Classification and Phylogeny in the Suborder Euplotina (Ciliophora, Hypotrichida) Bruce Fleming Hill
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Inverted Repetitious Sequencesin the Macronuclear DNA Of
Proc. Nat. Acad. Sci. USA Vol. 72, No. 2, pp. 678-682, February 1975 Inverted Repetitious Sequences in the Macronuclear DNA of Hypotrichous Ciliates* (electron microscopy/site-specific endonuclease/DNA structure) RONALD D. WESLEY Department of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, Colo. 80302 Communicated by David M. Prescott, November 27,1974 ABSTRACT The low-molecular-weight macronuclear renaturation kinetics of denatured macronuclear DNA are DNA of the hypotrichous ciliates Oxytricha, Euplotes, and the presence of a Paraurostyla contains inverted repetitious sequences. Up approximately second-order, indicating to 89% of the denatured macronuclear DNA molecules single DNA component with a complexity about 13 times form single-stranded circles due to intramolecular re- greater than Escherichia coli DNA (M. Lauth, J. Heumann, naturation of complementary sequences at or near the B. Spear, and D. M. Prescott, manuscript in preparation). ends of the same polynucleotide chain. Other ciliated (ini) The macronuclear DNA pieces possess a polarity, i.e., protozoans, such as Tetrahymena, with high-molecular- weight macronuclear DNA and an alternative mode of one end is different from the other, because a large region at macronuclear development, appear to lack these self- one end of each molecule melts at a slightly lower temperature complementary sequences. than the rest of the molecule, and because RNA polymerase The denatured macronuclear molecules of hypotrichs binds exclusively at only one end (7). are held in the circular conformation by a hydrogen- The experiments reported here demonstrate that single- bonded duplex region, which is probably less than 50 base pairs in length, since the duplex regions are not visible by strand nicks or gaps and inverted repetitious sequences are electron microscopy and since the circles in 0.12 M phos- other important structural features of macronuclear DNA. -
Uroleptus Willii Nov. Sp., a Euplanktonic Freshwater Ciliate
Uroleptus willii nov. sp., a euplanktonic freshwater ciliate (Dorsomarginalia, Spirotrichea, Ciliophora) with algal symbionts: morphological description including phylogenetic data of the small subunit rRNA gene sequence and ecological notes * Bettina S ONNTAG , Michaela C. S TRÜDER -K YPKE & Monika S UMMERER Abstract : The eUplanktonic ciliate Uroleptus willii nov. sp. (Dorsomarginalia) was discovered in the plankton of the oligo- mesotrophic PibUrgersee in AUstria. The morphology and infraciliatUre of this new species were stUdied in living cells as well as in specimens impregnated with protargol and the phylogenetic placement was inferred from the small sUbUnit ribosomal RNA (SSrRNA) gene seqUence. In vivo, U. willii is a grass-green fUsiform spirotrich of 100– 150 µm length. It bears aboUt 80–100 sym - biotic green algae and bUilds a lorica. Uroleptus willii is a freqUent species in the sUmmer ciliate assemblage in the Upper 12 m of PibUrgersee with a mean abUndance of aboUt 170 individUals l -1 from May throUgh November. The algal symbionts of this ciliate are known to synthesise Ultraviolet radiation – absorbing compoUnds. At present, the taxonomic position of Uroleptus has not yet been solved since the morphological featUres of the genUs agree well with those of the Urostyloidea, while the molecUlar analy - ses place the genUs within the Oxytrichidae. Uroleptus willii follows this pattern and groUps UnambigUoUsly with other Uroleptus species. We assign oUr new species to the Dorsomarginalia BERGER , 2006. However, this placement is preliminary since it is based on the assUmption that the genUs Uroleptus and the Oxytrichidae are both monophyletic taxa, and the monophyly of the latter groUp has still not been confirmed by molecUlar data. -
Bacterial and Archaeal Symbioses with Protists, Current Biology (2021), J.Cub.2021.05.049
