Uroleptus Willii Nov. Sp., a Euplanktonic Freshwater Ciliate
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Inverted Repetitious Sequencesin the Macronuclear DNA Of
Proc. Nat. Acad. Sci. USA Vol. 72, No. 2, pp. 678-682, February 1975 Inverted Repetitious Sequences in the Macronuclear DNA of Hypotrichous Ciliates* (electron microscopy/site-specific endonuclease/DNA structure) RONALD D. WESLEY Department of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, Colo. 80302 Communicated by David M. Prescott, November 27,1974 ABSTRACT The low-molecular-weight macronuclear renaturation kinetics of denatured macronuclear DNA are DNA of the hypotrichous ciliates Oxytricha, Euplotes, and the presence of a Paraurostyla contains inverted repetitious sequences. Up approximately second-order, indicating to 89% of the denatured macronuclear DNA molecules single DNA component with a complexity about 13 times form single-stranded circles due to intramolecular re- greater than Escherichia coli DNA (M. Lauth, J. Heumann, naturation of complementary sequences at or near the B. Spear, and D. M. Prescott, manuscript in preparation). ends of the same polynucleotide chain. Other ciliated (ini) The macronuclear DNA pieces possess a polarity, i.e., protozoans, such as Tetrahymena, with high-molecular- weight macronuclear DNA and an alternative mode of one end is different from the other, because a large region at macronuclear development, appear to lack these self- one end of each molecule melts at a slightly lower temperature complementary sequences. than the rest of the molecule, and because RNA polymerase The denatured macronuclear molecules of hypotrichs binds exclusively at only one end (7). are held in the circular conformation by a hydrogen- The experiments reported here demonstrate that single- bonded duplex region, which is probably less than 50 base pairs in length, since the duplex regions are not visible by strand nicks or gaps and inverted repetitious sequences are electron microscopy and since the circles in 0.12 M phos- other important structural features of macronuclear DNA. -
Protistology an International Journal Vol
Protistology An International Journal Vol. 10, Number 2, 2016 ___________________________________________________________________________________ CONTENTS INTERNATIONAL SCIENTIFIC FORUM «PROTIST–2016» Yuri Mazei (Vice-Chairman) Welcome Address 2 Organizing Committee 3 Organizers and Sponsors 4 Abstracts 5 Author Index 94 Forum “PROTIST-2016” June 6–10, 2016 Moscow, Russia Website: http://onlinereg.ru/protist-2016 WELCOME ADDRESS Dear colleagues! Republic) entitled “Diplonemids – new kids on the block”. The third lecture will be given by Alexey The Forum “PROTIST–2016” aims at gathering Smirnov (Saint Petersburg State University, Russia): the researchers in all protistological fields, from “Phylogeny, diversity, and evolution of Amoebozoa: molecular biology to ecology, to stimulate cross- new findings and new problems”. Then Sandra disciplinary interactions and establish long-term Baldauf (Uppsala University, Sweden) will make a international scientific cooperation. The conference plenary presentation “The search for the eukaryote will cover a wide range of fundamental and applied root, now you see it now you don’t”, and the fifth topics in Protistology, with the major focus on plenary lecture “Protist-based methods for assessing evolution and phylogeny, taxonomy, systematics and marine water quality” will be made by Alan Warren DNA barcoding, genomics and molecular biology, (Natural History Museum, United Kingdom). cell biology, organismal biology, parasitology, diversity and biogeography, ecology of soil and There will be two symposia sponsored by ISoP: aquatic protists, bioindicators and palaeoecology. “Integrative co-evolution between mitochondria and their hosts” organized by Sergio A. Muñoz- The Forum is organized jointly by the International Gómez, Claudio H. Slamovits, and Andrew J. Society of Protistologists (ISoP), International Roger, and “Protists of Marine Sediments” orga- Society for Evolutionary Protistology (ISEP), nized by Jun Gong and Virginia Edgcomb. -
