The Amoeboid Parabasalid Flagellate Gigantomonas Herculeaof
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The Morphology, Ultrastructure and Molecular Phylogeny of a New Freshwater Heterolobose Amoeba Parafumarolamoeba Stagnalis N. Sp
diversity Article The Morphology, Ultrastructure and Molecular Phylogeny of a New Freshwater Heterolobose Amoeba Parafumarolamoeba stagnalis n. sp. (Vahlkampfiidae; Heterolobosea) Anastasia S. Borodina 1,2, Alexander P. Mylnikov 1,†, Jan Janouškovec 3 , Patrick J. Keeling 4 and Denis V. Tikhonenkov 1,5,* 1 Papanin Institute for Biology of Inland Waters, Russian Academy of Sciences, 152742 Borok, Russia; [email protected] 2 Department of Zoology and Parasitology, Voronezh State University, Universitetskaya Ploshad 1, 394036 Voronezh, Russia 3 Centre Algatech, Laboratory of Photosynthesis, Institute of Microbiology, Czech Academy of Sciences, Opatovický Mlýn, 37981 Tˇreboˇn,Czech Republic; [email protected] 4 Department of Botany, University of British Columbia, 6270 University Boulevard, Vancouver, BC V6T1Z4, Canada; [email protected] 5 AquaBioSafe Laboratory, University of Tyumen, 625003 Tyumen, Russia * Correspondence: [email protected]; Tel.: +7-485-472-4533 † Alexander P. Mylnikov is deceased. http://zoobank.org/References/e543a49a-16c1-4b7c-afdb-0bc56b632ef0 Abstract: Heterolobose amoebae are important members of marine, freshwater, and soil microbial Citation: Borodina, A.S.; Mylnikov, communities, but their diversity remains under-explored. We studied the diversity of Vahlkampfiidae A.P.; Janouškovec, J.; Keeling, P.J.; to improve our understanding of heterolobosean relationships and their representation in aquatic Tikhonenkov, D.V. The Morphology, benthos. Using light and electron microscopy, and molecular phylogenies based on the SSU rRNA Ultrastructure and Molecular and ITS loci, we describe the fine morphology and evolutionary relationships of a new heterolobosean Phylogeny of a New Freshwater Parafumarolamoeba stagnalis n. sp. from a small pond in European Russia. Cells of P. stagnalis possess Heterolobose Amoeba a clearly distinguishable anterior hyaline pseudopodium, eruptive movement, several thin and Parafumarolamoeba stagnalis n. -
Morphology, Phylogeny, and Diversity of Trichonympha (Parabasalia: Hypermastigida) of the Wood-Feeding Cockroach Cryptocercus Punctulatus
J. Eukaryot. Microbiol., 56(4), 2009 pp. 305–313 r 2009 The Author(s) Journal compilation r 2009 by the International Society of Protistologists DOI: 10.1111/j.1550-7408.2009.00406.x Morphology, Phylogeny, and Diversity of Trichonympha (Parabasalia: Hypermastigida) of the Wood-Feeding Cockroach Cryptocercus punctulatus KEVIN J. CARPENTER, LAWRENCE CHOW and PATRICK J. KEELING Canadian Institute for Advanced Research, Botany Department, University of British Columbia, University Boulevard, Vancouver, BC, Canada V6T 1Z4 ABSTRACT. Trichonympha is one of the most complex and visually striking of the hypermastigote parabasalids—a group of anaerobic flagellates found exclusively in hindguts of lower termites and the wood-feeding cockroach Cryptocercus—but it is one of only two genera common to both groups of insects. We investigated Trichonympha of Cryptocercus using light and electron microscopy (scanning and transmission), as well as molecular phylogeny, to gain a better understanding of its morphology, diversity, and evolution. Microscopy reveals numerous new features, such as previously undetected bacterial surface symbionts, adhesion of post-rostral flagella, and a dis- tinctive frilled operculum. We also sequenced small subunit rRNA gene from manually isolated species, and carried out an environmental polymerase chain reaction (PCR) survey of Trichonympha diversity, all of which strongly supports monophyly of Trichonympha from Cryptocercus to the exclusion of those sampled from termites. Bayesian and distance methods support a relationship between Tricho- nympha species from termites and Cryptocercus, although likelihood analysis allies the latter with Eucomonymphidae. A monophyletic Trichonympha is of great interest because recent evidence supports a sister relationship between Cryptocercus and termites, suggesting Trichonympha predates the Cryptocercus-termite divergence. -
