Spectrum of Light As a Determinant of Plant Functioning: a Historical Perspective
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Light-Induced Psba Translation in Plants Is Triggered by Photosystem II Damage Via an Assembly-Linked Autoregulatory Circuit
Light-induced psbA translation in plants is triggered by photosystem II damage via an assembly-linked autoregulatory circuit Prakitchai Chotewutmontria and Alice Barkana,1 aInstitute of Molecular Biology, University of Oregon, Eugene, OR 97403 Edited by Krishna K. Niyogi, University of California, Berkeley, CA, and approved July 22, 2020 (received for review April 26, 2020) The D1 reaction center protein of photosystem II (PSII) is subject to mRNA to provide D1 for PSII repair remain obscure (13, 14). light-induced damage. Degradation of damaged D1 and its re- The consensus view in recent years has been that psbA transla- placement by nascent D1 are at the heart of a PSII repair cycle, tion for PSII repair is regulated at the elongation step (7, 15–17), without which photosynthesis is inhibited. In mature plant chloro- a view that arises primarily from experiments with the green alga plasts, light stimulates the recruitment of ribosomes specifically to Chlamydomonas reinhardtii (Chlamydomonas) (18). However, we psbA mRNA to provide nascent D1 for PSII repair and also triggers showed recently that regulated translation initiation makes a a global increase in translation elongation rate. The light-induced large contribution in plants (19). These experiments used ribo- signals that initiate these responses are unclear. We present action some profiling (ribo-seq) to monitor ribosome occupancy on spectrum and genetic data indicating that the light-induced re- cruitment of ribosomes to psbA mRNA is triggered by D1 photo- chloroplast open reading frames (ORFs) in maize and Arabi- damage, whereas the global stimulation of translation elongation dopsis upon shifting seedlings harboring mature chloroplasts is triggered by photosynthetic electron transport. -
Evolution of Photochemical Reaction Centres
bioRxiv preprint doi: https://doi.org/10.1101/502450; this version posted December 20, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Evolution of photochemical reaction 2 centres: more twists? 3 4 Tanai Cardona, A. William Rutherford 5 Department of Life Sciences, Imperial College London, London, UK 6 Correspondence to: [email protected] 7 8 Abstract 9 The earliest event recorded in the molecular evolution of photosynthesis is the structural and 10 functional specialisation of Type I (ferredoxin-reducing) and Type II (quinone-reducing) reaction 11 centres. Here we point out that the homodimeric Type I reaction centre of Heliobacteria has a Ca2+- 12 binding site with a number of striking parallels to the Mn4CaO5 cluster of cyanobacterial 13 Photosystem II. This structural parallels indicate that water oxidation chemistry originated at the 14 divergence of Type I and Type II reaction centres. We suggests that this divergence was triggered by 15 a structural rearrangement of a core transmembrane helix resulting in a shift of the redox potential 16 of the electron donor side and electron acceptor side at the same time and in the same redox direction. 17 18 Keywords 19 Photosynthesis, Photosystem, Water oxidation, Oxygenic, Anoxygenic, Reaction centre 20 21 Evolution of Photosystem II 22 There is no consensus on when and how oxygenic photosynthesis originated. Both the timing and the 23 evolutionary mechanism are disputed. -
Chapter 3 the Title and Subtitle of This Chapter Convey a Dual Meaning
3.1. Introduction Chapter 3 The title and subtitle of this chapter convey a dual meaning. At first reading, the subtitle Photosynthetic Reaction might seem to indicate that the topic of the structure, function and organization of Centers: photosynthetic reaction centers is So little time, so much to do exceedingly complex and that there is simply insufficient time or space in this brief article to cover the details. While this is John H. Golbeck certainly the case, the subtitle is Department of Biochemistry additionally meant to convey the idea that there is precious little time after the and absorption of a photon to accomplish the Molecular Biology task of preserving the energy in the form of The Pennsylvania State University stable charge separation. University Park, PA 16802 USA The difficulty is there exists a fundamental physical limitation in the amount of time available so that a photochemically induced excited state can be utilized before the energy is invariably wasted. Indeed, the entire design philosophy of biological reaction centers is centered on overcoming this physical, rather than chemical or biological, limitation. In this chapter, I will outline the problem of conserving the free energy of light-induced charge separation by focusing on the following topics: 3.2. Definition of the problem: the need to stabilize a charge-separated state. 