Chlorophyll Biosynthesis
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1 Introduction
Introduction 1 1 Introduction Tetrapyrroles belong to a group of molecules with a common structure. They are synthesized in a branched pathway, in which various end products are formed to different amounts. The most abundant cyclic tetrapyrroles are chlorophyll (Chl) and heme, which are characterized by a chelated magnesium and ferrous ion, respectively. Chlorophyll is involved in light absorption and energy transduction during photosynthesis. Heme is a cofactor of hemoglobin, cytochromes, P450 mixed-function oxygenases, and catalases. Other members of the class of tetrapyrroles include siroheme (the prosthetic group of nitrite and sulphite reductases) and phytochromobilin, the chromophore of phytochrome, which is involved in light perception. Tetrapyrrole biosynthesis has been the subject of numerous studies over several decades. But genetic and biochemical characterization of tetrapyrrole biosynthesis has progressed by using approaches to genetically dissect the tetrapyrrole biosynthetic pathway. Pigment-deficient mutants and antisense technology have proved to be useful for examining the mechanisms of metabolic control or for analyzing biochemically the enzymatic steps which are affected by the mutation or by the antisense RNA expression. Tetrapyrrole intermediates are highly photoreactive. They can easily be excited and transfer the energy or electrons to O2. Then reactive oxygen species (ROS) are produced upon exposure to light and oxygen. Under normal growth conditions the risk of photooxidative damage from intermediates in tetrapyrrole biosynthesis is low. Excessive accumulation of such intermediates is the result of deregulation of tetrapyrrole biosynthesis. Toxic effects of porphyrins are evident in human patients with deficiencies of one of the enzymes of heme biosynthesis. These patients are suffering from metabolic diseases, which are called porphyrias (Moore, 1993). -
Light-Induced Psba Translation in Plants Is Triggered by Photosystem II Damage Via an Assembly-Linked Autoregulatory Circuit
Light-induced psbA translation in plants is triggered by photosystem II damage via an assembly-linked autoregulatory circuit Prakitchai Chotewutmontria and Alice Barkana,1 aInstitute of Molecular Biology, University of Oregon, Eugene, OR 97403 Edited by Krishna K. Niyogi, University of California, Berkeley, CA, and approved July 22, 2020 (received for review April 26, 2020) The D1 reaction center protein of photosystem II (PSII) is subject to mRNA to provide D1 for PSII repair remain obscure (13, 14). light-induced damage. Degradation of damaged D1 and its re- The consensus view in recent years has been that psbA transla- placement by nascent D1 are at the heart of a PSII repair cycle, tion for PSII repair is regulated at the elongation step (7, 15–17), without which photosynthesis is inhibited. In mature plant chloro- a view that arises primarily from experiments with the green alga plasts, light stimulates the recruitment of ribosomes specifically to Chlamydomonas reinhardtii (Chlamydomonas) (18). However, we psbA mRNA to provide nascent D1 for PSII repair and also triggers showed recently that regulated translation initiation makes a a global increase in translation elongation rate. The light-induced large contribution in plants (19). These experiments used ribo- signals that initiate these responses are unclear. We present action some profiling (ribo-seq) to monitor ribosome occupancy on spectrum and genetic data indicating that the light-induced re- cruitment of ribosomes to psbA mRNA is triggered by D1 photo- chloroplast open reading frames (ORFs) in maize and Arabi- damage, whereas the global stimulation of translation elongation dopsis upon shifting seedlings harboring mature chloroplasts is triggered by photosynthetic electron transport. -
Evolution of Photochemical Reaction Centres