Tetratrichomonas and Trichomonas Spp
University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Faculty Publications and Other Works -- Veterinary Medicine -- Faculty Publications and Biomedical and Diagnostic Sciences Other Works Spring 3-2018 Tetratrichomonas and Trichomonas spp.-Associated Disease in Free-Ranging Common Eiders (Somateria mollissima) from Wellfleet Bay, MA and Description of ITS1 Region Genotypes Caroline M. Grunenwald University of Tennessee, Knoxville Inga Sidor [email protected] Randal Mickley [email protected] Chris Dwyer [email protected] Richard W. Gerhold Jr. University of Tennessee, Knoxville, [email protected] Follow this and additional works at: https://trace.tennessee.edu/utk_compmedpubs Part of the Parasitology Commons Recommended Citation C. Grunenwald, I. Sidor, R. Mickley, C. Dwyer and R. Gerhold. "Tetratrichomonas and Trichomonas spp.- Associated Disease in Free-Ranging Common Eiders (Somateria mollissima) from Wellfleet Bay, MA and Description of ITS1 Region Genotypes." Avian Diseases March 2018: Vol 62 no 1. This Article is brought to you for free and open access by the Veterinary Medicine -- Faculty Publications and Other Works at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Faculty Publications and Other Works -- Biomedical and Diagnostic Sciences by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. Tetratrichomonas and Trichomonas spp.-Associated Disease in Free-Ranging Common Eiders (Somateria mollissima) from Wellfleet Bay, MA and Description of ITS1 Region Genotypes Author(s): C. Grunenwald, I. Sidor, R. Mickley, C. Dwyer, and R. Gerhold, Source: Avian Diseases, 62(1):117-123. Published By: American Association of Avian Pathologists https://doi.org/10.1637/11742-080817-Reg.1 URL: http://www.bioone.org/doi/full/10.1637/11742-080817-Reg.1 BioOne (www.bioone.org) is a nonprofit, online aggregation of core research in the biological, ecological, and environmental sciences. -
Denis BAURAIN Département Des Sciences De La Vie Université De Liège Société Royale Des Sciences De Liège 20 Septembre 2012 Plan De L’Exposé
L’évolution des Eucaryotes Denis BAURAIN Département des Sciences de la Vie Université de Liège Société Royale des Sciences de Liège 20 septembre 2012 Plan de l’exposé 1. Qu’est-ce qu’un Eucaryote ? 2. Quelle est la diversité des Eucaryotes ? 3. Quelles sont les relations de parenté entre les grands groupes d’Eucaryotes ? 4. D’où viennent les Eucaryotes ? Qu’est-ce1 qu’un Eucaryote ? Eukaryotic Cells définition ultrastructurale : organelles spécifiques • noyau (1) • nucléole (2) • RE (5, 8) • Golgi (6) • centriole(s) (13) • mitochondrie(s) (9) • chloroplaste(s) • ... http://en.wikipedia.org/ A eukaryotic gene is arranged in a patchwork of coding (exons) and non-coding sequences (introns). Introns are eliminated while exons are spliced together to yield the mature mRNA used for protein synthesis. http://reflexions.ulg.ac.be/ Gene DNA Transcription Exon1 Exon2 Exon3 Exon4 Exon5 Exon6 pre-mRNA Alternatif splicing mature mRNA Translation Protein In many Eukaryotes, almost all genes can lead to different proteins through a process termed alternative splicing. http://reflexions.ulg.ac.be/ REVIEWS Box 2 | Endosymbiotic evolution and the tree of genomes Intracellular endosymbionts that originally descended from free-living prokaryotes have been important in the evolution of eukaryotes by giving rise to two cytoplasmic organelles. Mitochondria arose from α-proteobacteria and chloroplasts arose from cyanobacteria. Both organelles have made substantial contributions to the complement of genes that are found in eukaryotic nuclei today. The figure shows a schematic diagram of the evolution of eukaryotes, highlighting the incorporation of mitochondria and chloroplasts into the eukaryotic lineage through endosymbiosis and the subsequent co-evolution of the nuclear and organelle genomes. -