3.3. The bacterial reaction center: how the cofactors and proteins cope with this problem in a model system. 3.4. Review of Marcus theory: what governs the rate of electron transfer in proteins? 3.5. Photosystem II: a variation on a theme of the bacterial reaction center. -
Chlorophyll Biosynthesis
Chlorophyll Biosynthesis: Various Chlorophyllides as Exogenous Substrates for Chlorophyll Synthetase Jürgen Benz and Wolfhart Rüdiger Botanisches Institut, Universität München, Menziger Str. 67, D-8000 München 19 Z. Naturforsch. 36 c, 51 -5 7 (1981); received October 10, 1980 Dedicated to Professor Dr. H. Merxmüller on the Occasion of His 60th Birthday Chlorophyllides a and b, Protochlorophyllide, Bacteriochlorophyllide a, 3-Acetyl-3-devinylchlo- rophyllide a, Pyrochlorophyllide a, Pheophorbide a The esterification of various chlorophyllides with geranylgeranyl diphosphate was investigated as catalyzed by the enzyme chlorophyll synthetase. The enzyme source was an etioplast membrane fraction from etiolated oat seedlings ( Avena sativa L.). The following chlorophyllides were prepared from the corresponding chlorophylls by the chlorophyllase reaction: chlorophyllide a (2) and b (4), bacteriochlorophyllide a (5), 3-acetyl-3-devinylchlorophyllide a (6), and pyro chlorophyllide a (7). The substrates were solubilized with cholate which reproducibly reduced the activity of chlorophyll synthetase by 40-50%. It was found that the following compounds were good substrates for chlorophyll synthetase: chlorophyllide a and b, 3-acetyl-3-devinylchloro- phyllide a, and pyrochlorophyllide a. Only a poor or no reaction was found with protochloro phyllide, pheophorbide a, and bacteriochlorophyllide. This difference of reactivity was not due to distribution differences of the substrates between solution and pelletable membrane fraction. Furthermore, no interference between good and poor substrate was detected. Structural features necessary for chlorophyll synthetase substrates were discussed. Introduction Therefore no exogenous 2 was applied. The only substrate was 2 formed by photoconversion of endo The last steps of chlorophyll a (Chi a) biosynthe genous Protochlide (1) in the etioplast membrane. -
Phototactic Purple Bacteria Extinction Or Miscalculation?
SCIENTIFIC CORRESPONDENCE the light source through the gradient of Phototactic purple decreasing light intensity; on the other Extinction or hand, if their movement is scotophobic, bacteria the colony should move in the opposite miscalculation? direction. R. centenum swarm colonies SIR - In 1883 T. Engelmann! discovered irradiated laterally with infrared light in SIR - Heywood et al. I have discussed that purple photosynthetic bacteria re fact moved rapidly towards the light uncertainties in modelling rates. One way verse their swimming direction when the source, as for positive phototaxis. to check a predictive model's validity is to light intensity is suddenly reduced. He Anoxygenic photosynthetic bacteria see how well it predicts past events. In this described this photosensory effect as and the oxygenic cyanobacteria and algae case, the species-area relation model does "Schreckbewegung" ('movement of share several similar physiological re fairly well in predicting the number of fright'), but it is more properly designated quirements, so it is not surprising that bird and mammal extinctions during the as a scotophobic response, past 500 years in the United States and that is, a fear of darkness. a Canada .. Scotophobic behaviour is Time (min) Infrared Here I consider species extirpated fol typical of motile purple bac lowing habitat destruction initiated by 2 teria, is independent of the o Europeans in North America , combined direction of illumination, with currently endangered or threatened 3 and does not occur if the 30 species , to check if species loss is con light intensity is reduced ..'Q" gruent with habitat loss. Although exact only gradually. By contrast, 60 figures are difficult to come by, I take as oxygenic cyanobacteria and 20% the amount of land removed from algae exhibit phototactic re- 120 native North American mammal and bird 4 sponses, that is, oriented habitats . -