Please cite this article in press as: Husnik et al., Bacterial and archaeal symbioses with protists, Current Biology (2021), https://doi.org/10.1016/ j.cub.2021.05.049 ll Review Bacterial and archaeal symbioses with protists Filip Husnik1,2,*, Daria Tashyreva3, Vittorio Boscaro2, Emma E. George2, Julius Lukes3,4, and Patrick J. Keeling2,* 1Okinawa Institute of Science and Technology, Okinawa, 904-0495, Japan 2Department of Botany, University of British Columbia, Vancouver, V6T 1Z4, Canada 3Institute of Parasitology, Biology Centre, Czech Academy of Sciences, Ceske Budejovice, 370 05, Czech Republic 4Faculty of Science, University of South Bohemia, Ceske Budejovice, 370 05, Czech Republic *Correspondence: fi[email protected] (F.H.), [email protected] (P.J.K.) https://doi.org/10.1016/j.cub.2021.05.049 SUMMARY Most of the genetic, cellular, and biochemical diversity of life rests within single-celled organisms—the pro- karyotes (bacteria and archaea) and microbial eukaryotes (protists). Very close interactions, or symbioses, between protists and prokaryotes are ubiquitous, ecologically significant, and date back at least two billion years ago to the origin of mitochondria. However, most of our knowledge about the evolution and functions of eukaryotic symbioses comes from the study of animal hosts, which represent only a small subset of eukary- otic diversity. Here, we take a broad view of bacterial and archaeal symbioses with protist hosts, focusing on their evolution, ecology, and cell biology, and also explore what functions (if any) the symbionts provide to their hosts. With the immense diversity of protist symbioses starting to come into focus, we can now begin to see how these systems will impact symbiosis theory more broadly. -
The Amoeboid Parabasalid Flagellate Gigantomonas Herculeaof
Acta Protozool. (2005) 44: 189 - 199 The Amoeboid Parabasalid Flagellate Gigantomonas herculea of the African Termite Hodotermes mossambicus Reinvestigated Using Immunological and Ultrastructural Techniques Guy BRUGEROLLE Biologie des Protistes, UMR 6023, CNRS and Université Blaise Pascal de Clermont-Ferrand, Aubière Cedex, France Summary. The amoeboid form of Gigantomonas herculea (Dogiel 1916, Kirby 1946), a symbiotic flagellate of the grass-eating subterranean termite Hodotermes mossambicus from East Africa, is observed by light, immunofluorescence and transmission electron microscopy. Amoeboid cells display a hyaline margin and a central granular area containing the nucleus, the internalized flagellar apparatus, and organelles such as Golgi bodies, hydrogenosomes, and food vacuoles with bacteria or wood particles. Immunofluorescence microscopy using monoclonal antibodies raised against Trichomonas vaginalis cytoskeleton, such as the anti-tubulin IG10, reveals the three long anteriorly-directed flagella, and the axostyle folded into the cytoplasm. A second antibody, 4E5, decorates the conspicuous crescent-shaped structure or cresta bordered by the adhering recurrent flagellum. Transmission electron micrographs show a microfibrillar network in the cytoplasmic margin and internal bundles of microfilaments similar to those of lobose amoebae that are indicative of cytoplasmic streaming. They also confirm the internalization of the flagella. The arrangement of basal bodies and fibre appendages, and the axostyle composed of a rolled sheet of microtubules are very close to that of the devescovinids Foaina and Devescovina. The very large microfibrillar cresta supporting an enlarged recurrent flagellum resembles that of Macrotrichomonas. The parabasal apparatus attached to the basal bodies is small in comparison to the cell size; this is probably related to the presence of many Golgi bodies supported by a striated fibre that are spread throughout the central cytoplasm in a similar way to Placojoenia and Mixotricha. -
Ciliate Biodiversity and Phylogenetic Reconstruction Assessed by Multiple Molecular Markers Micah Dunthorn University of Massachusetts Amherst, [email protected]
University of Massachusetts Amherst ScholarWorks@UMass Amherst Open Access Dissertations 9-2009 Ciliate Biodiversity and Phylogenetic Reconstruction Assessed by Multiple Molecular Markers Micah Dunthorn University of Massachusetts Amherst, [email protected] Follow this and additional works at: https://scholarworks.umass.edu/open_access_dissertations Part of the Life Sciences Commons Recommended Citation Dunthorn, Micah, "Ciliate Biodiversity and Phylogenetic Reconstruction Assessed by Multiple Molecular Markers" (2009). Open Access Dissertations. 95. https://doi.org/10.7275/fyvd-rr19 https://scholarworks.umass.edu/open_access_dissertations/95 This Open Access Dissertation is brought to you for free and open access by ScholarWorks@UMass Amherst. It has been accepted for inclusion in Open Access Dissertations by an authorized administrator of ScholarWorks@UMass Amherst. For more information, please contact [email protected]. CILIATE BIODIVERSITY AND PHYLOGENETIC RECONSTRUCTION ASSESSED BY MULTIPLE MOLECULAR MARKERS A Dissertation Presented by MICAH DUNTHORN Submitted to the Graduate School of the University of Massachusetts Amherst in partial fulfillment of the requirements for the degree of Doctor of Philosophy September 2009 Organismic and Evolutionary Biology © Copyright by Micah Dunthorn 2009 All Rights Reserved CILIATE BIODIVERSITY AND PHYLOGENETIC RECONSTRUCTION ASSESSED BY MULTIPLE MOLECULAR MARKERS A Dissertation Presented By MICAH DUNTHORN Approved as to style and content by: _______________________________________ -