Bacterial and Archaeal Symbioses with Protists, Current Biology (2021), J.Cub.2021.05.049
Please cite this article in press as: Husnik et al., Bacterial and archaeal symbioses with protists, Current Biology (2021), https://doi.org/10.1016/ j.cub.2021.05.049 ll Review Bacterial and archaeal symbioses with protists Filip Husnik1,2,*, Daria Tashyreva3, Vittorio Boscaro2, Emma E. George2, Julius Lukes3,4, and Patrick J. Keeling2,* 1Okinawa Institute of Science and Technology, Okinawa, 904-0495, Japan 2Department of Botany, University of British Columbia, Vancouver, V6T 1Z4, Canada 3Institute of Parasitology, Biology Centre, Czech Academy of Sciences, Ceske Budejovice, 370 05, Czech Republic 4Faculty of Science, University of South Bohemia, Ceske Budejovice, 370 05, Czech Republic *Correspondence: fi[email protected] (F.H.), [email protected] (P.J.K.) https://doi.org/10.1016/j.cub.2021.05.049 SUMMARY Most of the genetic, cellular, and biochemical diversity of life rests within single-celled organisms—the pro- karyotes (bacteria and archaea) and microbial eukaryotes (protists). Very close interactions, or symbioses, between protists and prokaryotes are ubiquitous, ecologically significant, and date back at least two billion years ago to the origin of mitochondria. However, most of our knowledge about the evolution and functions of eukaryotic symbioses comes from the study of animal hosts, which represent only a small subset of eukary- otic diversity. Here, we take a broad view of bacterial and archaeal symbioses with protist hosts, focusing on their evolution, ecology, and cell biology, and also explore what functions (if any) the symbionts provide to their hosts. With the immense diversity of protist symbioses starting to come into focus, we can now begin to see how these systems will impact symbiosis theory more broadly. -
The Amoeboid Parabasalid Flagellate Gigantomonas Herculeaof
Acta Protozool. (2005) 44: 189 - 199 The Amoeboid Parabasalid Flagellate Gigantomonas herculea of the African Termite Hodotermes mossambicus Reinvestigated Using Immunological and Ultrastructural Techniques Guy BRUGEROLLE Biologie des Protistes, UMR 6023, CNRS and Université Blaise Pascal de Clermont-Ferrand, Aubière Cedex, France Summary. The amoeboid form of Gigantomonas herculea (Dogiel 1916, Kirby 1946), a symbiotic flagellate of the grass-eating subterranean termite Hodotermes mossambicus from East Africa, is observed by light, immunofluorescence and transmission electron microscopy. Amoeboid cells display a hyaline margin and a central granular area containing the nucleus, the internalized flagellar apparatus, and organelles such as Golgi bodies, hydrogenosomes, and food vacuoles with bacteria or wood particles. Immunofluorescence microscopy using monoclonal antibodies raised against Trichomonas vaginalis cytoskeleton, such as the anti-tubulin IG10, reveals the three long anteriorly-directed flagella, and the axostyle folded into the cytoplasm. A second antibody, 4E5, decorates the conspicuous crescent-shaped structure or cresta bordered by the adhering recurrent flagellum. Transmission electron micrographs show a microfibrillar network in the cytoplasmic margin and internal bundles of microfilaments similar to those of lobose amoebae that are indicative of cytoplasmic streaming. They also confirm the internalization of the flagella. The arrangement of basal bodies and fibre appendages, and the axostyle composed of a rolled sheet of microtubules are very close to that of the devescovinids Foaina and Devescovina. The very large microfibrillar cresta supporting an enlarged recurrent flagellum resembles that of Macrotrichomonas. The parabasal apparatus attached to the basal bodies is small in comparison to the cell size; this is probably related to the presence of many Golgi bodies supported by a striated fibre that are spread throughout the central cytoplasm in a similar way to Placojoenia and Mixotricha. -