Phototaxis and Membrane Potential in the Photosynthetic Bacterium Rhodospirillum Rubrum
JOURNAL OF BACTEIUOLOGY, July 1977, p. 34-41 Vol. 131, No. 1 Copyright © 1977 American Society for Microbiology Printed in U.S.A. Phototaxis and Membrane Potential in the Photosynthetic Bacterium Rhodospirillum rubrum SHIGEAKI HARAYAMA* AND TETSUO IINO Laboratory of Genetics, Faculty of Science, University of Tokyo, Hongo, Tokyo 113, Japan Received for publication 23 February 1977 Cells of the photosynthetic bacterium Rhodospirillum rubrum cultivated anaerobically in light show phototaxis. The behavior of individual cells in response to the phenomenon is reversal(s) of the swimming direction when the intensity of the light available to them abruptly decreases. The tactic response was inhibited by antimycin, an inhibitor of the photosynthetic electron transfer system. The inhibitory effect of antimycin was overcome by phenazine metho- sulfate. Motility of the cells was not impaired by antimycin under aerobic conditions. Valinomycin plus potassium also inhibited their phototactic re- sponse; however, valinomycin or potassium alone had no effect. A change in membrane potential of the cells was measured as an absorbance change of carotenoid. Changes in the membrane potential caused by "on-off' light were prevented by antimycin and by valinomycin plus potassium, but not by antimy- cin plus phenazine methosulfate nor valinomycin or potassium alone. The results indicated that the phototactic response of R. rubrum is mediated by a sudden change in electron flow in the photosynthetic electron transfer system, and that the membrane potential plays an important role in manifestation of the re- sponse. Bacterial phototaxis has been observed in systems. The chemotactic behavior of individ- photosynthetic bacteria (6, 22) and in Halobac- ual cells ofE. -
Schmitt-2011-Thalassas.Pdf
Thalassas, 27 (2): 225-238 An International Journal of Marine Sciences BEHAVIORAL ADAPTATIONS IN RELATION TO LONG-TERM RETENTION OF ENDOSYMBIOTIC CHLOROPLASTS IN THE SEA SLUG Elysia timida (OPISTHOBRANCHIA, SACOGLOSSA) VALÉRIE SCHMITT (1, 2) & HEIKE WÄGELE (1) Key words: Sacoglossa, endosymbiosis, chloroplasts, retention, phototaxis, photobehavior. ABSTRACT in basins with running seawater and natural light through a glass window. Behavioral observations A comparative study was performed to analyze and PAM-measurements were performed in 4 time differences in evolutionary adaptations in two sea intervals in the course of an observation day in slug species, Elysia timida with long-term retention of daylight and dark-adapted conditions. Phototactic endosymbiotic chloroplasts and Thuridilla hopei with behavior was found to be present in both compared short-term retention of endosymbiotic chloroplasts. species, although the phototactic reaction was Both sacoglossan species stem from the same habitat more pronounced in E. timida. Phototaxis was also and show similar body sizes and structures with observed in juvenile E. timida before sequestration parapodial lobes whose position can be actively of first Acetabularia-chloroplasts, which indicates varied by the slugs. Ethological analyses were carried no direct current influence of the endosymbiotic out concerning the positioning of parapodia and chloroplasts. Other parameters, however, like the other photobehavioral parameters like phototaxis. In positioning of the parapodia, were observed to parallel, photosynthetic activity was measured with be significantly different between the long-term a Pulse Amplitude Modulated Fluorometer (PAM). and short-term storing species. While an adapted In total, 252 E. timida individuals and 63 T. hopei changing of the parapodia’s position in reaction to individuals were included in the analysis. -
A Comedy of Scientific Errors BOVINES