Broadly Sampled Multigene Analyses Yield a Well-Resolved Eukaryotic Tree of Life
Smith ScholarWorks Biological Sciences: Faculty Publications Biological Sciences 10-1-2010 Broadly Sampled Multigene Analyses Yield a Well-Resolved Eukaryotic Tree of Life Laura Wegener Parfrey University of Massachusetts Amherst Jessica Grant Smith College Yonas I. Tekle Smith College Erica Lasek-Nesselquist Marine Biological Laboratory Hilary G. Morrison Marine Biological Laboratory See next page for additional authors Follow this and additional works at: https://scholarworks.smith.edu/bio_facpubs Part of the Biology Commons Recommended Citation Parfrey, Laura Wegener; Grant, Jessica; Tekle, Yonas I.; Lasek-Nesselquist, Erica; Morrison, Hilary G.; Sogin, Mitchell L.; Patterson, David J.; and Katz, Laura A., "Broadly Sampled Multigene Analyses Yield a Well-Resolved Eukaryotic Tree of Life" (2010). Biological Sciences: Faculty Publications, Smith College, Northampton, MA. https://scholarworks.smith.edu/bio_facpubs/126 This Article has been accepted for inclusion in Biological Sciences: Faculty Publications by an authorized administrator of Smith ScholarWorks. For more information, please contact [email protected] Authors Laura Wegener Parfrey, Jessica Grant, Yonas I. Tekle, Erica Lasek-Nesselquist, Hilary G. Morrison, Mitchell L. Sogin, David J. Patterson, and Laura A. Katz This article is available at Smith ScholarWorks: https://scholarworks.smith.edu/bio_facpubs/126 Syst. Biol. 59(5):518–533, 2010 c The Author(s) 2010. Published by Oxford University Press, on behalf of the Society of Systematic Biologists. All rights reserved. For Permissions, please email: [email protected] DOI:10.1093/sysbio/syq037 Advance Access publication on July 23, 2010 Broadly Sampled Multigene Analyses Yield a Well-Resolved Eukaryotic Tree of Life LAURA WEGENER PARFREY1,JESSICA GRANT2,YONAS I. TEKLE2,6,ERICA LASEK-NESSELQUIST3,4, 3 3 5 1,2, HILARY G. -
The Oxymonad Genome Displays Canonical Eukaryotic Complexity in the Absence of a Mitochondrion Anna Karnkowska,*,1,2 Sebastian C
The Oxymonad Genome Displays Canonical Eukaryotic Complexity in the Absence of a Mitochondrion Anna Karnkowska,*,1,2 Sebastian C. Treitli,1 Ondrej Brzon, 1 Lukas Novak,1 Vojtech Vacek,1 Petr Soukal,1 Lael D. Barlow,3 Emily K. Herman,3 Shweta V. Pipaliya,3 TomasPanek,4 David Zihala, 4 Romana Petrzelkova,4 Anzhelika Butenko,4 Laura Eme,5,6 Courtney W. Stairs,5,6 Andrew J. Roger,5 Marek Elias,4,7 Joel B. Dacks,3 and Vladimır Hampl*,1 1Department of Parasitology, BIOCEV, Faculty of Science, Charles University, Vestec, Czech Republic 2Department of Molecular Phylogenetics and Evolution, Faculty of Biology, Biological and Chemical Research Centre, University of Warsaw, Warsaw, Poland 3Division of Infectious Disease, Department of Medicine, University of Alberta, Edmonton, Canada 4Department of Biology and Ecology, Faculty of Science, University of Ostrava, Ostrava, Czech Republic Downloaded from https://academic.oup.com/mbe/article-abstract/36/10/2292/5525708 by guest on 13 January 2020 5Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Canada 6Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden 7Institute of Environmental Technologies, Faculty of Science, University of Ostrava, Ostrava, Czech Republic *Corresponding authors: E-mails: [email protected]; [email protected]. Associate editor: Fabia Ursula Battistuzzi Abstract The discovery that the protist Monocercomonoides exilis completely lacks mitochondria demonstrates that these organ- elles are not absolutely essential to eukaryotic cells. However, the degree to which the metabolism and cellular systems of this organism have adapted to the loss of mitochondria is unknown. Here, we report an extensive analysis of the M. -
