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Frontiers in Zoology Biomed Central
Frontiers in Zoology BioMed Central Research Open Access Functional chloroplasts in metazoan cells - a unique evolutionary strategy in animal life Katharina Händeler*1, Yvonne P Grzymbowski1, Patrick J Krug2 and Heike Wägele1 Address: 1Zoologisches Forschungsmuseum Alexander Koenig, Adenauerallee 160, 53113 Bonn, Germany and 2Department of Biological Sciences, California State University, Los Angeles, California, 90032-8201, USA Email: Katharina Händeler* - [email protected]; Yvonne P Grzymbowski - [email protected]; Patrick J Krug - [email protected]; Heike Wägele - [email protected] * Corresponding author Published: 1 December 2009 Received: 26 June 2009 Accepted: 1 December 2009 Frontiers in Zoology 2009, 6:28 doi:10.1186/1742-9994-6-28 This article is available from: http://www.frontiersinzoology.com/content/6/1/28 © 2009 Händeler et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: Among metazoans, retention of functional diet-derived chloroplasts (kleptoplasty) is known only from the sea slug taxon Sacoglossa (Gastropoda: Opisthobranchia). Intracellular maintenance of plastids in the slug's digestive epithelium has long attracted interest given its implications for understanding the evolution of endosymbiosis. However, photosynthetic ability varies widely among sacoglossans; some species have no plastid retention while others survive for months solely on photosynthesis. We present a molecular phylogenetic hypothesis for the Sacoglossa and a survey of kleptoplasty from representatives of all major clades. We sought to quantify variation in photosynthetic ability among lineages, identify phylogenetic origins of plastid retention, and assess whether kleptoplasty was a key character in the radiation of the Sacoglossa. -
Phototactic Purple Bacteria Extinction Or Miscalculation?
SCIENTIFIC CORRESPONDENCE the light source through the gradient of Phototactic purple decreasing light intensity; on the other Extinction or hand, if their movement is scotophobic, bacteria the colony should move in the opposite miscalculation? direction. R. centenum swarm colonies SIR - In 1883 T. Engelmann! discovered irradiated laterally with infrared light in SIR - Heywood et al. I have discussed that purple photosynthetic bacteria re fact moved rapidly towards the light uncertainties in modelling rates. One way verse their swimming direction when the source, as for positive phototaxis. to check a predictive model's validity is to light intensity is suddenly reduced. He Anoxygenic photosynthetic bacteria see how well it predicts past events. In this described this photosensory effect as and the oxygenic cyanobacteria and algae case, the species-area relation model does "Schreckbewegung" ('movement of share several similar physiological re fairly well in predicting the number of fright'), but it is more properly designated quirements, so it is not surprising that bird and mammal extinctions during the as a scotophobic response, past 500 years in the United States and that is, a fear of darkness. a Canada .. Scotophobic behaviour is Time (min) Infrared Here I consider species extirpated fol typical of motile purple bac lowing habitat destruction initiated by 2 teria, is independent of the o Europeans in North America , combined direction of illumination, with currently endangered or threatened 3 and does not occur if the 30 species , to check if species loss is con light intensity is reduced ..'Q" gruent with habitat loss. Although exact only gradually. By contrast, 60 figures are difficult to come by, I take as oxygenic cyanobacteria and 20% the amount of land removed from algae exhibit phototactic re- 120 native North American mammal and bird 4 sponses, that is, oriented habitats . -
Abstract Volume