SACRED A COMEDY OF SCIENTIFIC ERRORS BOVINES DOUGLAS ALLCHIN, DEPARTMENT EDITOR William Shakespeare may well have foreshadowed the modern television experiment with balm, groundsel, and spinach. All modified the air to sitcom. His comic misadventures were expertly crafted. In A Comedy of support sustained burning. Animals, too, could breathe longer in the Errors, for example, twins (with twin servants), each separated at birth, treated air. Plants, Priestley had found, could restore the “goodness” of converge unbeknownst to each other in the same town. Mistaken iden- the air depleted by respiration or combustion. American correspondent tity leads to miscommunication. More mistaken identity follows, with Benjamin Franklin immediately perceived the global implications: plants more misdelivered messages and yet more misinterpretations. Hilarious help restore the atmosphere that humans and other animals foul. The consequences ensue. It is a stock comedic formula in modern entertain- system ensures our survival. That view fit neatly with Priestley’s religious ment. A character first makes an unintentional error. Then ironically, in belief in an intentionally designed (and rational) natural world. It was a trying to correct it, things only get laughably worse. remarkable discovery. For this and other work on airs, the Royal Society Science, we imagine, is safeguarded against such embarrassing in 1772 awarded Priestley the Copley Medal, then the most prestigious episodes. In the lore of scientists, echoed among teachers, science is honor in science. “self-correcting.” Replication, in particular, ensures that errors are Others were eager to build on Priestley’s discovery about plants and exposed for what they are. Research promptly returns to its fruitful tra- the restoration of air. -
Which Regions of the Electromagnetic Spectrum Do Plants Use to Drive Photosynthesis?
Which regions of the electromagnetic spectrum do plants use to drive photosynthesis? Green Light: The Forgotten Region of the Spectrum. In the past, plant physiologists used green light as a safe light during experiments that required darkness. It was assumed that plants reflected most of the green light and that it did not induce photosynthesis. Yes, plants do reflect green light but human vision sensitivity peaks in the green region at about 560 nm, which allows us to preferentially see green. Plants do not reflect all of the green light that falls on them but they reflect enough for us to detect it. Read on to find out what the role of green light is in photosynthesis. The electromagnetic spectrum: Light Visible light ranges from low blue to far-red light and is described as the wavelengths between 380 nm and 750 nm, although this varies between individuals. The region between 400 nm and 700 nm is what plants use to drive photosynthesis and is typically referred to as Photosynthetically Active Radiation (PAR). There is an inverse relationship between wavelength and quantum energy, the higher the wavelength the lower quantum energy and vice versa. Plants use wavelengths outside of PAR for the phenomenon known as photomorphogenesis, which is light regulated changes in development, morphology, biochemistry and cell structure and function. The effects of different wavelengths on plant function and form are complex and are proving to be an interesting area of study for many plant scientists. The use of specific and adjustable LEDs allows us to tease apart the roles of specific areas of the spectrum in photosynthesis. -
Ontogeny of Orientation During the Early Life History of the Pelagic Teleost Mahi-Mahi, Coryphaena Hippurus Linnaeus, 1758
Article Ontogeny of Orientation during the Early Life History of the Pelagic Teleost Mahi-Mahi, Coryphaena hippurus Linnaeus, 1758 Robin Faillettaz 1,2,* , Eve Johnson 1, Patrick Dahlmann 1, Alexandra Syunkova 1, John Stieglitz 3, Daniel Benetti 3, Martin Grosell 1 and Claire B. Paris 1,* 1 Department of Marine Biology and Ecology, University of Miami, Rosenstiel School of Marine and Atmospheric Science, 4600 Rickenbacker Causeway, Miami, FL 33149, USA; [email protected] (E.J.); [email protected] (P.D.); [email protected] (A.S.); [email protected] (M.G.) 2 Ifremer, STH, Station de Lorient, 8 rue François Toullec, F-56100 Lorient, France 3 Department of Marine Ecosystems and Society, University of Miami, Rosenstiel School of Marine and Atmospheric Science, 4600 Rickenbacker Causeway, Miami, FL 33149, USA; [email protected] (J.S.); [email protected] (D.B.) * Correspondence: [email protected] (R.F.); [email protected] (C.B.P.) Received: 6 July 2020; Accepted: 29 September 2020; Published: 8 October 2020 Abstract: Understanding the orientation behavior and capabilities in early life history (ELH) of fishes is critical for studying their dispersal but has, surprisingly, never been tested in any pelagic species. We here investigate the ontogeny of orientation and swimming abilities of the pelagic Coryphaena hippurus Linnaeus, 1758 larvae, hereafter mahi-mahi, through their ELH stages using the Drifting In Situ Chamber (DISC) in a laboratory setup. The DISC was deployed in a large (3 m3) circular aquarium in order to control the stimulus perceived by the fish and to identify behavioral response at the individual, developmental stage, and population levels. -
