Phototaxis and Membrane Potential in the Photosynthetic Bacterium Rhodospirillum Rubrum
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Motility in Prokaryotes O Bacterial Flagella O Gliding Motility O Chemosensing · Movement of Materials Within Bacteria and Cell Size · Magnetotactic Bactertia
Biology of the Prokaryotes The following is a series of essays on selected aspects of prokaryote biology. These essays are ongoing, and the references are periodically updated, so do not assume completion (not that such works can ever be complete). The following topics are covered: · Motility in Prokaryotes o Bacterial flagella o Gliding motility o Chemosensing · Movement of materials within bacteria and cell size · Magnetotactic bactertia Motility in Prokaryotes 1. Motility Mode 1 - Bacterial Flagella 1.1 Introduction Some bacteria are non-motile, relying entirely upon passive flotation and Brownian motion for dispersal. However, most are motile; at least during some stage of their lifecycle. Motile bacteria move with "intent", gathering in regions which are hot or cold, light or dark, or of favourable chemical/nutrient content. This is obviously a useful attribute. Many species glide across the substratum. This may involve specific organelles, such as the filament bearing goblet-shaped structures in the walls of Flexibacter (Moat, 1979). Often, however, no specific organelles appear to be involved and gliding may be attributable to the slime covering of some bacteria or the streaming of outer membrane lipids of others (e.g. Cytophaga (Moat, 1979)) or to other mechanisms currently being elucidated (see section 2). The spiral-shaped Spiroplasma corkscrews its way through the medium by means of membrane-associated fibrils resembling eukaryotic actin (Boyd, 1988). Gonogoocci exhibit twitching motility (intermittent, jerky movements) due to the presence of pili (fine filaments, 7 nm diameter, less than one micrometer long) which branch and rejoin to form an irregular surface lattice. However, more than half of motile bacteria use one or more helical, whip-like appendages, about 24 nm diameter and up to 10 mm long, called flagella (sing. -
Patterns of Bacterial Diversity in the Marine Planktonic Particulate Matter Continuum
The ISME Journal (2017) 11, 999–1010 © 2017 International Society for Microbial Ecology All rights reserved 1751-7362/17 www.nature.com/ismej ORIGINAL ARTICLE Patterns of bacterial diversity in the marine planktonic particulate matter continuum Mireia Mestre, Encarna Borrull, M Montserrat Sala and Josep M Gasol Department of Marine Biology and Oceanography, Institut de Ciències del Mar, CSIC. Barcelona, Catalunya, Spain Depending on their relationship with the pelagic particulate matter, planktonic prokaryotes have traditionally been classified into two types of communities: free-living (FL) or attached (ATT) to particles, and are generally separated using only one pore-size filter in a differential filtration. Nonetheless, particulate matter in the oceans appears in a continuum of sizes. Here we separated this continuum into six discrete size-fractions, from 0.2 to 200 μm, and described the prokaryotes associated to each of them. Each size-fraction presented different bacterial communities, with a range of 23–42% of unique (OTUs) in each size-fraction, supporting the idea that they contained distinct types of particles. An increase in richness was observed from the smallest to the largest size- fractions, suggesting that increasingly larger particles contributed new niches. Our results show that a multiple size-fractionation provides a more exhaustive description of the bacterial diversity and community structure than the use of only one filter. In addition, and based on our results, we propose an alternative to the dichotomy of FL or ATT lifestyles, in which we differentiate the taxonomic groups with preference for the smaller fractions, those that do not show preferences for small or large fractions, and those that preferentially appear in larger fractions. -
Construction and Loss of Bacterial Flagellar Filaments
