BARBARA MCCLINTOCK June 16, 1902–September 2, 1992
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GENETICS and GENOMICS Ed
GENETICS AND GENOMICS Ed. Csaba Szalai, PhD GENETICS AND GENOMICS Editor: Csaba Szalai, PhD, university professor Authors: Chapter 1: Valéria László Chapter 2, 3, 4, 6, 7: Sára Tóth Chapter 5: Erna Pap Chapter 8, 9, 10, 11, 12, 13, 14: Csaba Szalai Chapter 15: András Falus and Ferenc Oberfrank Keywords: Mitosis, meiosis, mutations, cytogenetics, epigenetics, Mendelian inheritance, genetics of sex, developmental genetics, stem cell biology, oncogenetics, immunogenetics, human genomics, genomics of complex diseases, genomic methods, population genetics, evolution genetics, pharmacogenomics, nutrigenetics, gene environmental interaction, systems biology, bioethics. Summary The book contains the substance of the lectures and partly of the practices of the subject of ‘Genetics and Genomics’ held in Semmelweis University for medical, pharmacological and dental students. The book does not contain basic genetics and molecular biology, but rather topics from human genetics mainly from medical point of views. Some of the 15 chapters deal with medical genetics, but the chapters also introduce to the basic knowledge of cell division, cytogenetics, epigenetics, developmental genetics, stem cell biology, oncogenetics, immunogenetics, population genetics, evolution genetics, nutrigenetics, and to a relative new subject, the human genomics and its applications for the study of the genomic background of complex diseases, pharmacogenomics and for the investigation of the genome environmental interactions. As genomics belongs to sytems biology, a chapter introduces to basic terms of systems biology, and concentrating on diseases, some examples of the application and utilization of this scientific field are also be shown. The modern human genetics can also be associated with several ethical, social and legal issues. The last chapter of this book deals with these issues. -
Chromatid Cohesion During Mitosis: Lessons from Meiosis
Journal of Cell Science 112, 2607-2613 (1999) 2607 Printed in Great Britain © The Company of Biologists Limited 1999 JCS0467 COMMENTARY Chromatid cohesion during mitosis: lessons from meiosis Conly L. Rieder1,2,3 and Richard Cole1 1Wadsworth Center, New York State Dept of Health, PO Box 509, Albany, New York 12201-0509, USA 2Department of Biomedical Sciences, State University of New York, Albany, New York 12222, USA 3Marine Biology Laboratory, Woods Hole, MA 02543-1015, USA *Author for correspondence (e-mail: [email protected]) Published on WWW 21 July 1999 SUMMARY The equal distribution of chromosomes during mitosis and temporally separated under various conditions. Finally, we meiosis is dependent on the maintenance of sister demonstrate that in the absence of a centromeric tether, chromatid cohesion. In this commentary we review the arm cohesion is sufficient to maintain chromatid cohesion evidence that, during meiosis, the mechanism underlying during prometaphase of mitosis. This finding provides a the cohesion of chromatids along their arms is different straightforward explanation for why mutants in proteins from that responsible for cohesion in the centromere responsible for centromeric cohesion in Drosophila (e.g. region. We then argue that the chromatids on a mitotic ord, mei-s332) disrupt meiosis but not mitosis. chromosome are also tethered along their arms and in the centromere by different mechanisms, and that the Key words: Sister-chromatid cohesion, Mitosis, Meiosis, Anaphase functional action of these two mechanisms can be onset INTRODUCTION (related to the fission yeast Cut1P; Ciosk et al., 1998). When Pds1 is destroyed Esp1 is liberated, and this event somehow The equal distribution of chromosomes during mitosis is induces a class of ‘glue’ proteins, called cohesins (e.g. -
Mitosis Vs. Meiosis
Mitosis vs. Meiosis In order for organisms to continue growing and/or replace cells that are dead or beyond repair, cells must replicate, or make identical copies of themselves. In order to do this and maintain the proper number of chromosomes, the cells of eukaryotes must undergo mitosis to divide up their DNA. The dividing of the DNA ensures that both the “old” cell (parent cell) and the “new” cells (daughter cells) have the same genetic makeup and both will be diploid, or containing the same number of chromosomes as the parent cell. For reproduction of an organism to occur, the original parent cell will undergo Meiosis to create 4 new daughter cells with a slightly different genetic makeup in order to ensure genetic diversity when fertilization occurs. The four daughter cells will be haploid, or containing half the number of chromosomes as the parent cell. The difference between the two processes is that mitosis occurs in non-reproductive cells, or somatic cells, and meiosis occurs in the cells that participate in sexual reproduction, or germ cells. The Somatic Cell Cycle (Mitosis) The somatic cell cycle consists of 3 phases: interphase, m phase, and cytokinesis. 1. Interphase: Interphase is considered the non-dividing phase of the cell cycle. It is not a part of the actual process of mitosis, but it readies the cell for mitosis. It is made up of 3 sub-phases: • G1 Phase: In G1, the cell is growing. In most organisms, the majority of the cell’s life span is spent in G1. • S Phase: In each human somatic cell, there are 23 pairs of chromosomes; one chromosome comes from the mother and one comes from the father. -