ABSTRACT VOLUME August 11-16, 2019 1 2 Table of Contents Pages Acknowledgements……………………………………………………………………………………………...1 Abstracts Symposia and Contributed talks……………………….……………………………………………3-225 Poster Presentations…………………………………………………………………………………226-291 3 Venom Evolution of West African Cone Snails (Gastropoda: Conidae) Samuel Abalde*1, Manuel J. Tenorio2, Carlos M. L. Afonso3, and Rafael Zardoya1 1Museo Nacional de Ciencias Naturales (MNCN-CSIC), Departamento de Biodiversidad y Biologia Evolutiva 2Universidad de Cadiz, Departamento CMIM y Química Inorgánica – Instituto de Biomoléculas (INBIO) 3Universidade do Algarve, Centre of Marine Sciences (CCMAR) Cone snails form one of the most diverse families of marine animals, including more than 900 species classified into almost ninety different (sub)genera. Conids are well known for being active predators on worms, fishes, and even other snails. Cones are venomous gastropods, meaning that they use a sophisticated cocktail of hundreds of toxins, named conotoxins, to subdue their prey. Although this venom has been studied for decades, most of the effort has been focused on Indo-Pacific species. Thus far, Atlantic species have received little attention despite recent radiations have led to a hotspot of diversity in West Africa, with high levels of endemic species. In fact, the Atlantic Chelyconus ermineus is thought to represent an adaptation to piscivory independent from the Indo-Pacific species and is, therefore, key to understanding the basis of this diet specialization. We studied the transcriptomes of the venom gland of three individuals of C. ermineus. The venom repertoire of this species included more than 300 conotoxin precursors, which could be ascribed to 33 known and 22 new (unassigned) protein superfamilies, respectively. Most abundant superfamilies were T, W, O1, M, O2, and Z, accounting for 57% of all detected diversity. -
Phototaxis and Membrane Potential in the Photosynthetic Bacterium Rhodospirillum Rubrum
JOURNAL OF BACTEIUOLOGY, July 1977, p. 34-41 Vol. 131, No. 1 Copyright © 1977 American Society for Microbiology Printed in U.S.A. Phototaxis and Membrane Potential in the Photosynthetic Bacterium Rhodospirillum rubrum SHIGEAKI HARAYAMA* AND TETSUO IINO Laboratory of Genetics, Faculty of Science, University of Tokyo, Hongo, Tokyo 113, Japan Received for publication 23 February 1977 Cells of the photosynthetic bacterium Rhodospirillum rubrum cultivated anaerobically in light show phototaxis. The behavior of individual cells in response to the phenomenon is reversal(s) of the swimming direction when the intensity of the light available to them abruptly decreases. The tactic response was inhibited by antimycin, an inhibitor of the photosynthetic electron transfer system. The inhibitory effect of antimycin was overcome by phenazine metho- sulfate. Motility of the cells was not impaired by antimycin under aerobic conditions. Valinomycin plus potassium also inhibited their phototactic re- sponse; however, valinomycin or potassium alone had no effect. A change in membrane potential of the cells was measured as an absorbance change of carotenoid. Changes in the membrane potential caused by "on-off' light were prevented by antimycin and by valinomycin plus potassium, but not by antimy- cin plus phenazine methosulfate nor valinomycin or potassium alone. The results indicated that the phototactic response of R. rubrum is mediated by a sudden change in electron flow in the photosynthetic electron transfer system, and that the membrane potential plays an important role in manifestation of the re- sponse. Bacterial phototaxis has been observed in systems. The chemotactic behavior of individ- photosynthetic bacteria (6, 22) and in Halobac- ual cells ofE. -
Ontogeny of Orientation During the Early Life History of the Pelagic Teleost Mahi-Mahi, Coryphaena Hippurus Linnaeus, 1758
Article Ontogeny of Orientation during the Early Life History of the Pelagic Teleost Mahi-Mahi, Coryphaena hippurus Linnaeus, 1758 Robin Faillettaz 1,2,* , Eve Johnson 1, Patrick Dahlmann 1, Alexandra Syunkova 1, John Stieglitz 3, Daniel Benetti 3, Martin Grosell 1 and Claire B. Paris 1,* 1 Department of Marine Biology and Ecology, University of Miami, Rosenstiel School of Marine and Atmospheric Science, 4600 Rickenbacker Causeway, Miami, FL 33149, USA; [email protected] (E.J.); [email protected] (P.D.); [email protected] (A.S.); [email protected] (M.G.) 2 Ifremer, STH, Station de Lorient, 8 rue François Toullec, F-56100 Lorient, France 3 Department of Marine Ecosystems and Society, University of Miami, Rosenstiel School of Marine and Atmospheric Science, 4600 Rickenbacker Causeway, Miami, FL 33149, USA; [email protected] (J.S.); [email protected] (D.B.) * Correspondence: [email protected] (R.F.); [email protected] (C.B.P.) Received: 6 July 2020; Accepted: 29 September 2020; Published: 8 October 2020 Abstract: Understanding the orientation behavior and capabilities in early life history (ELH) of fishes is critical for studying their dispersal but has, surprisingly, never been tested in any pelagic species. We here investigate the ontogeny of orientation and swimming abilities of the pelagic Coryphaena hippurus Linnaeus, 1758 larvae, hereafter mahi-mahi, through their ELH stages using the Drifting In Situ Chamber (DISC) in a laboratory setup. The DISC was deployed in a large (3 m3) circular aquarium in order to control the stimulus perceived by the fish and to identify behavioral response at the individual, developmental stage, and population levels. -