Classification and Phylogeny in the Suborder Euplotina (Ciliophora, Hypotrichida) Bruce Fleming Hill
University of New Hampshire University of New Hampshire Scholars' Repository Doctoral Dissertations Student Scholarship Spring 1980 CLASSIFICATION AND PHYLOGENY IN THE SUBORDER EUPLOTINA (CILIOPHORA, HYPOTRICHIDA) BRUCE FLEMING HILL Follow this and additional works at: https://scholars.unh.edu/dissertation Recommended Citation HILL, BRUCE FLEMING, "CLASSIFICATION AND PHYLOGENY IN THE SUBORDER EUPLOTINA (CILIOPHORA, HYPOTRICHIDA)" (1980). Doctoral Dissertations. 1251. https://scholars.unh.edu/dissertation/1251 This Dissertation is brought to you for free and open access by the Student Scholarship at University of New Hampshire Scholars' Repository. It has been accepted for inclusion in Doctoral Dissertations by an authorized administrator of University of New Hampshire Scholars' Repository. For more information, please contact [email protected]. INFORMATION TO USERS This was produced from a copy of a document sent to us for microfilming. While the most advanced technological means to photograph and reproduce this document have been used, the quality is heavily dependent upon the quality of the material submitted. The following explanation of techniques is provided to help you understand markings or notations which may appear on this reproduction. 1. The sign or “target” for pages apparently lacking from the document photographed is “Missing Page(s)”. If it was possible to obtain the missing page(s) or section, they are spliced into the film along with adjacent pages. This may have necessitated cutting through an image and duplicating adjacent pages to assure you of complete continuity. 2. When an image on the film is obliterated with a round black mark it is an indication that the film inspector noticed either blurred copy because of movement during exposure, or duplicate copy. -
Ciliate Biodiversity and Phylogenetic Reconstruction Assessed by Multiple Molecular Markers Micah Dunthorn University of Massachusetts Amherst, [email protected]
University of Massachusetts Amherst ScholarWorks@UMass Amherst Open Access Dissertations 9-2009 Ciliate Biodiversity and Phylogenetic Reconstruction Assessed by Multiple Molecular Markers Micah Dunthorn University of Massachusetts Amherst, [email protected] Follow this and additional works at: https://scholarworks.umass.edu/open_access_dissertations Part of the Life Sciences Commons Recommended Citation Dunthorn, Micah, "Ciliate Biodiversity and Phylogenetic Reconstruction Assessed by Multiple Molecular Markers" (2009). Open Access Dissertations. 95. https://doi.org/10.7275/fyvd-rr19 https://scholarworks.umass.edu/open_access_dissertations/95 This Open Access Dissertation is brought to you for free and open access by ScholarWorks@UMass Amherst. It has been accepted for inclusion in Open Access Dissertations by an authorized administrator of ScholarWorks@UMass Amherst. For more information, please contact [email protected]. CILIATE BIODIVERSITY AND PHYLOGENETIC RECONSTRUCTION ASSESSED BY MULTIPLE MOLECULAR MARKERS A Dissertation Presented by MICAH DUNTHORN Submitted to the Graduate School of the University of Massachusetts Amherst in partial fulfillment of the requirements for the degree of Doctor of Philosophy September 2009 Organismic and Evolutionary Biology © Copyright by Micah Dunthorn 2009 All Rights Reserved CILIATE BIODIVERSITY AND PHYLOGENETIC RECONSTRUCTION ASSESSED BY MULTIPLE MOLECULAR MARKERS A Dissertation Presented By MICAH DUNTHORN Approved as to style and content by: _______________________________________ -