bioRxiv preprint doi: https://doi.org/10.1101/502450; this version posted December 20, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Evolution of photochemical reaction 2 centres: more twists? 3 4 Tanai Cardona, A. William Rutherford 5 Department of Life Sciences, Imperial College London, London, UK 6 Correspondence to: [email protected] 7 8 Abstract 9 The earliest event recorded in the molecular evolution of photosynthesis is the structural and 10 functional specialisation of Type I (ferredoxin-reducing) and Type II (quinone-reducing) reaction 11 centres. Here we point out that the homodimeric Type I reaction centre of Heliobacteria has a Ca2+- 12 binding site with a number of striking parallels to the Mn4CaO5 cluster of cyanobacterial 13 Photosystem II. This structural parallels indicate that water oxidation chemistry originated at the 14 divergence of Type I and Type II reaction centres. We suggests that this divergence was triggered by 15 a structural rearrangement of a core transmembrane helix resulting in a shift of the redox potential 16 of the electron donor side and electron acceptor side at the same time and in the same redox direction. 17 18 Keywords 19 Photosynthesis, Photosystem, Water oxidation, Oxygenic, Anoxygenic, Reaction centre 20 21 Evolution of Photosystem II 22 There is no consensus on when and how oxygenic photosynthesis originated. Both the timing and the 23 evolutionary mechanism are disputed. -
TION of BUCKWHEAT. It Has Been Known for a Long Time That Certain
PHOTOSENSITIZATION OF ANIMALS AFTER THE INGES- TION OF BUCKWHEAT. BY CHARLES SHEARD, PH.D., HAROLD D. CAYLOR, M.D., AND CARL SCHLOTTHAUER, D.V.M. (From tke Section on Pkysics and Biophysical Research, tke Section on Surgical Pathology, and the Division of Experimental Palhdogy and Surgery, Mayo Clinic and The Mayo Foundation, Rochester, Minnesota.) (Received for publication,~'March 1, 1928.) It has been known for a long time that certain animals, following the ingestion of various substances, are rendered sensitive to certain types of radiant energy. The present study covers biologic and physical observations on the degree of sensitization, the character of the sensitizing light and the nature of the photodynamic substance of buckwheat. White rabbits, mice, rats, goats, swine, dogs and varicolored guinea pigs were studied. Sunlight, carbon arc lamp (Efka or Hoffman) with Conradty-Norris vacuum carbon electrodes and quartz mercury vapor arcs (Victor X-Ray Corporation), both with and without various filters, were employed for irradiation. All of these sources contain infra-red, visible and ultra-violet radiations. I~SLr~ OF LITERATURE. Considerable literature, especially European, has appeared on the subject of diseases in animals and man brought about by optical sensitization. Somewhat detailed accounts of the contributions relative to diseases due to exogenous sensi- tization are to be found in the brochures by Hausmann and by Mayer. Years ago European stockmen found that in certain animals which had ingested buckwheat (plant or seed), erythema, itching, edema and convulsions developed and, in many cases, paralysis and death, on exposure to out-of-door sunshine. However, untoward symptoms did not arise if the animals were kept indoors or in partial darkness and they recovered from the sensitization induced by eating certain plants if they were removed from the light early in the onset of the symp- toms. -
Influence of Alkaline Treatment on Structural Modifications Of
foods Article Influence of Alkaline Treatment on Structural Modifications of Chlorophyll Pigments in NaOH—Treated Table Olives Preserved without Fermentation Marta Berlanga-Del Pozo, Lourdes Gallardo-Guerrero and Beatriz Gandul-Rojas * Chemistry and Biochemistry of Pigments, Food Phytochemistry, Instituto de la Grasa (CSIC), Campus Universitario Pablo de Olavide, Edificio 46, Ctra. Utrera km 1, 41013 Sevilla, Spain; [email protected] (M.B.-D.P.); [email protected] (L.G.-G.) * Correspondence: [email protected] Received: 28 April 2020; Accepted: 18 May 2020; Published: 1 June 2020 Abstract: Alkaline treatment is a key stage in the production of green table olives and its main aim is rapid debittering of the fruit. Its action is complex, with structural changes in both the skin and the pulp, and loss of bioactive components in addition to the bitter glycoside oleuropein. One of the components seriously affected are chlorophylls, which are located mainly in the skin of the fresh fruit. Chlorophyll pigments are responsible for the highly-valued green color typical of table olive specialties not preserved by fermentation. Subsequently, the effect on chlorophylls of nine processes, differentiated by NaOH concentration and/or treatment time, after one year of fruit preservation under refrigeration conditions, was investigated. A direct relationship was found between the intensity of the alkali treatment and the degree of chlorophyll degradation, with losses of more than 60% being recorded when NaOH concentration of 4% or greater were used. Oxidation with opening of the isocyclic ring was the main structural change, followed by pheophytinization and degradation to colorless products. To a lesser extent, decarbomethoxylation and dephytylation reactions were detected. -