Barbara Mcclintock's World
Barbara McClintock’s World Timeline adapted from Dolan DNA Learning Center exhibition 1902-1908 Barbara McClintock is born in Hartford, Connecticut, the third of four children of Sarah and Thomas Henry McClintock, a physician. She spends periods of her childhood in Massachusetts with her paternal aunt and uncle. Barbara at about age five. This prim and proper picture betrays the fact that she was, in fact, a self-reliant tomboy. Barbara’s individualism and self-sufficiency was apparent even in infancy. When Barbara was four months old, her parents changed her birth name, Eleanor, which they considered too delicate and feminine for such a rugged child. In grade school, Barbara persuaded her mother to have matching bloomers (shorts) made for her dresses – so she could more easily join her brother Tom in tree climbing, baseball, volleyball, My father tells me that at the and football. age of five I asked for a set of tools. He My mother used to did not get me the tools that you get for an adult; he put a pillow on the floor and give got me tools that would fit in my hands, and I didn’t me one toy and just leave me there. think they were adequate. Though I didn’t want to tell She said I didn’t cry, didn’t call for him that, they were not the tools I wanted. I wanted anything. real tools not tools for children. 1908-1918 McClintock’s family moves to Brooklyn in 1908, where she attends elementary and secondary school. In 1918, she graduates one semester early from Erasmus Hall High School in Brooklyn. -
I. Hox Genes 2
School ofMedicine Oregon Health Sciences University CERTIFICATE OF APPROVAL This is certify that the Ph.D. thesis of WendyKnosp has been approved Mentor/ Advisor ~ Member Member QUANTITATIVE ANALYSIS OF HOXA13 FUNCTION IN THE DEVELOPING LIMB By Wendy M. lt<nosp A DISSERTATION Presented to the Department of Molecular and Medical Genetics and the Oregon Health & Science University School of Medicine in partial fulfillment of the requirements for the degree of Doctor of Philosophy August 2006 TABLE OF CONTENTS LIST OF FIGURES iv LIST OF ABBREVIATIONS vii ACKNOWLEDGEMENTS X ABSTRACT xii CHAPTER 1: Introduction 1 I. Hox genes 2 A. Discovery of Hox genes in Drosophila melanogaster 2 B. Hox cluster colinearity and conservation 7 C. Human Hox mutations 9 D. Hoxa13: HFGS and Guttmacher syndromes 10 II. The Homeodomain 12 A. Homeodomain structure 12 B. DNA binding 14 Ill. Limb development 16 A. Patterning of the limb axes 16 B. Digit formation 20 C. lnterdigital programmed cell death 21 IV. BMPs and limb development 23 A. BMP signaling in the limb 23 B. BMP target genes 27 V. Hoxa13 and embryonic development 30 A. The Hoxa13-GFP mouse model 30 B. Hoxa13 mutant phenotypes 34 C. HOXA 13 homeodomain 35 D. HOXA 13 protein-protein interactions 36 E. HOXA 13 target genes 37 VI. Hypothesis and Rationale 39 CHAPTER 2: HOXA13 regulates Bmp2 and Bmp7 40 I. Abstract 42 II. Introduction 43 Ill. Results 46 IV. Discussion 69 v. Materials and Methods 75 VI. Acknowledgements 83 11 CHAPTER 3: Quantitative analysis of HOXA13 function 84 HOXA 13 regulation of Sostdc1 I. -
The Contributions of George Beadle and Edward Tatum
| PERSPECTIVES Biochemical Genetics and Molecular Biology: The Contributions of George Beadle and Edward Tatum Bernard S. Strauss1 Department of Molecular Genetics and Cell Biology, The University of Chicago, Chicago, Illinois 60637 KEYWORDS George Beadle; Edward Tatum; Boris Ephrussi; gene action; history It will concern us particularly to take note of those cases in Genetics in the Early 1940s which men not only solved a problem but had to alter their mentality in the process, or at least discovered afterwards By the end of the 1930s, geneticists had developed a sophis- that the solution involved a change in their mental approach ticated, self-contained science. In particular, they were able (Butterfield 1962). to predict the patterns of inheritance of a variety of charac- teristics, most morphological in nature, in a variety of or- EVENTY-FIVE years ago, George Beadle and Edward ganisms although the favorites at the time were clearly Tatum published their method for producing nutritional S Drosophila andcorn(Zea mays). These characteristics were mutants in Neurospora crassa. Their study signaled the start of determined by mysterious entities known as “genes,” known a new era in experimental biology, but its significance is to be located at particular positions on the chromosomes. generally misunderstood today. The importance of the work Furthermore, a variety of peculiar patterns of inheritance is usually summarized as providing support for the “one gene– could be accounted for by alteration in chromosome struc- one enzyme” hypothesis, but its major value actually lay both ture and number with predictions as to inheritance pattern in providing a general methodology for the investigation of being quantitative and statistical. -