Ciliophora: Sporadotrichida: Oxytrichidae) New to Korea
Journal of Species Research 1(1):78-86, 2012 Morphological redescriptions of three Cyrtohymena ciliates (Ciliophora: Sporadotrichida: Oxytrichidae) new to Korea Yeon Uk Kim, Jung Mi Lee, Choon Bong Kwon and Mann Kyoon Shin* Department of Biological Science, College of Natural Sciences, University of Ulsan, Ulsan 680-749, Korea *Correspondent: [email protected] Three ciliate species of genus Cyrtohymena, C. australis Foissner, 1995, C. citrina (Berger & Foissner, 1987) and C. muscorum (Kahl, 1932) new to Korea, were collected from semi-terrestrial habitats. The description was based on the observation of live and silver stained specimens. Diagnostic characteristics of these species are as follows. C. autralis: size about 275×100 μm in live specimens. Cortical granules yellowish. 18-31 right and 31-40 left marginal cirri in number. Dorsal kineties eight rows. C. citrina: size about 180×50 μm in live specimens. Cortical granules yellowish. 26-32 right and 23-27 left marginal cirri in number. Dorsal kineties five to six rows. C. muscorum: size about 180×60 μm in live specimens. Cortical granules reddish. 31-34 right and 33-36 left marginal cirri in number. Dorsal kineties six rows. Three species of Cyrtohymena have been added to Korean ciliate fauna from this study. Including previous one species of C. quadrinucleata, four species of this genus in total have been recorded so far in this country. Keywords: Cyrtohymena, freshwater, morphology, soil, taxonomy, terrestrial collected from semi-terrestrial and rarely from marine INTRODUCTION habitats (Kahl, 1932; Gellért, 1956; Foissner, 1997; 1999; Berger, 1999; Song et al., 2002; Çapar, 2007). The oxytrichid genus Cyrtohymena Foissner, 1989 is In this study, we described three Cyrtohymena species highly specialized group of hypotrichous ciliates which which are new to Korea, C. -
Bacterial, Archaeal, and Eukaryotic Diversity Across Distinct Microhabitats in an Acid Mine Drainage Victoria Mesa, José.L.R
Bacterial, archaeal, and eukaryotic diversity across distinct microhabitats in an acid mine drainage Victoria Mesa, José.L.R. Gallego, Ricardo González-Gil, B. Lauga, Jesus Sánchez, Célia Méndez-García, Ana I. Peláez To cite this version: Victoria Mesa, José.L.R. Gallego, Ricardo González-Gil, B. Lauga, Jesus Sánchez, et al.. Bacterial, archaeal, and eukaryotic diversity across distinct microhabitats in an acid mine drainage. Frontiers in Microbiology, Frontiers Media, 2017, 8 (SEP), 10.3389/fmicb.2017.01756. hal-01631843 HAL Id: hal-01631843 https://hal.archives-ouvertes.fr/hal-01631843 Submitted on 14 Jan 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. fmicb-08-01756 September 9, 2017 Time: 16:9 # 1 ORIGINAL RESEARCH published: 12 September 2017 doi: 10.3389/fmicb.2017.01756 Bacterial, Archaeal, and Eukaryotic Diversity across Distinct Microhabitats in an Acid Mine Drainage Victoria Mesa1,2*, Jose L. R. Gallego3, Ricardo González-Gil4, Béatrice Lauga5, Jesús Sánchez1, Celia Méndez-García6† and Ana I. Peláez1† 1 Department of Functional Biology – IUBA, University of Oviedo, Oviedo, Spain, 2 Vedas Research and Innovation, Vedas CII, Medellín, Colombia, 3 Department of Mining Exploitation and Prospecting – IUBA, University of Oviedo, Mieres, Spain, 4 Department of Biology of Organisms and Systems – University of Oviedo, Oviedo, Spain, 5 Equipe Environnement et Microbiologie, CNRS/Université de Pau et des Pays de l’Adour, Institut des Sciences Analytiques et de Physico-chimie pour l’Environnement et les Matériaux, UMR5254, Pau, France, 6 Carl R. -
Ciliata, Hypotrichida, Oxytrichidae)