Planarian Behavior: a Student-Designed Laboratory Exercise
Planarian Behavior: A Student-Designed Laboratory Exercise Linda T. Collins and Brent W. Harker Department of Biological and Environmental Sciences University of Tennessee at Chattanooga Chattanooga, TN 37403 [email protected] Reprinted From: Collins, L. T. and B. W. Harker. 1999. Planarian behavior: A student-designed laboratory exercise. Pages 375-379, in Tested studies for laboratory teaching, Volume 20 (S. J. Karcher, Editor). Proceedings of the 20th Workshop/Conference of the Association for Biology Laboratory Education (ABLE), 399 pages. - Copyright policy: http://www.zoo.utoronto.ca/able/volumes/copyright.htm Although the laboratory exercises in ABLE proceedings volumes have been tested and due consideration has been given to safety, individuals performing these exercises must assume all responsibility for risk. The Association for Biology Laboratory Education (ABLE) disclaims any liability with regards to safety in connection with the use of the exercises in its proceedings volumes. © Linda T. Collins and Brent W. Harker Objectives 1. Know that different types of stimuli can affect planarian movement. 2. Distinguish between kinesis and taxis. 3. After preliminary observations, state a hypothesis to predict or explain planarian movement in response to an external stimulus. Test the hypothesis and reach a conclusion. Introduction Planarians are in the flatworm phylum, Platyhelminthes. Most planarians are free-living and are common in freshwater habitats. They are also found in marine and terrestrial environments. Planarians display bilateral symmetry, meaning the right and left halves are approximately mirror images of each other. The nervous system of planarians consists of an anterior “brain” consisting of large ganglia. Two ventral nerve cords run the length of the body from the ganglia. -
Describing Species
DESCRIBING SPECIES Practical Taxonomic Procedure for Biologists Judith E. Winston COLUMBIA UNIVERSITY PRESS NEW YORK Columbia University Press Publishers Since 1893 New York Chichester, West Sussex Copyright © 1999 Columbia University Press All rights reserved Library of Congress Cataloging-in-Publication Data © Winston, Judith E. Describing species : practical taxonomic procedure for biologists / Judith E. Winston, p. cm. Includes bibliographical references and index. ISBN 0-231-06824-7 (alk. paper)—0-231-06825-5 (pbk.: alk. paper) 1. Biology—Classification. 2. Species. I. Title. QH83.W57 1999 570'.1'2—dc21 99-14019 Casebound editions of Columbia University Press books are printed on permanent and durable acid-free paper. Printed in the United States of America c 10 98765432 p 10 98765432 The Far Side by Gary Larson "I'm one of those species they describe as 'awkward on land." Gary Larson cartoon celebrates species description, an important and still unfinished aspect of taxonomy. THE FAR SIDE © 1988 FARWORKS, INC. Used by permission. All rights reserved. Universal Press Syndicate DESCRIBING SPECIES For my daughter, Eliza, who has grown up (andput up) with this book Contents List of Illustrations xiii List of Tables xvii Preface xix Part One: Introduction 1 CHAPTER 1. INTRODUCTION 3 Describing the Living World 3 Why Is Species Description Necessary? 4 How New Species Are Described 8 Scope and Organization of This Book 12 The Pleasures of Systematics 14 Sources CHAPTER 2. BIOLOGICAL NOMENCLATURE 19 Humans as Taxonomists 19 Biological Nomenclature 21 Folk Taxonomy 23 Binomial Nomenclature 25 Development of Codes of Nomenclature 26 The Current Codes of Nomenclature 50 Future of the Codes 36 Sources 39 Part Two: Recognizing Species 41 CHAPTER 3. -
Characterization of Chlamydomonas Reinhardtii Mutants That Exhibit Strong Positive Phototaxis