Chapter 3 the Title and Subtitle of This Chapter Convey a Dual Meaning
3.1. Introduction Chapter 3 The title and subtitle of this chapter convey a dual meaning. At first reading, the subtitle Photosynthetic Reaction might seem to indicate that the topic of the structure, function and organization of Centers: photosynthetic reaction centers is So little time, so much to do exceedingly complex and that there is simply insufficient time or space in this brief article to cover the details. While this is John H. Golbeck certainly the case, the subtitle is Department of Biochemistry additionally meant to convey the idea that there is precious little time after the and absorption of a photon to accomplish the Molecular Biology task of preserving the energy in the form of The Pennsylvania State University stable charge separation. University Park, PA 16802 USA The difficulty is there exists a fundamental physical limitation in the amount of time available so that a photochemically induced excited state can be utilized before the energy is invariably wasted. Indeed, the entire design philosophy of biological reaction centers is centered on overcoming this physical, rather than chemical or biological, limitation. In this chapter, I will outline the problem of conserving the free energy of light-induced charge separation by focusing on the following topics: 3.2. Definition of the problem: the need to stabilize a charge-separated state. 3.3. The bacterial reaction center: how the cofactors and proteins cope with this problem in a model system. 3.4. Review of Marcus theory: what governs the rate of electron transfer in proteins? 3.5. Photosystem II: a variation on a theme of the bacterial reaction center. -
Chlorophyll and Pheophytin
Application Note: Chlorophyll and Pheophytin INTRODUCTION Chlorophyll, the photosynthetic pigment in all plants, is a fluorescent molecule, thus it can be determined by fluorometry. Fluorometric techniques are now well established for both qualitative and quantitative measurement of the chlorophylls and pheophytins. For many applications, they have replaced the traditional spectrophotometric methods and have made analysis in the field practical. ADVANTAGES Fluorometric methods have many advantages over other methods. As one author stated, "Chlorophyll a was selected because... it is the only index of phytoplankton abundance presently available that can be measured by a continuous in-situ technique..."(1). According to another researcher, "The relative simplicity of these techniques enables much information to be rapidly gathered..." (2). A comparison study conducted by the U.S. Environmental Protection Agency has shown that fluorometric methods compare favorably with spectrophotometric results (3). Fluorometry has the following advantages over spectrophotometry: Sensitivity: Fluorometry is at least 1,000 times more sensitive than the spectrophotometric techniques (4 ,5). Up to 10 liters of water may be required for a single spectrophotometric chlorophyll determination (6, p. 186), but the fluorometer can obtain the same data from samples of 500 ml or less. Sometimes the large volumes required for spectrophotometric determination are nearly impossible to filter because of clogging problems. The spectrophotometric determination of chlorophyll involves filtration, disruption of the cells, and extraction of the chlorophyll, followed by absorbance measurements. The same extraction technique can be used to produce samples for fluorometric determination, with the advantage of greater sensitivity and thus smaller sample requirements. Speed: With a spectrophotometer, one must measure absorbance at several wavelengths (4, 6, p. -
Bilirubin: an Animal Pigment in the Zingiberales and Diverse Angiosperm Orders Cary L