biomolecules Review Construction and Loss of Bacterial Flagellar Filaments Xiang-Yu Zhuang and Chien-Jung Lo * Department of Physics and Graduate Institute of Biophysics, National Central University, Taoyuan City 32001, Taiwan; [email protected] * Correspondence: [email protected] Received: 31 July 2020; Accepted: 4 November 2020; Published: 9 November 2020 Abstract: The bacterial flagellar filament is an extracellular tubular protein structure that acts as a propeller for bacterial swimming motility. It is connected to the membrane-anchored rotary bacterial flagellar motor through a short hook. The bacterial flagellar filament consists of approximately 20,000 flagellins and can be several micrometers long. In this article, we reviewed the experimental works and models of flagellar filament construction and the recent findings of flagellar filament ejection during the cell cycle. The length-dependent decay of flagellar filament growth data supports the injection-diffusion model. The decay of flagellar growth rate is due to reduced transportation of long-distance diffusion and jamming. However, the filament is not a permeant structure. Several bacterial species actively abandon their flagella under starvation. Flagellum is disassembled when the rod is broken, resulting in an ejection of the filament with a partial rod and hook. The inner membrane component is then diffused on the membrane before further breakdown. These new findings open a new field of bacterial macro-molecule assembly, disassembly, and signal transduction. Keywords: self-assembly; injection-diffusion model; flagellar ejection 1. Introduction Since Antonie van Leeuwenhoek observed animalcules by using his single-lens microscope in the 18th century, we have entered a new era of microbiology. -
Mathematical Modelling and Analysis of Aspects of Planktonic Bacterial Motility
Mathematical modelling and analysis of aspects of planktonic bacterial motility Gabriel Aaron Rosser St Anne's College University of Oxford A thesis submitted for the degree of Doctor of Philosophy Michaelmas 2012 Contents 1 The biology of bacterial motility and taxis 8 1.1 Bacterial motility and taxis . .8 1.2 Experimental methods used to probe bacterial motility . 14 1.3 Tracking . 20 1.4 Conclusion and outlook . 21 2 Mathematical methods and models of bacterial motility and taxis 23 2.1 Modelling bacterial motility and taxis: a multiscale problem . 24 2.2 The velocity jump process . 34 2.3 Spatial moments of the general velocity jump process . 46 2.4 Circular statistics . 49 2.5 Stochastic simulation algorithm . 52 2.6 Conclusion and outlook . 54 3 Analysis methods for inferring stopping phases in tracking data 55 3.1 Analysis methods . 58 3.2 Simulation study comparison of the analysis methods . 76 3.3 Results . 80 3.4 Discussion and conclusions . 86 4 Analysis of experimental data 92 4.1 Methods . 92 i 4.2 Results . 109 4.3 Discussion and conclusions . 124 5 The effect of sampling frequency 132 5.1 Background and methods . 133 5.2 Stationary distributions . 136 5.3 Simulation study of dynamic distributions . 140 5.4 Analytic study of dynamic distributions . 149 5.5 Discussion and conclusions . 159 6 Modelling the effect of Brownian buffeting on motile bacteria 162 6.1 Background . 163 6.2 Mathematical methods . 166 6.3 A model of rotational diffusion in bacterial motility . 173 6.4 Results . 183 6.5 Discussion and conclusion . -
Force Generation by Groups of Migrating Bacteria
Force generation by groups of migrating bacteria Benedikt Sabassa,b,1, Matthias D. Kochc, Guannan Liuc,d, Howard A. Stonea, and Joshua W. Shaevitzc,d,1 aDepartment of Mechanical and Aerospace Engineering, Princeton University, NJ 08544; bInstitute of Complex Systems 2, Forschungszentrum Julich,¨ D-52425 Juelich, Germany; cLewis-Sigler Institute for Integrative Genomics, Princeton University, NJ 08544; and dJoseph Henry Laboratories of Physics, Princeton University, NJ 08544 Edited by Ulrich S. Schwarz, Heidelberg University, Heidelberg, Germany, and accepted by Editorial Board Member Herbert Levine May 23, 2017 (received for review December 30, 2016) From colony formation in bacteria to wound healing and embry- at a typical Myxococcus migration speed of 1 µm=min is on the onic development in multicellular organisms, groups of living cells order of 10−2 pN. Large traction forces will only occur if cells must often move collectively. Although considerable study has need to overcome friction with the surface or if the translation probed the biophysical mechanisms of how eukaryotic cells gener- machinery itself has internal friction, similar to the situation for ate forces during migration, little such study has been devoted to eukaryotic cells (18). Collective migration of bacteria within a bacteria, in particular with regard to the question of how bacte- contiguous group is even less understood. Could forces arise ria generate and coordinate forces during collective motion. This from a balance between cell–substrate and cell–cell interactions? question is addressed here using traction force microscopy. We Would this balance be local, or span larger distances within the study two distinct motility mechanisms of Myxococcus xanthus, group? Might one have “leader” cells at the advancing front of namely, twitching and gliding. -
