meghan Sullivan Central Valley Regional Water Quality Control Board _________________ With technical contributions by: Kendra Hayashi (Project manager), UCSC Thomas Smythe (Field Officer) and Chris White, Lake County Water Resources Scott Waller (Field Officer) and Brianne Sakata, EMP/DWR Tomo Kurobe (Molecular Biologist), UCD David Crane (Toxicology), DFG-WPCL Kim Ward, SWRCB/DWQ Lenny Grimaldo (Assistance for Statistic Analyses), Bureau of Reclamation Peter Raimondi (Assistance for Statistic Analyses), UCSC Karen Tait, Lake County Health Office Abstract Harmful cyanobacteria and their toxins are growing contaminants of concern. Noxious toxins produced by HC, collectively referred as cyanotoxins, reduce the water quality and may impact the supply of clean water for drinking as well as the water quality which directly impacts the livelihood of other species including several endangered species. USEPA recently (May 29, 2008) made the decision to add microcystin toxins as an additional cause of impairment for the Klamath River, CA. However, harmful cyanobacteria are some of the less studied causes of impairment in California water bodies and their distribution, abundance and dynamics, as well as the conditions promoting their proliferation and toxin production are not well characterized. -
Phylogenetic Analysis and Substitution Rate Estimation of Colonial Volvocine Algae Based on Mitochondrial Genomes
G C A T T A C G G C A T genes Article Phylogenetic Analysis and Substitution Rate Estimation of Colonial Volvocine Algae Based on Mitochondrial Genomes Yuxin Hu 1,2, Weiyue Xing 1,2, Zhengyu Hu 3 and Guoxiang Liu 1,* 1 Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China; [email protected] (Y.H.); [email protected] (W.X.) 2 School of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China 3 State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China; [email protected] * Correspondence: [email protected]; Tel.: +86-027-6878-0576 Received: 11 December 2019; Accepted: 15 January 2020; Published: 20 January 2020 Abstract: We sequenced the mitochondrial genome of six colonial volvocine algae, namely: Pandorina morum, Pandorina colemaniae, Volvulina compacta, Colemanosphaera angeleri, Colemanosphaera charkowiensi, and Yamagishiella unicocca. Previous studies have typically reconstructed the phylogenetic relationship between colonial volvocine algae based on chloroplast or nuclear genes. Here, we explore the validity of phylogenetic analysis based on mitochondrial protein-coding genes. Wefound phylogenetic incongruence of the genera Yamagishiella and Colemanosphaera. In Yamagishiella, the stochastic error and linkage group formed by the mitochondrial protein-coding genes prevent phylogenetic analyses from reflecting the true relationship. In Colemanosphaera, a different reconstruction approach revealed a different phylogenetic relationship. This incongruence may be because of the influence of biological factors, such as incomplete lineage sorting or horizontal gene transfer. We also analyzed the substitution rates in the mitochondrial and chloroplast genomes between colonial volvocine algae. -
Algal Flora of Jagadishpur Tal, Kapilvastu, Nepal
2019J. Pl. Res. Vol. 17, No. 1, pp 6-20, 2019 Journal of Plant Resources Vol.17, No. 1 Algal Flora of Jagadishpur Tal, Kapilvastu, Nepal Shiva Kumar Rai* and Shristey Paudel Phycology Research Lab, Department of Botany, Post Graduate Campus Tribhuvan University, Biratnagar, Nepal *E-mail: [email protected] Abstract Algal flora of Jagadishpur reservoir has been studied in the year 2015-16. A total 124 algae belonging to 58 genera and 9 classes were enumerated. Out of these, 35 algae were reported as new to Nepal. Genus Cosmarium has maximum number of species as usual. The rare but interesting algae reported from this reservoir were Bambusina brebissonii, Crucigenia apiculata, Dinobryon divergens, Encyonema silesiacum, Lemmermanniella cf. uliginosa, Quadrigula chodatii, Rhabdogloea linearis, Schroederia indica, Stenopterobia intermedia, Teilingia granulata and Triplastrum abbreviatum. Algal flora of Jagadishpur reservoir is rich and diverse. It needs further studies to update algal documentation and conservation. Keywords: Cyanobacteria, Diatoms, Green algae, New to Nepal, Quadrigula chodatii Introduction Algal flora of Jagadishpur reservoir has not been studied before. Thus, it is the preliminary work on