Florida International University FIU Digital Commons FIU Electronic Theses and Dissertations University Graduate School 11-5-2010 Bilirubin: an Animal Pigment in the Zingiberales and Diverse Angiosperm Orders Cary L. Pirone Florida International University, [email protected] DOI: 10.25148/etd.FI10122201 Follow this and additional works at: https://digitalcommons.fiu.edu/etd Part of the Biochemistry Commons, and the Botany Commons Recommended Citation Pirone, Cary L., "Bilirubin: an Animal Pigment in the Zingiberales and Diverse Angiosperm Orders" (2010). FIU Electronic Theses and Dissertations. 336. https://digitalcommons.fiu.edu/etd/336 This work is brought to you for free and open access by the University Graduate School at FIU Digital Commons. It has been accepted for inclusion in FIU Electronic Theses and Dissertations by an authorized administrator of FIU Digital Commons. For more information, please contact [email protected]. FLORIDA INTERNATIONAL UNIVERSITY Miami, Florida BILIRUBIN: AN ANIMAL PIGMENT IN THE ZINGIBERALES AND DIVERSE ANGIOSPERM ORDERS A dissertation submitted in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY in BIOLOGY by Cary Lunsford Pirone 2010 To: Dean Kenneth G. Furton College of Arts and Sciences This dissertation, written by Cary Lunsford Pirone, and entitled Bilirubin: An Animal Pigment in the Zingiberales and Diverse Angiosperm Orders, having been approved in respect to style and intellectual content, is referred to you for judgment. We have read this dissertation and recommend that it be approved. ______________________________________ Bradley C. Bennett ______________________________________ Timothy M. Collins ______________________________________ Maureen A. Donnelly ______________________________________ John. T. Landrum ______________________________________ J. Martin Quirke ______________________________________ David W. Lee, Major Professor Date of Defense: November 5, 2010 The dissertation of Cary Lunsford Pirone is approved. -
Antibacterial Photosensitization Through Activation of PNAS PLUS Coproporphyrinogen Oxidase
Antibacterial photosensitization through activation of PNAS PLUS coproporphyrinogen oxidase Matthew C. Surdela, Dennis J. Horvath Jr.a, Lisa J. Lojeka, Audra R. Fullena, Jocelyn Simpsona, Brendan F. Dutterb,c, Kenneth J. Sallenga, Jeremy B. Fordd, J. Logan Jenkinsd, Raju Nagarajane, Pedro L. Teixeiraf, Matthew Albertollec,g, Ivelin S. Georgieva,e,h, E. Duco Jansend, Gary A. Sulikowskib,c, D. Borden Lacya,d, Harry A. Daileyi,j,k, and Eric P. Skaara,1 aDepartment of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN 37232; bDepartment of Chemistry, Vanderbilt University, Nashville, TN 37232; cVanderbilt Institute for Chemical Biology, Nashville, TN 37232; dDepartment of Biomedical Engineering, Vanderbilt University, Nashville, TN 37232; eVanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, TN 37232; fBiomedical Informatics, Vanderbilt University School of Medicine, Nashville, TN 37203; gDepartment of Biochemistry, Vanderbilt University, Nashville, TN 37232; hDepartment of Electrical Engineering and Computer Science, Vanderbilt University, Nashville, TN 37232; iBiomedical and Health Sciences Institute, University of Georgia, Athens, GA 30602; jDepartment of Microbiology, University of Georgia, Athens, GA 30602; and kDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602 Edited by Ferric C. Fang, University of Washington School of Medicine, Seattle, WA, and accepted by Editorial Board Member Carl F. Nathan June 26, 2017 (received for review January 10, 2017) Gram-positive bacteria cause the majority of skin and soft tissue Small-molecule VU0038882 (‘882) was previously identified in infections (SSTIs), resulting in the most common reason for clinic a screen for activators of the S. aureus heme-sensing system two- visits in the United States. -
Carotene Contents of Isolated Photosystem II Reaction Center Complexes
Photosynthesis Research 52: 69±73, 1997. 69 c 1997 Kluwer Academic Publishers. Printed in the Netherlands. Technical communication A routine method to determine the chlorophyll a, pheophytin a and -carotene contents of isolated Photosystem II reaction center complexes Camiel Eijckelhoff & Jan P. Dekker Department of Physics and Astronomy, Institute of Molecular Biological Sciences, Vrije Universiteit, De Boelelaan 1081, 1081 HV Amsterdam, The Netherlands; Author for correspondence Received 13 February 1997; accepted in revised form 28 March 1997 Key words: chlorophyll, pheophytin, Photosystem II, reaction center Abstract The most simple way in which the stoichiometry of chlorophyll a, pheophytin a and -carotene in isolated Photosystem II reaction center complexes can be determined is by analysis of the spectrum of the extracted pigments in 80% acetone. We present two different calculation methods using the extinction coef®cients of the puri®ed pigments in 80% acetone at different wavelengths. One of these methods also accounts for the possible