Enhanced Salmonella Virulence Instigated by Bactivorous Protozoa
Iowa State University Capstones, Theses and Graduate Theses and Dissertations Dissertations 2014 Enhanced Salmonella virulence instigated by bactivorous protozoa and investigation of putative protozoan G protein-coupled receptors associated with bacterial engulfment Matt .T Brewer Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/etd Part of the Pharmacology Commons Recommended Citation Brewer, Matt .,T "Enhanced Salmonella virulence instigated by bactivorous protozoa and investigation of putative protozoan G protein-coupled receptors associated with bacterial engulfment" (2014). Graduate Theses and Dissertations. 13718. https://lib.dr.iastate.edu/etd/13718 This Dissertation is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. Enhanced Salmonella virulence instigated by bactivorous protozoa and investigation of putative protozoan G protein-coupled receptors associated with bacterial engulfment By Matt Brewer A dissertation submitted to the graduate faculty in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY Major: Biomedical Sciences (Pharmacology) Program of Study Committee: Steve A. Carlson, Major Professor Tim A. Day Michael Kimber Heather Greenlee Doug Jones Iowa State University Ames, Iowa 2014 Copyright © Matt Brewer, 2014. All rights reserved ii DEDICATION This work is dedicated to my family. To my Mom, who taught me the value of education. To my Dad, who instilled in me a deep appreciation for the diversity of life and the scientific process used to investigate it. -
Phototactic Purple Bacteria Extinction Or Miscalculation?
SCIENTIFIC CORRESPONDENCE the light source through the gradient of Phototactic purple decreasing light intensity; on the other Extinction or hand, if their movement is scotophobic, bacteria the colony should move in the opposite miscalculation? direction. R. centenum swarm colonies SIR - In 1883 T. Engelmann! discovered irradiated laterally with infrared light in SIR - Heywood et al. I have discussed that purple photosynthetic bacteria re fact moved rapidly towards the light uncertainties in modelling rates. One way verse their swimming direction when the source, as for positive phototaxis. to check a predictive model's validity is to light intensity is suddenly reduced. He Anoxygenic photosynthetic bacteria see how well it predicts past events. In this described this photosensory effect as and the oxygenic cyanobacteria and algae case, the species-area relation model does "Schreckbewegung" ('movement of share several similar physiological re fairly well in predicting the number of fright'), but it is more properly designated quirements, so it is not surprising that bird and mammal extinctions during the as a scotophobic response, past 500 years in the United States and that is, a fear of darkness. a Canada .. Scotophobic behaviour is Time (min) Infrared Here I consider species extirpated fol typical of motile purple bac lowing habitat destruction initiated by 2 teria, is independent of the o Europeans in North America , combined direction of illumination, with currently endangered or threatened 3 and does not occur if the 30 species , to check if species loss is con light intensity is reduced ..'Q" gruent with habitat loss. Although exact only gradually. By contrast, 60 figures are difficult to come by, I take as oxygenic cyanobacteria and 20% the amount of land removed from algae exhibit phototactic re- 120 native North American mammal and bird 4 sponses, that is, oriented habitats . -
Schmitt-2011-Thalassas.Pdf