Bacterial, Archaeal, and Eukaryotic Diversity Across Distinct Microhabitats in an Acid Mine Drainage Victoria Mesa, José.L.R
Bacterial, archaeal, and eukaryotic diversity across distinct microhabitats in an acid mine drainage Victoria Mesa, José.L.R. Gallego, Ricardo González-Gil, B. Lauga, Jesus Sánchez, Célia Méndez-García, Ana I. Peláez To cite this version: Victoria Mesa, José.L.R. Gallego, Ricardo González-Gil, B. Lauga, Jesus Sánchez, et al.. Bacterial, archaeal, and eukaryotic diversity across distinct microhabitats in an acid mine drainage. Frontiers in Microbiology, Frontiers Media, 2017, 8 (SEP), 10.3389/fmicb.2017.01756. hal-01631843 HAL Id: hal-01631843 https://hal.archives-ouvertes.fr/hal-01631843 Submitted on 14 Jan 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. fmicb-08-01756 September 9, 2017 Time: 16:9 # 1 ORIGINAL RESEARCH published: 12 September 2017 doi: 10.3389/fmicb.2017.01756 Bacterial, Archaeal, and Eukaryotic Diversity across Distinct Microhabitats in an Acid Mine Drainage Victoria Mesa1,2*, Jose L. R. Gallego3, Ricardo González-Gil4, Béatrice Lauga5, Jesús Sánchez1, Celia Méndez-García6† and Ana I. Peláez1† 1 Department of Functional Biology – IUBA, University of Oviedo, Oviedo, Spain, 2 Vedas Research and Innovation, Vedas CII, Medellín, Colombia, 3 Department of Mining Exploitation and Prospecting – IUBA, University of Oviedo, Mieres, Spain, 4 Department of Biology of Organisms and Systems – University of Oviedo, Oviedo, Spain, 5 Equipe Environnement et Microbiologie, CNRS/Université de Pau et des Pays de l’Adour, Institut des Sciences Analytiques et de Physico-chimie pour l’Environnement et les Matériaux, UMR5254, Pau, France, 6 Carl R. -
Phylogeny of the Ciliate Family Psilotrichidae (Protista
Boise State University ScholarWorks Biology Faculty Publications and Presentations Department of Biological Sciences 6-18-2019 Phylogeny of the Ciliate Family Psilotrichidae (Protista, Ciliophora), a Curious and Poorly- Known Taxon, with Notes on Two Algae-Bearing Psilotrichids from Guam, USA Xiaotian Luo Boise State University Jie A. Huang Chinese Academy of Sciences Lifang Li Shandog University Weibo Song Ocean University of China William A. Bourland Boise State University Publication Information Luo, Xiaotian; Huang, Jie A.; Li, Lifang; Song, Weibo; and Bourland, William A. (2019). "Phylogeny of the Ciliate Family Psilotrichidae (Protista, Ciliophora), a Curious and Poorly-Known Taxon, with Notes on Two Algae-Bearing Psilotrichids from Guam, USA". BMC Evolutionary Biology, 19, 125-1 - 125-15. http://dx.doi.org/10.1186/s12862-019-1450-z Luo et al. BMC Evolutionary Biology (2019) 19:125 https://doi.org/10.1186/s12862-019-1450-z RESEARCH ARTICLE Open Access Phylogeny of the ciliate family Psilotrichidae (Protista, Ciliophora), a curious and poorly-known taxon, with notes on two algae-bearing psilotrichids from Guam, USA Xiaotian Luo1,2, Jie A. Huang1, Lifang Li3, Weibo Song4 and William A. Bourland2* Abstract Background: The classification of the family Psilotrichidae, a curious group of ciliated protists with unique morphological and ontogenetic features, is ambiguous and poorly understood particularly due to the lack of molecular data. Hence, the systematic relationship between this group and other taxa in the subclass Hypotrichia remains unresolved. In this paper the morphology and phylogenetics of species from two genera of Psilotrichida are studied to shed new light on the phylogeny and species diversity of this group of ciliates. -
Morphology and Phylogeny of Four Marine Or Brackish Water Spirotrich Ciliates (Protozoa, Ciliophora) from China, with Descriptio