Overview of Meiosis
Sexual Reproduction and Meiosis Chapter 11 Overview of Meiosis Meiosis is a form of cell division that leads to the production of gametes. gametes: egg cells and sperm cells -contain half the number of chromosomes of an adult body cell Adult body cells (somatic cells) are diploid, containing 2 sets of chromosomes. Gametes are haploid, containing only 1 set of chromosomes. 2 Overview of Meiosis Sexual reproduction includes the fusion of gametes (fertilization) to produce a diploid zygote. Life cycles of sexually reproducing organisms involve the alternation of haploid and diploid stages. Some life cycles include longer diploid phases, some include longer haploid phases. 3 1 4 5 6 2 7 Features of Meiosis Meiosis includes two rounds of division – meiosis I and meiosis II. During meiosis I, homologous chromosomes (homologues) become closely associated with each other. This is synapsis. Proteins between the homologues hold them in a synaptonemal complex. 8 9 3 Features of Meiosis Crossing over: genetic recombination between non-sister chromatids -physical exchange of regions of the chromatids chiasmata: sites of crossing over The homologues are separated from each other in anaphase I. 10 Features of Meiosis Meiosis involves two successive cell divisions with no replication of genetic material between them. This results in a reduction of the chromosome number from diploid to haploid. 11 12 4 The Process of Meiosis Prophase I: -chromosomes coil tighter -nuclear envelope dissolves -homologues become closely associated in synapsis -crossing over -
Genes, Genomes and Genetic Analysis
© Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION UNIT 1 © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FORDefining SALE OR DISTRIBUTION and WorkingNOT FOR SALE OR DISTRIBUTION with Genes © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION Chapter 1 Genes, Genomes, and Genetic Analysis Chapter 2 DNA Structure and Genetic Variation © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Molekuul/Science Photo Library/Getty Images. © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC. NOT FOR SALE OR DISTRIBUTION 9781284136609_CH01_Hartl.indd 1 08/11/17 8:50 am © Jones & Bartlett Learning, LLC -
Barbara Mcclintock
Barbara McClintock Lee B. Kass and Paul Chomet Abstract Barbara McClintock, pioneering plant geneticist and winner of the Nobel Prize in Physiology or Medicine in 1983, is best known for her discovery of transposable genetic elements in corn. This chapter provides an overview of many of her key findings, some of which have been outlined and described elsewhere. We also provide a new look at McClintock’s early contributions, based on our readings of her primary publications and documents found in archives. We expect the reader will gain insight and appreciation for Barbara McClintock’s unique perspective, elegant experiments and unprecedented scientific achievements. 1 Introduction This chapter is focused on the scientific contributions of Barbara McClintock, pioneering plant geneticist and winner of the Nobel Prize in Physiology or Medicine in 1983 for her discovery of transposable genetic elements in corn. Her enlightening experiments and discoveries have been outlined and described in a number of papers and books, so it is not the aim of this report to detail each step in her scientific career and personal life but rather highlight many of her key findings, then refer the reader to the original reports and more detailed reviews. We hope the reader will gain insight and appreciation for Barbara McClintock’s unique perspective, elegant experiments and unprecedented scientific achievements. Barbara McClintock (1902–1992) was born in Hartford Connecticut and raised in Brooklyn, New York (Keller 1983). She received her undergraduate and graduate education at the New York State College of Agriculture at Cornell University. In 1923, McClintock was awarded the B.S. -
1 Sister Chromatids Are Often Incompletely Cohesed In