Alli Soc. Tosc. Sci. Nat. , Mem., Serie B, 92 (1985) pagg. 15-27, figg. 3. D. AMMERMANN (*) SPECIES CHARACTERIZATION AND SPECIATION IN THE STYLONYCHIA/OXYTRICHA GROUP (CILIATA, HYPOTRICHIDA, OXYTRICHIDAE) Riassunto - Caratterizzazione delle species e speciazione nel gruppo Stylony chialOxytricha (Ciliata, Hypotrichida, Oxytrichidae). Sono state esaminate alcune ca ratteristiche morfologiche e in particolare molecolari di species appartenenti al gruppo StylonychialOxytricha. Ne viene discusso il loro significato al fine della determinazio ne a livello di species e per chiarire i rapporti filetici ai vari livelli tra i taxa dei due generi in studio. Viene sottolineato che gli isoenzimi e il modello di bandeggio del DNA macronucleare sono dei buoni marcatori per la determinazione delle specie, mentre gli isoenzimi, combinati alle caratteristiche morfologiche e morfogenetiche, possono dare un ottimo quadro dei rapporti filogenetici che intercorrono fra i mem bri del gruppo. Sono riportati poi i meccanismi di isolamento riproduttivo tra le due specie crip tiche: Stylonychia mytilus e Stylonychia lemnae. Sulla base dei dati raccolti viene avanzata l'ipotesi che, nelle aree dove le due specie si sovrappongono, esse mostrano maggior divergenza morfologica e meccanismi di isolamento rinforzato. Abstract - Several morphological and especially molecular characteristics of the species of the StylonychialOxytricha group are described. lt is discussed which value they may have for species determination and for the clarification of the phylogenetic relationship of lower and higher taxa. lt is concluded that the isoen zyme and the macronuclear DNA banding pattern are good characteristics for species determination. For the investigation of phylogenetic relationship the isoenzymes, com bined with morphology and morphogenesis of the cell, are good characteristics. -
Phylogeny of the Ciliate Family Psilotrichidae (Protista
Boise State University ScholarWorks Biology Faculty Publications and Presentations Department of Biological Sciences 6-18-2019 Phylogeny of the Ciliate Family Psilotrichidae (Protista, Ciliophora), a Curious and Poorly- Known Taxon, with Notes on Two Algae-Bearing Psilotrichids from Guam, USA Xiaotian Luo Boise State University Jie A. Huang Chinese Academy of Sciences Lifang Li Shandog University Weibo Song Ocean University of China William A. Bourland Boise State University Publication Information Luo, Xiaotian; Huang, Jie A.; Li, Lifang; Song, Weibo; and Bourland, William A. (2019). "Phylogeny of the Ciliate Family Psilotrichidae (Protista, Ciliophora), a Curious and Poorly-Known Taxon, with Notes on Two Algae-Bearing Psilotrichids from Guam, USA". BMC Evolutionary Biology, 19, 125-1 - 125-15. http://dx.doi.org/10.1186/s12862-019-1450-z Luo et al. BMC Evolutionary Biology (2019) 19:125 https://doi.org/10.1186/s12862-019-1450-z RESEARCH ARTICLE Open Access Phylogeny of the ciliate family Psilotrichidae (Protista, Ciliophora), a curious and poorly-known taxon, with notes on two algae-bearing psilotrichids from Guam, USA Xiaotian Luo1,2, Jie A. Huang1, Lifang Li3, Weibo Song4 and William A. Bourland2* Abstract Background: The classification of the family Psilotrichidae, a curious group of ciliated protists with unique morphological and ontogenetic features, is ambiguous and poorly understood particularly due to the lack of molecular data. Hence, the systematic relationship between this group and other taxa in the subclass Hypotrichia remains unresolved. In this paper the morphology and phylogenetics of species from two genera of Psilotrichida are studied to shed new light on the phylogeny and species diversity of this group of ciliates. -
Morphology and Phylogeny of Four Marine Or Brackish Water Spirotrich Ciliates (Protozoa, Ciliophora) from China, with Descriptio