Sex Is a Ubiquitous, Ancient, and Inherent Attribute of Eukaryotic Life
PAPER Sex is a ubiquitous, ancient, and inherent attribute of COLLOQUIUM eukaryotic life Dave Speijera,1, Julius Lukešb,c, and Marek Eliášd,1 aDepartment of Medical Biochemistry, Academic Medical Center, University of Amsterdam, 1105 AZ, Amsterdam, The Netherlands; bInstitute of Parasitology, Biology Centre, Czech Academy of Sciences, and Faculty of Sciences, University of South Bohemia, 370 05 Ceské Budejovice, Czech Republic; cCanadian Institute for Advanced Research, Toronto, ON, Canada M5G 1Z8; and dDepartment of Biology and Ecology, University of Ostrava, 710 00 Ostrava, Czech Republic Edited by John C. Avise, University of California, Irvine, CA, and approved April 8, 2015 (received for review February 14, 2015) Sexual reproduction and clonality in eukaryotes are mostly Sex in Eukaryotic Microorganisms: More Voyeurs Needed seen as exclusive, the latter being rather exceptional. This view Whereas absence of sex is considered as something scandalous for might be biased by focusing almost exclusively on metazoans. a zoologist, scientists studying protists, which represent the ma- We analyze and discuss reproduction in the context of extant jority of extant eukaryotic diversity (2), are much more ready to eukaryotic diversity, paying special attention to protists. We accept that a particular eukaryotic group has not shown any evi- present results of phylogenetically extended searches for ho- dence of sexual processes. Although sex is very well documented mologs of two proteins functioning in cell and nuclear fusion, in many protist groups, and members of some taxa, such as ciliates respectively (HAP2 and GEX1), providing indirect evidence for (Alveolata), diatoms (Stramenopiles), or green algae (Chlor- these processes in several eukaryotic lineages where sex has oplastida), even serve as models to study various aspects of sex- – not been observed yet. -
The Intestinal Protozoa
The Intestinal Protozoa A. Introduction 1. The Phylum Protozoa is classified into four major subdivisions according to the methods of locomotion and reproduction. a. The amoebae (Superclass Sarcodina, Class Rhizopodea move by means of pseudopodia and reproduce exclusively by asexual binary division. b. The flagellates (Superclass Mastigophora, Class Zoomasitgophorea) typically move by long, whiplike flagella and reproduce by binary fission. c. The ciliates (Subphylum Ciliophora, Class Ciliata) are propelled by rows of cilia that beat with a synchronized wavelike motion. d. The sporozoans (Subphylum Sporozoa) lack specialized organelles of motility but have a unique type of life cycle, alternating between sexual and asexual reproductive cycles (alternation of generations). e. Number of species - there are about 45,000 protozoan species; around 8000 are parasitic, and around 25 species are important to humans. 2. Diagnosis - must learn to differentiate between the harmless and the medically important. This is most often based upon the morphology of respective organisms. 3. Transmission - mostly person-to-person, via fecal-oral route; fecally contaminated food or water important (organisms remain viable for around 30 days in cool moist environment with few bacteria; other means of transmission include sexual, insects, animals (zoonoses). B. Structures 1. trophozoite - the motile vegetative stage; multiplies via binary fission; colonizes host. 2. cyst - the inactive, non-motile, infective stage; survives the environment due to the presence of a cyst wall. 3. nuclear structure - important in the identification of organisms and species differentiation. 4. diagnostic features a. size - helpful in identifying organisms; must have calibrated objectives on the microscope in order to measure accurately. -