Literature revealed that algal studies in Nepal have algae for this reservoire. been carried out by various workers from different places in different time though extensive exploration Materials and Methods is still incomplete. Most of the workers were confined in and around Kathmandu valley and the Study area Himalayan regions. Western parts of the country is least studied. Algae of various lakes and reservoirs Jagadishpur reservoir (27°37N and 83°06'E, alt. 197 of Nepal have been studied: Phewa and Begnas m msl) lies in the Kapilvastu Municipality 9, Lakes (Hickel, 1973; Nakanishi, 1986), Rara lake Kapilvastu District, Lumbini zone, Central Nepal; (Watanabe, 1995; Jüttner et al., 2018), Taudaha Lake about 10 km north from Taulihawa, the district (Bhatta et al., 1999), Mai Pokhari Lake (Rai, 2005, headquarters. -
Solutions for Managing Cyanobacterial Blooms
Solutions for managing cyanobacterial blooms A scientific summary for policy makers This report was prepared by the SCOR-IOC Scientific Steering Committee of the Global Ecology and Oceanography of Harmful Algal Blooms research programme GlobalHAB, with contributions from colleagues. GlobalHAB (since 2014) is an international programme that aims to improve understanding and prediction of HABs in aquatic ecosystems, and management and mitigation of their impacts, and is sponsored by the Scientific Committee on Oceanic Research (SCOR) and the Intergovernmental Oceanographic Commission (IOC) of UNESCO. Authors: M.A. Burford (Griffith University), C.J. Gobler (Stony Brook University), D.P. Hamilton (Griffith University), P.M. Visser (University of Amsterdam), M. Lurling (Wageningen University), G.A. Codd (University of Dundee). For bibliographic purposes this document should be cited as: M.A. Burford et al. 2019. Solutions for managing cyanobacterial blooms: A scientific summary for policy makers. IOC/UNESCO, Paris (IOC/INF-1382). This summary was prepared by academics from various universities and regions. This summary of solutions is published as a brief information with the understanding that the GlobalHAB sponsors, and contributing authors are supplying information but are not attempting to render engineering or other professional services. If such services are required, the assistance of appropriate professionals should be sought. Furthermore, the sponsors, and the authors do not endorse any products or commercial services mentioned in the text. The designations employed and the presentation of the material in this publication do not imply the expression of any opinion whatsoever on the part of the Secretariats of SCOR and IOC. Design by Liveworm Studio, Queensland College of Art, Griffith University. -
Phylogenetic Analysis of ''Volvocacae'
Phylogenetic analysis of ‘‘Volvocacae’’ for comparative genetic studies Annette W. Coleman† Division of Biology and Medicine, Brown University, Providence, RI 02912 Edited by Elisabeth Gantt, University of Maryland, College Park, MD, and approved September 28, 1999 (received for review June 30, 1999) Sequence analysis based on multiple isolates representing essen- most of those obtained previously with data for other DNA tially all genera and species of the classic family Volvocaeae has regions in identifying major clades and their relationships. clarified their phylogenetic relationships. Cloned internal tran- However, the expanded taxonomic coverage revealed additional scribed spacer sequences (ITS-1 and ITS-2, flanking the 5.8S gene of and unexpected relationships. the nuclear ribosomal gene cistrons) were aligned, guided by ITS transcript secondary structural features, and subjected to parsi- Materials and Methods mony and neighbor joining distance analysis. Results confirm the The algal isolates that form the basis of this study are listed below notion of a single common ancestor, and Chlamydomonas rein- and Volvocacean taxonomy is summarized in Table 1. The taxon harditii alone among all sequenced green unicells is most similar. names are those found in the culture collection listings. Included Interbreeding isolates were nearest neighbors on the evolutionary is the Culture Collection designation [University of Texas, tree in all cases. Some taxa, at whatever level, prove to be clades National Institute for Environmental Studies (Japan), A.W.C. or by sequence comparisons, but others provide striking exceptions. R. C. Starr collection], an abbreviated name, and the GenBank The morphological species Pandorina morum, known to be wide- accession number. -