Available online at www.sciencedirect.com ScienceDirect European Journal of Protistology 72 (2020) 125663 Morphology and phylogeny of four marine or brackish water spirotrich ciliates (Protozoa, Ciliophora) from China, with descriptions of two new species Chunyu Liana,b, Xiaotian Luob, Alan Warrenc, Yan Zhaod,∗∗, Jiamei Jiange,f,g,∗ aInstitute of Evolution & Marine Biodiversity, Ocean University of China, Qingdao, 266003, China bKey Laboratory of Aquatic Biodiversity and Conservation of Chinese Academy of Sciences, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China cDepartment of Life Sciences, Natural History Museum, Cromwell Road, London, SW7 5BD, UK dCollege of Life Sciences, Capital Normal University, Beijing, 100048, China eShanghai Universities Key Laboratory of Marine Animal Taxonomy and Evolution, Shanghai Ocean University, Shanghai, 201306, China f Key Laboratory of Exploration and Utilization of Aquatic Genetic Resources, Shanghai Ocean University, Shanghai, 201306, China gNational Demonstration Center for Experimental Fisheries Science Education, Shanghai Ocean University, Shanghai, 201306, China Received 9 June 2019; received in revised form 25 November 2019; accepted 30 November 2019 Available online 7 December 2019 Abstract In this study, we investigated the morphology and molecular phylogeny of four marine or brackish spirotrichean cili- ates found in China, namely: Caryotricha sinica sp. nov., Prodiscocephalus orientalis sp. nov., P. cf. borrori, and Certesia quadrinucleata. Caryotricha sinica is characterized by its small size, seven cirral rows extending posteriorly to about 65% of the cell length, and four transverse cirri. Prodiscocephalus orientalis differs from its congeners mainly by the number of cirri in the “head” region and on the ventral side. The SSU rDNA sequence of P. -
Morphology, Cell-Division, and Phylogeny of Schmidingerothrix Elongata Spec
Available online at www.sciencedirect.com ScienceDirect European Journal of Protistology 62 (2018) 24–42 Morphology, cell-division, and phylogeny of Schmidingerothrix elongata spec. nov. (Ciliophora, Hypotricha), and brief guide to hypotrichs with Gonostomum-like oral apparatus Xiaoteng Lua,b,c,1, Jie Huangd,1, Chen Shaoa,∗, Helmut Bergere,∗ aThe Key Laboratory of Biomedical Information Engineering, Ministry of Education, School of Life Science and Technology, Xi’an Jiaotong University, Xi’an 710049, China bUniversity of Innsbruck, Research Institute for Limnology, Mondseestrasse 9, 5310 Mondsee, Austria cInstitute of Evolution & Marine Biodiversity, Ocean University of China, Qingdao 266003, China dKey Laboratory of Aquatic Biodiversity and Conservation of Chinese Academy of Sciences, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China eConsulting Engineering Office for Ecology, Radetzkystrasse 10, 5020 Salzburg, Austria Received 29 June 2017; received in revised form 2 November 2017; accepted 6 November 2017 Abstract The hypotrich Schmidingerothrix elongata spec. nov., discovered in saline (20‰) soil of the Longfeng Wetland, Daqing, northern China, was studied using live observation and protargol impregnation. It is characterized, inter alia, by colorless cortical granules arranged in short rows, three frontoventral cirral rows with the rightmost extending far posteriorly, and 4–8, usually six macronuclear nodules. Cell division proceeds as in congeners and confirms the lack of dorsal ciliature. In phylogenetic analyses based on SSU rDNA, S. elongata is sister of S. salinarum + Paracladotricha salina. A re-investigation of the type slides of P. salina, type of Paracladotricha, revealed a misobservation in the original description. Since P. salina lacks, like Schmidingerothrix spp., a dorsal ciliature, Paracladotricha becomes a junior, subjective synonym of Schmidingerothrix with S.