Primary Amoebic Meningoencephalitis Due to Naegleria Fowleri
56 Case report Primary amoebic meningoencephalitis due to Naegleria fowleri A. Angrup, L. Chandel, A. Sood, K. Thakur, S. C. Jaryal Department of Microbiology,Dr. Rajendra Prasad Government Medical College, Kangra at Tanda, Himachal Pradesh, Pin Code- 176001, India. Correspondence to: Dr. Archana Angrup, Department of Microbiology, Dr. Rajendra Prasad Government Medical College, Kangra, Tanda, Himachal Pradesh, Pin Code-176001, India. Phone no. 09418119222, Facsimile: 01892-267115 Email: [email protected] Abstract The genus Naegleria comprises of free living ameboflagellates found in soil and fresh water. More than 30 species have been isolated but only N. fowleri has been associated with human disease. N. fowleri causes primary amoebic meningoencephalitis (PAM), an acute, often fulminant infection of CNS. Here we report a rare and first case of PAM in an immunocompetent elderly patient from this part of the country. Amoeboid and flagellate forms of N. fowleri were detected in the direct microscopic examination of CSF and confirmed by flagellation test in distilled water, demonstrating plaques /clear areas on 1.5% non nutrient agar and its survival at 42°C. Keywords: Meningitis, Naegleria fowleri, primary amoebic meningoencephalitis Introduction of our knowledge, in India, only eight cases have been reported so far .1, 5-8 Infection of the central nervous system (CNS) in human We hereby report a rare case of PAM in elderly beings with free living amoebae is uncommon. Among the immunocompetent patient from the hilly state of Himachal many different genera of amoebae, Naegleria spp, Pradesh (H.P) in Northern India. Acanthamoeba spp and Balamuthia spp are primarily pathogenic to the CNS. -
First Report of Some Trichodinid Cilioph (Ciliophora: Trichodinidae
SpeciesREPORT, Vol. 17A,RTICLE No. 56, July 1, 2016 REPORT ISSN 2319–5746 EISSN 2319–5754 SpeciesAn International Journal First report of some Trichodinid Ciliophorans (Ciliophora: Peritrichida) (Ciliophora: Trichodinidae) parasitizing cultured Oranda Gold Fish (Carassius auratus auratus L.) in India Saha M1, Mondal S2, Mandal SK3, Mitra P4, Das K5 and Bandyopadhyay PK6☼ ( 1-6) Parasitology Laboratory, Department of Zoology, University of Kalyani, Kalyani 741235, West Bengal, India ☼Corresponding author : Bandyopadhyay PK, Parasitology Laboratory, Department of Zoology, University of Kalyani, Kalyani 741235, West Bengal, India. Publication History Received: 7 August 2016 Accepted: 28 August 2016 Online First: 1 September 2016 Published: July-September 2016 Citation Saha M, Mondal S, Mandal SK, Mitra P, Das K, Bandyopadhyay PK. First report of some Trichodinid Ciliophorans (Ciliophora: Peritrichida) (Ciliophora: Trichodinidae) parasitizing cultured Oranda Gold Fish (Carassius auratus auratus L.) in India. Species, 2016, 17(56), 131-140 Publication License This work is licensed under a Creative Commons Attribution 4.0 International License. General Note Article is recommended to print as color digital color version in recycled paper. ABSTRACT Ornamental fish culture considered as one of the most important means of home entertainment, because of its diversity and beauty of picturesque colors. Trichodiniasis of fishes causing harm and economic losses in this fish industry. There are many records of trichodinids ectoparasites infesting fish have been found throughout the World, but no such study has been conducted on this 131 131 131 parasitic group infesting ornamental fish Carassius auratus auratus L. in India. During the survey, four already known trichodinid Saha et al. Page Page Page First report of some Trichodinid Ciliophorans (Ciliophora: Peritrichida) (Ciliophora: Trichodinidae) parasitizing cultured Oranda Gold Fish (Carassius auratus auratus L.) in India, Species, 2016, 17(56), 131-140, www.discoveryjournals.com © 2016 Discovery Publication. -