{Download PDF} Freshwater Life
FRESHWATER LIFE PDF, EPUB, EBOOK Malcolm Greenhalgh,Denys Ovenden | 256 pages | 30 Mar 2007 | HarperCollins Publishers | 9780007177776 | English | London, United Kingdom Freshwater Life PDF Book Classes of organisms found in marine ecosystems include brown algae , dinoflagellates , corals , cephalopods , echinoderms , and sharks. Gastrotrichs phylum: Gastrotricha are small and flat worms very hairy whose body ends with two quite large appendixes. In fact, many of them are equipped with one or two or even more flagella. But this was no typical love story. Figure 9 - Pediastrum sp. Once it leaves the freshwater, it does not eat, and so after it spawns its energy reserves are used up and it dies. You can see that life on Earth survives on what is essentially only a "drop in the bucket" of Earth's total water supply! Anisonema Figure 7 is an alga lacking in chloroplasts which feeds on organic detritus. Figure 13 - Spirogyrae in conjugation. Download as PDF Printable version. The simple study of animal behaviour whilst sitting on the edge of a pond is also useful. Adult freshwater snails are capable of exploits which are difficult to imagine. They are also known as Cyanophyceae because of their blue- green colour. Wetlands can be part of the lentic system, as they form naturally along most lake shores, the width of the wetland and littoral zone being dependent upon the slope of the shoreline and the amount of natural change in water levels, within and among years. Survey Manual. This region is called the thermocline. Cite this article Pick a style below, and copy the text for your bibliography. -
Genomic and Metabolic Comparison of Benthic and Planktic Strains
Research Collection Journal Article Insights into the Planktothrix genus: Genomic and metabolic comparison of benthic and planktic strains Author(s): Pancrace, Claire; Barny, Marie-Anne; Ueoka, Reiko; Calteau, Alexandra; Scalvenzi, Thibault; Pédron, Jaques; Barbe, Valérie; Piel, Jörn; Humbert, Jean-François; Gugger, Muriel Publication Date: 2017-01-24 Permanent Link: https://doi.org/10.3929/ethz-b-000128455 Originally published in: Scientific Reports 7, http://doi.org/10.1038/srep41181 Rights / License: Creative Commons Attribution 4.0 International This page was generated automatically upon download from the ETH Zurich Research Collection. For more information please consult the Terms of use. ETH Library www.nature.com/scientificreports OPEN Insights into the Planktothrix genus: Genomic and metabolic comparison of benthic and planktic Received: 04 October 2016 Accepted: 16 December 2016 strains Published: 24 January 2017 Claire Pancrace1,2,3, Marie-Anne Barny2, Reiko Ueoka4, Alexandra Calteau5, Thibault Scalvenzi1, Jacques Pédron2, Valérie Barbe6, Joern Piel4, Jean-François Humbert2 & Muriel Gugger1 Planktothrix is a dominant cyanobacterial genus forming toxic blooms in temperate freshwater ecosystems. We sequenced the genome of planktic and non planktic Planktothrix strains to better represent this genus diversity and life style at the genomic level. Benthic and biphasic strains are rooting the Planktothrix phylogenetic tree and widely expand the pangenome of this genus. We further investigated in silico the genetic potential dedicated to gas vesicles production, nitrogen fixation as well as natural product synthesis and conducted complementary experimental tests by cell culture, microscopy and mass spectrometry. Significant differences for the investigated features could be evidenced between strains of different life styles. The benthicPlanktothrix strains showed unexpected characteristics such as buoyancy, nitrogen fixation capacity and unique natural product features. -
Identification of Freshwater Invertebrates