Genetics: Published Articles Ahead of Print, published on September 12, 2005 as 10.1534/genetics.105.048363 Sister chromatids are often incompletely cohesed in meristematic and endopolyploid interphase nuclei of Arabidopsis thaliana Veit Schubert, Marco Klatte, Ales Pecinka, Armin Meister, Zuzana Jasencakova1, Ingo Schubert2 Institute of Plant Genetics and Crop Plant Research (IPK), D-06466 Gatersleben, Germany 1present address: Dulbecco Telethon Institute of Genetics & Biophysics CNR, Epigenetics & Genome Reprogramming Laboratory, I-80131 Napoli, Italy 1 Running head: Sister chromatid alignment in Arabidopsis Keywords: Arabidopsis thaliana, sister chromatid cohesion, meristematic and endopolyploid nuclei, fluorescent in situ hybridization (FISH), 2Corresponding author: Ingo Schubert, Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, D-06466 Gatersleben, Germany Telephone: +49-39482-5239 Fax: +49-39482-5137 e-mail: [email protected] 2 ABSTRACT We analysed whether sister chromatids are continuously cohesed in meristematic and endopolyploid Arabidopsis interphase nuclei by studying sister chromatid alignment at various chromosomal positions. FISH with individual BACs to flow-sorted 4C root and leaf nuclei frequently yielded more than two hybridization signals indicating incomplete or lacking sister chromatid alignment. Up to 100% of 8C, 16C and 32C nuclei showed no sister chromatid alignment at defined positions. Simultaneous FISH with BACs from different chromosomal positions revealed more frequent sister chromatid alignment in terminal than in mid arm positions. Centromeric positions were mainly aligned up to a ploidy level of 16C but became separated or dispersed in 32C nuclei. DNA hypomethylation (of the whole genome) and transcriptional activity (at FWA gene position) did not impair sister chromatid alignment. Only 6.1% of 4C leaf nuclei showed sister chromatid separation of entire chromosome 1 top arm territories. -
The Street Railway Journal
; OCT 2 1890 I NEW YORK: I I CHICAGO* ) Vol. i. liberty Street.) October, 1885. I 32 \12 Lakeside Building./ NO. 12. President Calvin A. Richards. advance of the times; to do that, has now family circle engrossing all his time out- become a motto with him and guides him side of business hours. The subject of our sketch, President of in all his railroad transactions. the American Street Railway Association The railroad which he represents is now The Car Timer's Last Gasp. and of the Metropolitan Railroad, of Bos- probably the largest street railroad in the ton, was born in Dorchester Mass., fifty- world in equipment, in miles of track, and "Timers is like machines," said a gray, seven years ago, and received his educa- in the number of passengers carried. oracular driver on the Third avenue line. tion in the public schools of "Timers is like machines. Boston. His business train- They gets so used to timin' ing was received with his that they can't let up, but father, an old and honored keeps along at it sleepin' or merchant of Boston. wakin'. If some o' them Mr. Richards was en- fellers was a-dyin' they'd gaged in business, him- want to spot the ticker afore self, until 1872, when he peggin' out, just to see if retired from active work, death was up to the scratch. and with his family, made Why, there was Pete Long a long visit to Europe. On —the allfiredest particular- his return from abroad, he ist man I ever see. -
Increased Aurora B Activity Causes Continuous Disruption Of
Increased Aurora B activity causes continuous PNAS PLUS disruption of kinetochore–microtubule attachments and spindle instability Marta Muñoz-Barreraa,b and Fernando Monje-Casasa,c,1 aAndalusian Center for Molecular Biology and Regenerative Medicine (CABIMER), 41092 Seville, Spain; bSpanish National Research Council, 41092 Seville, Spain; and cDepartment of Genetics, University of Seville, 41092 Seville, Spain Edited* by Angelika Amon, Massachusetts Institute of Technology, Cambridge, MA, and approved August 14, 2014 (received for review May 2, 2014) Aurora B kinase regulates the proper biorientation of sister chroma- of cytokinesis until all chromosomes have cleared the cleavage plane tids during mitosis. Lack of Aurora B kinase function results in the so as to avoid chromosome breakage during abscission (15–17). inability to correct erroneous kinetochore–microtubule attachments The absence of Aurora B activity leads to massive aneuploidy and gives rise to aneuploidy. Interestingly, increased Aurora B activ- problems because of the inability to resolve incorrect KT–MT ity also leads to problems with chromosome segregation, and over- attachments. Interestingly, however, not only the absence of expression of this kinase has been observed in various types of Aurora B but also its overexpression poses an important threat cancer. However, little is known about the mechanisms by which for cell viability, and increased levels of this kinase have been an increase in Aurora B kinase activity can impair mitotic progression associated with various types of cancer (18–20). In mammals, and cell viability. Here, using a yeast model, we demonstrate that elevated levels of Aurora B kinase cause defects in chromosome increased Aurora B activity as a result of the overexpression of the segregation and in the inhibition of cytokinesis (21), but little is Aurora B and inner centromere protein homologs triggers defects in known about the molecular mechanisms that underlie these phe- chromosome segregation by promoting the continuous disruption of notypes.