plants Article Characterization of Chlamydomonas reinhardtii Mutants That Exhibit Strong Positive Phototaxis Jun Morishita 1,2, Ryutaro Tokutsu 3,4,†, Jun Minagawa 3,4 , Toru Hisabori 1,2 and Ken-ichi Wakabayashi 1,2,* 1 Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan; [email protected] (J.M.); [email protected] (T.H.) 2 School of Life Science and Technology, Tokyo Institute of Technology, Yokohama 226-8503, Japan 3 Division of Environmental Photobiology, National Institute for Basic Biology, Okazaki 444-8585, Japan; [email protected] (R.T.); [email protected] (J.M.) 4 Department of Basic Biology, Faculty of Life Science, The Graduate University for Advanced Studies, SOKENDAI, Okazaki 444-8585, Japan * Correspondence: [email protected] † Current address: Department of Botany, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan. Abstract: The most motile phototrophic organisms exhibit photo-induced behavioral responses (photobehavior) to inhabit better light conditions for photosynthesis. The unicellular green alga Chlamydomonas reinhardtii is an excellent model organism to study photobehavior. Several years ago, we found that C. reinhardtii cells reverse their phototactic signs (i.e., positive and negative phototaxis) depending on the amount of reactive oxygen species (ROS) accumulated in the cell. However, its molecular mechanism is unclear. In this study, we isolated seven mutants showing positive Citation: Morishita, J.; Tokutsu, R.; phototaxis, even after the induction of negative phototaxis (ap1~7: always positive) to understand the Minagawa, J.; Hisabori, T.; ROS-dependent regulatory mechanism for the phototactic sign. -
Preliminary Study on Molecular Phylogeny of Sacoglossa and a Compilation of Their Food Organisms*
Bonner zoologische Beiträge Band 55 (2006) Heft 3/4 Seiten 231–254 Bonn, November 2007 Preliminary study on molecular phylogeny of Sacoglossa and a compilation of their food organisms* Katharina HÄNDELER1) & Heike WÄGELE1),2) 1)Institut für Evolutionsbiologie und Ökologie, Rheinische Friedrich-Wilhelms-Universität, Bonn, Germany 2)Zoologisches Forschungsmuseum Alexander Koenig, Bonn, Germany *Paper presented to the 2nd International Workshop on Opisthobranchia, ZFMK, Bonn, Germany, September 20th to 22nd, 2006 Abstract. The first molecular analysis of the Sacoglossa based on the 16Sr DNA gene (partial), with 39 species and 59 specimens analysed, is presented. A saturation of substitution is observed, as well as conflict in the data concerning cer- tain taxa. Therefore the phylogenetic relationship presented here has to be considered as preliminary. Many results are congruent with the analysis of JENSEN (1996) based on morphological characters. Plakobranchacea are monophyletic. Elysiella pusilla is nested within the genus Elysia and therefore synonymy of Elysiella with Elysia confirmed. The po- sition of Plakobranchus remains unclear, but a closer affinity to Elysia than to Thuridilla seems most likely. Major dif- ferences lie in the paraphyly of the Oxynoacea, but only few members of this taxon have been included. A compilation of available data on food algae is presented and the data are discussed under the light of the phylogenetic relationship presented here. Keywords. Opisthobranchia, molecular systematics, SplitsTree, Chlorophyta, evolution, 16S rDNA. 1. INTRODUCTION Sacoglossa is a small group of Opisthobranchia with about Sacoglossa is feeding nearly exclusively on siphonalean 250 to 300 described species (JE N S E N 1997a). Animals are or siphonocladalean Chlorophyta. -
A Polyvalent and Universal Tool for Genomic Studies In
A polyvalent and universal tool for genomic studies in gastropod molluscs (Heterobranchia: Tectipleura) Juan Moles1 and Gonzalo Giribet1 1Harvard University Faculty of Arts and Sciences April 28, 2020 Abstract Molluscs are the second most diverse animal phylum and heterobranch gastropods present ~44,000 species. These comprise fascinating creatures with a huge morphological and ecological disparity. Such great diversity comes with even larger phyloge- netic uncertainty and many taxa have been largely neglected in molecular assessments. Genomic tools have provided resolution to deep cladogenic events but generating large numbers of transcriptomes/genomes is expensive and usually requires fresh material. Here we leverage a target enrichment approach to design and synthesize a probe set based on available genomes and transcriptomes across Heterobranchia. Our probe set contains 57,606 70mer baits and targets a total of 2,259 ultra-conserved elements (UCEs). Post-sequencing capture efficiency was tested against 31 marine heterobranchs from major