Identification of Freshwater Invertebrates © 2008 Pennsylvania Sea Grant To request copies, please contact: Sara Grisé email: [email protected] Table of Contents A. Benthic Macroinvertebrates……………………….………………...........…………1 Arachnida………………………………..………………….............….…2 Bivalvia……………………...…………………….………….........…..…3 Clitellata……………………..………………….………………........…...5 Gastropoda………………………………………………………..............6 Hydrozoa………………………………………………….…………....…8 Insecta……………………..…………………….…………......…..……..9 Malacostraca………………………………………………....…….…....22 Turbellaria…………………………………………….….…..........…… 24 B. Plankton…………………………………………...……….………………............25 Phytoplankton Bacillariophyta……………………..……………………...……….........26 Chlorophyta………………………………………….....…………..........28 Cyanobacteria…...……………………………………………..…….…..32 Gamophyta…………………………………….…………...….…..…….35 Pyrrophycophyta………………………………………………………...36 Zooplankton Arthropoda……………………………………………………………....37 Ciliophora……………………………………………………………......41 Rotifera………………………………………………………………......43 References………………………………………………………….……………….....46 Taxonomy is the science of classifying and naming organisms according to their characteris- tics. All living organisms are classified into seven levels: Kingdom, Phylum, Class, Order, Family, Genus, and Species. This book classifies Benthic Macroinvertebrates by using their Class, Family, Genus, and Species. The Classes are the categories at the top of the page in colored text corresponding to the color of the page. The Family is listed below the common name, and the Genus and Spe- cies names -
Studies on the Influence of Microcystis Aeruginosa on the Ecology and Fish Production of Carp Culture Ponds
African Journal of Biotechnology Vol. 8 (9), pp. 1911-1918, 4 May, 2009 Available online at http://www.academicjournals.org/AJB ISSN 1684–5315 © 2009 Academic Journals Full Length Research Paper Studies on the influence of Microcystis aeruginosa on the ecology and fish production of carp culture ponds P. Padmavathi* and K. Veeraiah Department of Zoology, Acharya Nagarjuna University, Nagarjuna Nagar - 522 510, A.P., India. Accepted 26 December, 2008 In many fish ponds, blue-green algae (Cyanobacteria) constitute the greater part of the phytoplankton. Of the blue-green algae common in fish ponds, Microcystis aeruginosa is said to be a noxious species. It sometimes forms spectacular water blooms, often with harmful consequences such as depletion of oxygen, poor growth of fish and even mass mortality among the fish. The present study was aimed at investigating the influence of different levels of M. aeruginosa on the water quality and fish production of carp culture ponds. For the present study, three carp culture ponds with high, moderate and low levels of M. aeruginosa were selected. In the three ponds, physico-chemical parameters of water, phyto- and zooplankton and fish production were studied. The results indicated that the fish yield was low with concomitant fish mortalities in the pond with high levels of M. aeruginosa compared to the other two ponds. The influence of the different levels of M. aeruginosa on other planktonic groups and in turn their effect on fish production were analyzed and discussed in the light of the existing literature. Key words: Cyanobacteria, algal blooms, Microcystis, phytoplankton, zooplankton, fish production, carp culture ponds. -
Freshwater Phytoplankton ID SHEET
Aphanizomenon spp. Notes about Aphanizomenon: Freshwater Toxin: Saxitoxin N-fixation: Yes Phytoplankton Cyanophyta – Cyanophyceae – Nostocales 4 described species ID SHEET Trichomes solitary or gathered in small or large fascicles (clusters) with trichomes arranged in parallel layers. TARGET ALGAE Dillard, G. (1999). Credit: GreenWater Laboratories/CyanoLab Anabaena spp. Anabaena spp. Notes about Anabaena: (now Dolichospermum) (now Dolichospermum) akinete Toxin: Anatoxin-a N-fixation: Yes Cyanophyta – Cyanophyceae – Nostocales More than 80 known species heterocyte Trichomes are straight, curved or coiled, in some species with mucilaginous colorless envelopes, mat forming. heterocyte akinete Credit: GreenWater Laboratories/CyanoLab Credit: GreenWater Laboratories/CyanoLab Dillard, G. (1999). Credit: GreenWater Laboratories/CyanoLab Notes about Cylindrospermopsis: Toxin: Cylindrospermopsin N-fixation: Yes Cyanophyta – Cyanophyceae – Nostocales Around 10 known species Trichomes are straight, bent or spirally coiled. Cells are cylindrical or barrel-shaped pale blue- green or yellowish, with aerotypes. Heterocytes nWater Laboratories/CyanoLab and akinetes are terminal. Gree Credit: Cylindrospermopsis spp. Cylindrospermopsis spp. Straight morphotype Curved morphotype Dillard, G. (1999). Notes about Microcystis: K Toxin: Microcystin N-fixation: No Cyanophyta – Cyanophyceae – Chroococcales Around 25 known species Colonies are irregular, cloud-like with hollow spaces and sometimes with a well developed outer margin. Cells are spherical with may