Thalassas, 27 (2): 225-238 An International Journal of Marine Sciences BEHAVIORAL ADAPTATIONS IN RELATION TO LONG-TERM RETENTION OF ENDOSYMBIOTIC CHLOROPLASTS IN THE SEA SLUG Elysia timida (OPISTHOBRANCHIA, SACOGLOSSA) VALÉRIE SCHMITT (1, 2) & HEIKE WÄGELE (1) Key words: Sacoglossa, endosymbiosis, chloroplasts, retention, phototaxis, photobehavior. ABSTRACT in basins with running seawater and natural light through a glass window. Behavioral observations A comparative study was performed to analyze and PAM-measurements were performed in 4 time differences in evolutionary adaptations in two sea intervals in the course of an observation day in slug species, Elysia timida with long-term retention of daylight and dark-adapted conditions. Phototactic endosymbiotic chloroplasts and Thuridilla hopei with behavior was found to be present in both compared short-term retention of endosymbiotic chloroplasts. species, although the phototactic reaction was Both sacoglossan species stem from the same habitat more pronounced in E. timida. Phototaxis was also and show similar body sizes and structures with observed in juvenile E. timida before sequestration parapodial lobes whose position can be actively of first Acetabularia-chloroplasts, which indicates varied by the slugs. Ethological analyses were carried no direct current influence of the endosymbiotic out concerning the positioning of parapodia and chloroplasts. Other parameters, however, like the other photobehavioral parameters like phototaxis. In positioning of the parapodia, were observed to parallel, photosynthetic activity was measured with be significantly different between the long-term a Pulse Amplitude Modulated Fluorometer (PAM). and short-term storing species. While an adapted In total, 252 E. timida individuals and 63 T. hopei changing of the parapodia’s position in reaction to individuals were included in the analysis. -
Ontogeny of Orientation During the Early Life History of the Pelagic Teleost Mahi-Mahi, Coryphaena Hippurus Linnaeus, 1758
Article Ontogeny of Orientation during the Early Life History of the Pelagic Teleost Mahi-Mahi, Coryphaena hippurus Linnaeus, 1758 Robin Faillettaz 1,2,* , Eve Johnson 1, Patrick Dahlmann 1, Alexandra Syunkova 1, John Stieglitz 3, Daniel Benetti 3, Martin Grosell 1 and Claire B. Paris 1,* 1 Department of Marine Biology and Ecology, University of Miami, Rosenstiel School of Marine and Atmospheric Science, 4600 Rickenbacker Causeway, Miami, FL 33149, USA; [email protected] (E.J.); [email protected] (P.D.); [email protected] (A.S.); [email protected] (M.G.) 2 Ifremer, STH, Station de Lorient, 8 rue François Toullec, F-56100 Lorient, France 3 Department of Marine Ecosystems and Society, University of Miami, Rosenstiel School of Marine and Atmospheric Science, 4600 Rickenbacker Causeway, Miami, FL 33149, USA; [email protected] (J.S.); [email protected] (D.B.) * Correspondence: [email protected] (R.F.); [email protected] (C.B.P.) Received: 6 July 2020; Accepted: 29 September 2020; Published: 8 October 2020 Abstract: Understanding the orientation behavior and capabilities in early life history (ELH) of fishes is critical for studying their dispersal but has, surprisingly, never been tested in any pelagic species. We here investigate the ontogeny of orientation and swimming abilities of the pelagic Coryphaena hippurus Linnaeus, 1758 larvae, hereafter mahi-mahi, through their ELH stages using the Drifting In Situ Chamber (DISC) in a laboratory setup. The DISC was deployed in a large (3 m3) circular aquarium in order to control the stimulus perceived by the fish and to identify behavioral response at the individual, developmental stage, and population levels. -
Planarian Behavior: a Student-Designed Laboratory Exercise
Planarian Behavior: A Student-Designed Laboratory Exercise Linda T. Collins and Brent W. Harker Department of Biological and Environmental Sciences University of Tennessee at Chattanooga Chattanooga, TN 37403 [email protected] Reprinted From: Collins, L. T. and B. W. Harker. 1999. Planarian behavior: A student-designed laboratory exercise. Pages 375-379, in Tested studies for laboratory teaching, Volume 20 (S. J. Karcher, Editor). Proceedings of the 20th Workshop/Conference of the Association for Biology Laboratory Education (ABLE), 399 pages. - Copyright policy: http://www.zoo.utoronto.ca/able/volumes/copyright.htm Although the laboratory exercises in ABLE proceedings volumes have been tested and due consideration has been given to safety, individuals performing these exercises must assume all responsibility for risk. The Association for Biology Laboratory Education (ABLE) disclaims any liability with regards to safety in connection with the use of the exercises in its proceedings volumes. © Linda T. Collins and Brent W. Harker Objectives 1. Know that different types of stimuli can affect planarian movement. 2. Distinguish between kinesis and taxis. 