groups, includ- ing Acochlidia, Acteonoidea, Aplysiida, Cephalaspidea, Pleurobranchida, Pteropoda, Runcinida, Sacoglossa, and Umbraculida. The combined Trinity and Velvet assemblies recovered up to 2,211 UCEs in Tectipleura and up to 1,978 in Nudipleura, the most distantly related taxon to our core study group. Total alignment length was 525,599 bp and contained 52% informative sites and 21% missing data. Maximum-likelihood and Bayesian inference approaches recovered the monophyly of all orders tested as well as the larger clades Nudipleura, Panpulmonata, and Euopisthobranchia. The successful enrichment of diversely preserved material and DNA concentrations demonstrate the polyvalent nature of UCEs, and the universality of the probe set designed. We believe this probe set will enable multiple, interesting lines of research, that will benefit from an inexpensive and largely informative tool that will, additionally, benefit from the access to museum collections to gather genomic data. -
Marine Biodiversity in India
MARINEMARINE BIODIVERSITYBIODIVERSITY ININ INDIAINDIA MARINE BIODIVERSITY IN INDIA Venkataraman K, Raghunathan C, Raghuraman R, Sreeraj CR Zoological Survey of India CITATION Venkataraman K, Raghunathan C, Raghuraman R, Sreeraj CR; 2012. Marine Biodiversity : 1-164 (Published by the Director, Zool. Surv. India, Kolkata) Published : May, 2012 ISBN 978-81-8171-307-0 © Govt. of India, 2012 Printing of Publication Supported by NBA Published at the Publication Division by the Director, Zoological Survey of India, M-Block, New Alipore, Kolkata-700 053 Printed at Calcutta Repro Graphics, Kolkata-700 006. ht³[eg siJ rJrJ";t Œtr"fUhK NATIONAL BIODIVERSITY AUTHORITY Cth;Govt. ofmhfUth India ztp. ctÖtf]UíK rvmwvtxe yÆgG Dr. Balakrishna Pisupati Chairman FOREWORD The marine ecosystem is home to the richest and most diverse faunal and floral communities. India has a coastline of 8,118 km, with an exclusive economic zone (EEZ) of 2.02 million sq km and a continental shelf area of 468,000 sq km, spread across 10 coastal States and seven Union Territories, including the islands of Andaman and Nicobar and Lakshadweep. Indian coastal waters are extremely diverse attributing to the geomorphologic and climatic variations along the coast. The coastal and marine habitat includes near shore, gulf waters, creeks, tidal flats, mud flats, coastal dunes, mangroves, marshes, wetlands, seaweed and seagrass beds, deltaic plains, estuaries, lagoons and coral reefs. There are four major coral reef areas in India-along the coasts of the Andaman and Nicobar group of islands, the Lakshadweep group of islands, the Gulf of Mannar and the Gulf of Kachchh . The Andaman and Nicobar group is the richest in terms of diversity. -
How Chlamydomonas Keeps Track of the Light Once It Has Reached the Right Phototactic Orientation
1562 Biophysical Journal Volume 73 September 1997 1562-1562 How Chiamydomonas Keeps Track of the Light Once It Has Reached the Right Phototactic Orientation Klaus Schaller, Ruth David, and Rainer Uhl Abteilung Physikalische Biologie der Ludwig Maximilians Universitat, D-80638 Munchen, Germany ABSTRACT By using a real-time assay that allows measurement of the phototactic orientation of the unicellular alga Chlamydomonas with millisecond time resolution, it can be shown that single photons not only induce transient direction changes but that fluence rates as low as 1 photon cell-1 s-1 can already lead to a persistent orientation. Orientation is a binary variable, i.e., in a partially oriented population some organisms are fully oriented while the rest are still at random. Action spectra reveal that the response to a pulsed stimulus follows the Dartnall-nomogram for a rhodopsin while the response to a persistent stimulus falls off more rapidly toward the red end of the spectrum. Thus light of 540 nm, for which ch/amy-rhodopsin is equally sensitive as for 440-nm light, induces no measurable persistent orientation while 440-nm light does. A model is presented which explains not only this behavior, but also how Chlamydomonas can track the light direction and switches between a positive and negative phototaxis. According to the model the ability to detect the direction of light, to make the right turn and to stay oriented, is a direct consequence of the helical path of the organism, the orientation of its eyespot relative to the helix-axis, and the special shielding properties of eyespot and cell body.