Available online at www.sciencedirect.com ScienceDirect European Journal of Protistology 72 (2020) 125663 Morphology and phylogeny of four marine or brackish water spirotrich ciliates (Protozoa, Ciliophora) from China, with descriptions of two new species Chunyu Liana,b, Xiaotian Luob, Alan Warrenc, Yan Zhaod,∗∗, Jiamei Jiange,f,g,∗ aInstitute of Evolution & Marine Biodiversity, Ocean University of China, Qingdao, 266003, China bKey Laboratory of Aquatic Biodiversity and Conservation of Chinese Academy of Sciences, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China cDepartment of Life Sciences, Natural History Museum, Cromwell Road, London, SW7 5BD, UK dCollege of Life Sciences, Capital Normal University, Beijing, 100048, China eShanghai Universities Key Laboratory of Marine Animal Taxonomy and Evolution, Shanghai Ocean University, Shanghai, 201306, China f Key Laboratory of Exploration and Utilization of Aquatic Genetic Resources, Shanghai Ocean University, Shanghai, 201306, China gNational Demonstration Center for Experimental Fisheries Science Education, Shanghai Ocean University, Shanghai, 201306, China Received 9 June 2019; received in revised form 25 November 2019; accepted 30 November 2019 Available online 7 December 2019 Abstract In this study, we investigated the morphology and molecular phylogeny of four marine or brackish spirotrichean cili- ates found in China, namely: Caryotricha sinica sp. nov., Prodiscocephalus orientalis sp. nov., P. cf. borrori, and Certesia quadrinucleata. Caryotricha sinica is characterized by its small size, seven cirral rows extending posteriorly to about 65% of the cell length, and four transverse cirri. Prodiscocephalus orientalis differs from its congeners mainly by the number of cirri in the “head” region and on the ventral side. The SSU rDNA sequence of P. -
Program 12 List of Posters 23 Abstracts – Symposia 27 Abstracts – Parallel Sessions 31 Abstracts – Posters 54 Social Program 74 List of Participants 77
1 2 Conference venues Protist2012 will take place in three different buildings. The main location is Vilhelm Bjerknes (building 13 on the map). This is the Life Science library at the campus and is where registration will take place at July 29. This is also the location for the posters and where lunches will be served. In the library there is access to computers and internet for all conferences participants. The presentations will be held in Georg Sverdrups (building 27) and Helga Engs (building 20) Helga Engs Georg Sverdrups Vilhelm Bjerknes Map and all photos: UiO 3 4 Index: General information 9 Program 12 List of posters 23 Abstracts – Symposia 27 Abstracts – Parallel sessions 31 Abstracts – Posters 54 Social program 74 List of participants 77 5 ISOP – International Society of Protistologists The Society is an international association of scientists devoted to research on single-celled eukaryotes, or protists. The ISOP promotes the presentation and discussion of new or important facts and problems in protistology, and works to provide resources for the promotion and advancement of this science. We are scientists from all over the world who perform research on protists, single- celled eukaryotic organisms. Individual areas of research involving protists encompass ecology, parasitology, biochemistry, physiology, genetics, evolution and many others. Our Society thus helps bring together researchers with different research foci and training. This multidisciplinary attitude is rather unique among scientific societies, and it results in an unparalleled forum for sharing and integrating a wide spectrum of scientific information on these fascinating and important organisms. ISOP executive meeting Sunday, July 29, 13:00 – 17:00 ISOP business meeting Tuesday, July 31, 17:30 Both meeting will be held in Vilhelm Bjerknes (building 13) room 209. -
Assessing the Utility of Hsp90 Gene for Inferring Evolutionary Relationships Within the Ciliate Subclass Hypotricha
Zhang et al. BMC Evolutionary Biology (2020) 20:86 https://doi.org/10.1186/s12862-020-01653-0 RESEARCH ARTICLE Open Access Assessing the utility of Hsp90 gene for inferring evolutionary relationships within the ciliate subclass Hypotricha (Protista, Ciliophora) Qi Zhang1,2†, Jiahui Xu1,2†, Alan Warren3, Ran Yang1, Zhuo Shen4,5* and Zhenzhen Yi1,2* Abstract Background: Although phylogenomic analyses are increasingly used to reveal evolutionary relationships among ciliates, relatively few nuclear protein-coding gene markers have been tested for their suitability as candidates for inferring phylogenies within this group. In this study, we investigate the utility of the heat-shock protein 90 gene (Hsp90) as a marker for inferring phylogenetic relationships among hypotrich ciliates. Results: A total of 87 novel Hsp90 gene sequences of 10 hypotrich species were generated. Of these, 85 were distinct sequences. Phylogenetic analyses based on these data showed that: (1) the Hsp90 gene amino acid trees are comparable to the small subunit rDNA tree for recovering phylogenetic relationships at the rank of class, but lack sufficient phylogenetic signal for inferring evolutionary relationships at the genus level; (2) Hsp90 gene paralogs are recent and therefore unlikely to pose a significant problem for recovering hypotrich clades; (3) definitions of some hypotrich orders and families need to be revised as their monophylies are not supported by various gene markers; (4) The order Sporadotrichida is paraphyletic, but the monophyly of the “core” Urostylida is supported; (5) both the subfamily Oxytrichinae and the genus Urosoma seem to be non-monophyletic, but monophyly of Urosoma is not rejected by AU tests. -