Planarian Behavior: a Student-Designed Laboratory Exercise
Planarian Behavior: A Student-Designed Laboratory Exercise Linda T. Collins and Brent W. Harker Department of Biological and Environmental Sciences University of Tennessee at Chattanooga Chattanooga, TN 37403 [email protected] Reprinted From: Collins, L. T. and B. W. Harker. 1999. Planarian behavior: A student-designed laboratory exercise. Pages 375-379, in Tested studies for laboratory teaching, Volume 20 (S. J. Karcher, Editor). Proceedings of the 20th Workshop/Conference of the Association for Biology Laboratory Education (ABLE), 399 pages. - Copyright policy: http://www.zoo.utoronto.ca/able/volumes/copyright.htm Although the laboratory exercises in ABLE proceedings volumes have been tested and due consideration has been given to safety, individuals performing these exercises must assume all responsibility for risk. The Association for Biology Laboratory Education (ABLE) disclaims any liability with regards to safety in connection with the use of the exercises in its proceedings volumes. © Linda T. Collins and Brent W. Harker Objectives 1. Know that different types of stimuli can affect planarian movement. 2. Distinguish between kinesis and taxis. 3. After preliminary observations, state a hypothesis to predict or explain planarian movement in response to an external stimulus. Test the hypothesis and reach a conclusion. Introduction Planarians are in the flatworm phylum, Platyhelminthes. Most planarians are free-living and are common in freshwater habitats. They are also found in marine and terrestrial environments. Planarians display bilateral symmetry, meaning the right and left halves are approximately mirror images of each other. The nervous system of planarians consists of an anterior “brain” consisting of large ganglia. Two ventral nerve cords run the length of the body from the ganglia. -
Development of Preservice Biology Teachers‟ Skills in the Causal Process Concerning Photosynthesis
Journal of Education and Training Studies Vol. 7, No. 4; April 2019 ISSN 2324-805X E-ISSN 2324-8068 Published by Redfame Publishing URL: http://jets.redfame.com Development of Preservice Biology Teachers‟ Skills in the Causal Process Concerning Photosynthesis Arzu Saka Correspondence: Arzu Saka, Trabzon University, Fatih Faculty of Education, Trabzon, 61335,Turkey. Received: February 12, 2019 Accepted: March 7, 2019 Online Published: March 11, 2019 doi:10.11114/jets.v7i4.4022 URL: https://doi.org/10.11114/jets.v7i4.4022 Abstract Photosynthesis is the most effective cycle and sustainable natural process known in nature. Students who learn the subject of photosynthesis well will also make better sense of other issues such as environmental problems, the state of the atmosphere, greenhouse gases, climate changes, carbon footprints and conservation of forests. The aim of this study is to present an example of a worksheet that investigates the skill levels possessed by preservice teachers‟ in the causal process, and also to examine their ability to write a photosynthesis equation by means of a history-based approach that also includes reading skills. The study was conducted with the action research method. The study sample consisted of a total of 71 preservice biology teachers. At the first stage, before the implementation of the worksheet, 34 teacher candidates from within the sample were asked a question with a diagram summarising the photosynthesis process. At the second stage, all the prospective teachers were asked for the skill levels they possessed in the causal process to be assessed via implementation of the worksheet. The answers given by the preservice teachers in the defining variables section in particular make up the least answered section of the worksheet.