Biosystems, 10 (1978) 67--89 67 © Elsevier/North-Holland Scientific Publishers Ltd. PROBLEMS in the DEVELOPMENT of an EXPLICIT
BioSystems, 10 (1978) 67--89 67 © Elsevier/North-Holland Scientific Publishers Ltd. PROBLEMS IN THE DEVELOPMENT OF AN EXPLICIT HYPOTHETICAL PHYLOGENY OF THE LOWER EUKARYOTES F.J.R. TAYLOR Department of Botany and Institute of Oceanography, The University of British Columbia, Vancouver, B.C., Canada V6T 1 W5 A semi-explicit arrangement of the lower eukaryotes is provided to serve as a basis for phyletic discussions. No single character is used to determine the position of all the groups. The tree provides no ready separation of protozoa, algae and fungi, groups assigned to these traditional assemblages being considered to be for the most part inextricably interwoven. Photosynthetic forms, whose relationships seem to be more readily discernable, are considered to have given rise repeatedly to nonphotosynthetic forms. The assumption that there are primitive "preflagellar" eukaryotes (red algae, non-flagellated fungi) is adopted. The potential value of mitochondrial features as indicators of broad affinities is emphasised, particularly in determining the probable affinities of non-photosynthetic forms, and this criterion is contra-indicative of a ciliate ancestry for the Metazoa. In the arrangement provided the distributions of chloroplast, mitochondrial and flagellar features match one another well, suggesting their probable co-evolution. 1. Introduction view of the relations of the algae, his "tree" contained numerous, not strictly representa- At the start of a paper of this type it is tional "twigs". Dodge {1974) was even less often appropriate to begin with an apt, but explicit, preferring to comment more on not very serious quotation to set the right taxonomic consequences. Leedale (1974) tone. In this instmace, the only quotation preferred to ignore the details of origin of which sprang readily to mind was ".. -
Superorganisms of the Protist Kingdom: a New Level of Biological Organization
Foundations of Science https://doi.org/10.1007/s10699-020-09688-8 Superorganisms of the Protist Kingdom: A New Level of Biological Organization Łukasz Lamża1 © The Author(s) 2020 Abstract The concept of superorganism has a mixed reputation in biology—for some it is a conveni- ent way of discussing supra-organismal levels of organization, and for others, little more than a poetic metaphor. Here, I show that a considerable step forward in the understand- ing of superorganisms results from a thorough review of the supra-organismal levels of organization now known to exist among the “unicellular” protists. Limiting the discussion to protists has enormous advantages: their bodies are very well studied and relatively sim- ple (as compared to humans or termites, two standard examples in most discussions about superorganisms), and they exhibit an enormous diversity of anatomies and lifestyles. This allows for unprecedented resolution in describing forms of supra-organismal organiza- tion. Here, four criteria are used to diferentiate loose, incidental associations of hosts with their microbiota from “actual” superorganisms: (1) obligatory character, (2) specifc spatial localization of microbiota, (3) presence of attachment structures and (4) signs of co-evolu- tion in phylogenetic analyses. Three groups—that have never before been described in the philosophical literature—merit special attention: Symbiontida (also called Postgaardea), Oxymonadida and Parabasalia. Specifcally, it is argued that in certain cases—for Bihos- pites bacati and Calkinsia aureus (symbiontids), Streblomastix strix (an oxymonad), Joe- nia annectens and Mixotricha paradoxa (parabasalids) and Kentrophoros (a ciliate)—it is fully appropriate to describe the whole protist-microbiota assocation as a single organism (“superorganism”) and its elements as “tissues” or, arguably, even “organs”.