3. After preliminary observations, state a hypothesis to predict or explain planarian movement in response to an external stimulus. Test the hypothesis and reach a conclusion. Introduction Planarians are in the flatworm phylum, Platyhelminthes. Most planarians are free-living and are common in freshwater habitats. They are also found in marine and terrestrial environments. Planarians display bilateral symmetry, meaning the right and left halves are approximately mirror images of each other. The nervous system of planarians consists of an anterior “brain” consisting of large ganglia. Two ventral nerve cords run the length of the body from the ganglia. -
Chemotactic Drift Speed for Bacterial Motility Pattern with Two Alternating Turning Events
RESEARCH ARTICLE Chemotactic drift speed for bacterial motility pattern with two alternating turning events Evgeniya V. Pankratova1*, Alena I. Kalyakulina1, Mikhail I. Krivonosov1, Sergei V. Denisov1,2, Katja M. Taute3, Vasily Yu. Zaburdaev4,5 1 Institute of Information Technologies, Mathematics and Mechanics, Lobachevsky State University, Nizhniy Novgorod, Russia, 2 Department of Theoretical Physics, University of Augsburg, Augsburg, Germany, 3 Rowland Institute at Harvard, Harvard University, Cambridge, United States of America, 4 Max Planck Institute for the Physics of Complex Systems, Dresden, Germany, 5 Institute of Supercomputing Technologies, Lobachevsky State University, Nizhniy Novgorod, Russia a1111111111 a1111111111 * [email protected] a1111111111 a1111111111 a1111111111 Abstract Bacterial chemotaxis is one of the most extensively studied adaptive responses in cells. Many bacteria are able to bias their apparently random motion to produce a drift in the direc- OPEN ACCESS tion of the increasing chemoattractant concentration. It has been recognized that the partic- ular motility pattern employed by moving bacteria has a direct impact on the efficiency of Citation: Pankratova EV, Kalyakulina AI, Krivonosov MI, Denisov SV, Taute KM, Zaburdaev chemotaxis. The linear theory of chemotaxis pioneered by de Gennes allows for calculation VY. (2018) Chemotactic drift speed for bacterial of the drift velocity in small gradients for bacteria with basic motility patterns. However, motility pattern with two alternating turning events. recent experimental data on several bacterial species highlighted the motility pattern where PLoS ONE 13(1): e0190434. https://doi.org/ the almost straight runs of cells are interspersed with turning events leading to the reorienta- 10.1371/journal.pone.0190434 tion of the cell swimming directions with two distinct angles following in strictly alternating Editor: Friedrich Frischknecht, University of order. -
Bacterial Motility
Practical microbiology AL-Muthanna university Lecturer:Muna Tawfeeq veterinary medicine college Bacterial motility Many bacteria show no motion and are termed non-motile. However, in an aqueous environment, these same bacteria appear to be moving randomly. This erratic movement is due to Brownian movement. Brownian movement results from the random motion of the water molecules shaking the bacteria and causing them to move. True motility (self-propulsion) has been recognized in other bacteria and involves several different mechanisms. ⇛ Bacteria that possess flagella exhibit flagellar motion. ⇛ Helical-shaped spirochetes have axial fibrils (modified flagella that wrap around the bacterium) that form axial filaments. These spirochetes move in a corkscrew- and bending-type motion. ⇛ Other bacteria simply slide over moist surfaces in a form of gliding motion. When attempting to identify an unknown bacterium it is usually necessary to determine whether the microorganism is motile, there are four detecting method: 1. The Wet Mount Slide The simplest way to determine motility is to suspended bacterial cells in a suitable fluid on a clean slide and covers it with a coverslip. Always examine a wet mount immediately, once it has been prepared, because motility decreases with time after preparation. One problem for beginners is the difficulty of being able to see the organisms on the slide. Since bacteria are generally colorless and very transparent, the beginner has to learn how to bring them into focus. Advantages: This method is the simplest and quickest way to determine motility. It is also useful for determining cellular shape and arrangement which is sometimes destroyed during the staining process.