presence of chlorophyll b. The results are compared with results obtained with HPLC pigment analysis, and indicate that these methods are suitable for routine determination of the pigment stoichiometry of isolated Photosystem II reaction center complexes. Abbreviations: Car ± carotene; Chl ± chlorophyll; HPLC ± high-performance liquid chromatography; Pheo ± pheophytin; PS ± Photosystem; RC ± reaction center Introduction content of the PS II RC complex, since the number and energies of bound chlorophylls seriously affect the The smallest unit of Photosystem II (PS II) capable of interpretations of functional studies of the PS II reac- primary charge separation is the D1±D2-cytochrome tion center, such as those on the primary energy and b-559 reaction center complex (Nanba and Satoh electron transfer reactions (van Gorkom 1995). -
Surprising Roles for Bilins in a Green Alga Jean-David Rochaix1 Departments of Molecular Biology and Plant Biology, University of Geneva,1211 Geneva, Switzerland
COMMENTARY COMMENTARY Surprising roles for bilins in a green alga Jean-David Rochaix1 Departments of Molecular Biology and Plant Biology, University of Geneva,1211 Geneva, Switzerland It is well established that the origin of plastids which serves as chromophore of phyto- can be traced to an endosymbiotic event in chromes (Fig. 1). An intriguing feature of which a free-living photosynthetic prokaryote all sequenced chlorophyte genomes is that, invaded a eukaryotic cell more than 1 billion although they lack phytochromes, their years ago. Most genes from the intruder genomes encode two HMOXs, HMOX1 were gradually transferred to the host nu- andHMOX2,andPCYA.InPNAS,Duanmu cleus whereas a small number of these genes et al. (6) investigate the role of these genes in were maintained in the plastid and gave the green alga Chlamydomonas reinhardtii rise to the plastid genome with its associated and made unexpected findings. protein synthesizing system. The products of Duanmu et al. first show that HMOX1, many of the genes transferred to the nucleus HMOX2, and PCYA are catalytically active were then retargeted to the plastid to keep it and produce bilins in vitro (6). They also functional. Altogether, approximately 3,000 demonstrate in a very elegant way that these nuclear genes in plants and algae encode proteins are functional in vivo by expressing plastid proteins, whereas chloroplast ge- a cyanobacteriochrome in the chloroplast Fig. 1. Tetrapyrrole biosynthetic pathways. The heme nomes contain between 100 and 120 genes of C. reinhardtii, where, remarkably, the and chlorophyll biosynthetic pathways diverge at pro- (1). A major challenge for eukaryotic pho- photoreceptor is assembled with bound toporphyrin IX (ProtoIX). -
Theoretical Study of the Excited States of Chlorin, Bacteriochlorin, Pheophytin A, and Chlorophyll a by the SAC/SAC-CI Method
1320 J. Phys. Chem. B 1998, 102, 1320-1326 Theoretical Study of the Excited States of Chlorin, Bacteriochlorin, Pheophytin a, and Chlorophyll a by the SAC/SAC-CI Method J. Hasegawa, Y. Ozeki, K. Ohkawa, M. Hada, and H. Nakatsuji*,† Department of Synthetic and Biological Chemistry, Faculty of Engineering, Kyoto UniVersity, Sakyo-ku, Kyoto 606-01, Japan ReceiVed: September 4, 1997; In Final Form: NoVember 19, 1997 Excited states of free base chlorin (FBC), free base Bacteriochlorin (FBBC), pheophytin a (Pheo a), and chlorophyll a (Chlo a), which are derivatives of free base porphine (FBP), were calculated by the SAC (symmetry adapted cluster)/SAC-CI (configuration interaction) method. The results reproduced well the experimentally determined excitation energies. The reduction of the outer double bonds in the porphine ring in the order of FBP, FBC, and FBBC causes a breakdown of the symmetry and a narrowing of the HOMO- LUMO gap, which result in a red shift of the Qx band and an increase of its intensity. In the change from Pheo a to Chlo a, the Mg coordination reduces the quasidegeneracy in the Qx state and then increases the spectral intensity. The disappearance of the Qy humps from the absorption spectrum of Pheo a, compared with that of Chlo a, is due to the red shift of the Qy state. Introduction Many biological systems contain porphyrins, chlorins, and bacteriochlorins.1,2 These compounds often take an important part in biochemical reactions, such as light absorption, electron transfer,1 and oxygen transport and storage.2 Because of their scientific importance, they have been the subject of a wide variety of studies.