Epixenosomes: Symbionts of the Hypotrich Ciliate Euplotidium Itoi
Symbiosis, 26 (1999) 1-23 1 Balaban, Philadelphia/Rehovot Review article Epixenosomes: Symbionts of the Hypotrich Ciliate Euplotidium itoi GIOVANNA ROSA TI Dipartimento di Etologia, Ecologia, Evoluzione, Unioersita di Pisa, via A. Volta 4, 56126 Pisa, Italy. Tel. +39-50-500840, Fax. +39-50-24653 Received October 20, 1997; Accepted May 9, 1998 Abstract Peculiar episymbionts (epixenosomes) are located on the surface of the marine ciliate Euplotidium itoi. Reproduction, redistribution between the two offspring Euplotidium cells, and the developmental transformation (maturation) of epixenosomes are well coordinated with the ciliate's reproductive cycle. Not only does the ciliate strongly influence the epixenosomes, but the epixenosomes influence the hypotrich. During their reproductive stage epixenosomes have a bacteria-like morphology and divide like prokaryotes, but when mature they have both prokaryotic and eukaryotic traits. Although they lack a membrane-bounded nucleus, their DNA hybridizes with eukaryotic rDNA probes obtained from organisms belonging to three different kingdoms (Protista, Animalia, Plantae). Their DNA hybridizes with the gene encoding for ~ tubulin in another related ciliate (Euplotes crassus). They lack mitochondria and other membrane-bounded organelles, but display their own distinctive cell compartmentalization. Tubules, present in their cytoplasm, positively react with different antitubulin antibodies. The most prominent structure of mature epixenosomes is their unique sophisticated extrusive apparatus that shares features of both prokaryotes and eukaryotes. A 40 µm long tubular process terminates with a "head" mainly consisting of the epixenosome genetic material. The ejected tubes, detached from the ciliate host, are rapidly deployed into the surroundings. Ejection is triggered by the detection of external signals through membrane receptors followed by activation of an adenylate cyclase-cyclic AMP system. -
Morphology and Molecular Phylogeny of a New Hypotrich Ciliate, Anteholosticha Songi Nov. Spec., and an American Population of Ho
Available online at www.sciencedirect.com ScienceDirect European Journal of Protistology 72 (2020) 125646 Morphology and molecular phylogeny of a new hypotrich ciliate, Anteholosticha songi nov. spec., and an American population of Holosticha pullaster (Müller, 1773) Foissner et al., 1991 (Ciliophora, Hypotrichia) Lingyun Chena,1, Jingyi Dongb,1, Weining Wuc,1, Yuanyuan Xina, Alan Warrend, Yingzhi Ninga,∗, Yan Zhaoe,∗ aLaboratory of Microbiota, College of Life Science, Northwest Normal University, Lanzhou 730070, China bInstitute of Evolution and Marine Biodiversity, Ocean University of China, Qingdao 266003, China cCollege of Resources and Environmental Sciences, Gansu Agricultural University, Lanzhou 730070, China dDepartment of Life Sciences, Natural History Museum, London SW7 5BD, UK eCollege of Life Sciences, Capital Normal University, Beijing 100048, China Received 29 August 2019; received in revised form 19 October 2019; accepted 21 October 2019 Available online 31 October 2019 Abstract A new urostylid ciliate, Anteholosticha songi nov. spec., isolated from forest soil in Tibet, and an American population of Holosticha pullaster (Müller, 1773) Foissner et al., 1991, isolated from a freshwater pond in the USA, are investigated in terms of their morphology, ontogenesis, and molecular biology. Anteholosticha songi nov. spec. is characterized by a slender to ellipsoidal body measuring 160–205 × 40–55 m in vivo; rod-shaped yellowish cortical granules arranged in irregular short rows; four dorsal kineties; adoral zone consisting of 35–40 membranelles; three frontal, one buccal, one parabuccal, two frontoterminal, two pretransverse, and four to six transverse cirri and 14–25 midventral pairs; 12–22 ellipsoidal macronuclear nodules longitudinally arranged in pairs left of cell mid-line.