Theoretical Study of the Excited States of Chlorin, Bacteriochlorin, Pheophytin A, and Chlorophyll a by the SAC/SAC-CI Method
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Influence of Alkaline Treatment on Structural Modifications Of
foods Article Influence of Alkaline Treatment on Structural Modifications of Chlorophyll Pigments in NaOH—Treated Table Olives Preserved without Fermentation Marta Berlanga-Del Pozo, Lourdes Gallardo-Guerrero and Beatriz Gandul-Rojas * Chemistry and Biochemistry of Pigments, Food Phytochemistry, Instituto de la Grasa (CSIC), Campus Universitario Pablo de Olavide, Edificio 46, Ctra. Utrera km 1, 41013 Sevilla, Spain; [email protected] (M.B.-D.P.); [email protected] (L.G.-G.) * Correspondence: [email protected] Received: 28 April 2020; Accepted: 18 May 2020; Published: 1 June 2020 Abstract: Alkaline treatment is a key stage in the production of green table olives and its main aim is rapid debittering of the fruit. Its action is complex, with structural changes in both the skin and the pulp, and loss of bioactive components in addition to the bitter glycoside oleuropein. One of the components seriously affected are chlorophylls, which are located mainly in the skin of the fresh fruit. Chlorophyll pigments are responsible for the highly-valued green color typical of table olive specialties not preserved by fermentation. Subsequently, the effect on chlorophylls of nine processes, differentiated by NaOH concentration and/or treatment time, after one year of fruit preservation under refrigeration conditions, was investigated. A direct relationship was found between the intensity of the alkali treatment and the degree of chlorophyll degradation, with losses of more than 60% being recorded when NaOH concentration of 4% or greater were used. Oxidation with opening of the isocyclic ring was the main structural change, followed by pheophytinization and degradation to colorless products. To a lesser extent, decarbomethoxylation and dephytylation reactions were detected. -
Chapter 3 the Title and Subtitle of This Chapter Convey a Dual Meaning
3.1. Introduction Chapter 3 The title and subtitle of this chapter convey a dual meaning. At first reading, the subtitle Photosynthetic Reaction might seem to indicate that the topic of the structure, function and organization of Centers: photosynthetic reaction centers is So little time, so much to do exceedingly complex and that there is simply insufficient time or space in this brief article to cover the details. While this is John H. Golbeck certainly the case, the subtitle is Department of Biochemistry additionally meant to convey the idea that there is precious little time after the and absorption of a photon to accomplish the Molecular Biology task of preserving the energy in the form of The Pennsylvania State University stable charge separation. University Park, PA 16802 USA The difficulty is there exists a fundamental physical limitation in the amount of time available so that a photochemically induced excited state can be utilized before the energy is invariably wasted. Indeed, the entire design philosophy of biological reaction centers is centered on overcoming this physical, rather than chemical or biological, limitation. In this chapter, I will outline the problem of conserving the free energy of light-induced charge separation by focusing on the following topics: 3.2. Definition of the problem: the need to stabilize a charge-separated state. 3.3. The bacterial reaction center: how the cofactors and proteins cope with this problem in a model system. 3.4. Review of Marcus theory: what governs the rate of electron transfer in proteins? 3.5. Photosystem II: a variation on a theme of the bacterial reaction center. -
Chlorophyll and Pheophytin
Application Note: Chlorophyll and Pheophytin INTRODUCTION Chlorophyll, the photosynthetic pigment in all plants, is a fluorescent molecule, thus it can be determined by fluorometry. Fluorometric techniques are now well established for both qualitative and quantitative measurement of the chlorophylls and pheophytins. For many applications, they have replaced the traditional spectrophotometric methods and have made analysis in the field practical. ADVANTAGES Fluorometric methods have many advantages over other methods. As one author stated, "Chlorophyll a was selected because... it is the only index of phytoplankton abundance presently available that can be measured by a continuous in-situ technique..."(1). According to another researcher, "The relative simplicity of these techniques enables much information to be rapidly gathered..." (2). A comparison study conducted by the U.S. Environmental Protection Agency has shown that fluorometric methods compare favorably with spectrophotometric results (3). Fluorometry has the following advantages over spectrophotometry: Sensitivity: Fluorometry is at least 1,000 times more sensitive than the spectrophotometric techniques (4 ,5). Up to 10 liters of water may be required for a single spectrophotometric chlorophyll determination (6, p. 186), but the fluorometer can obtain the same data from samples of 500 ml or less. Sometimes the large volumes required for spectrophotometric determination are nearly impossible to filter because of clogging problems. The spectrophotometric determination of chlorophyll involves filtration, disruption of the cells, and extraction of the chlorophyll, followed by absorbance measurements. The same extraction technique can be used to produce samples for fluorometric determination, with the advantage of greater sensitivity and thus smaller sample requirements. Speed: With a spectrophotometer, one must measure absorbance at several wavelengths (4, 6, p. -
Chlorophyll Biosynthesis
Chlorophyll Biosynthesis: Various Chlorophyllides as Exogenous Substrates for Chlorophyll Synthetase Jürgen Benz and Wolfhart Rüdiger Botanisches Institut, Universität München, Menziger Str. 67, D-8000 München 19 Z. Naturforsch. 36 c, 51 -5 7 (1981); received October 10, 1980 Dedicated to Professor Dr. H. Merxmüller on the Occasion of His 60th Birthday Chlorophyllides a and b, Protochlorophyllide, Bacteriochlorophyllide a, 3-Acetyl-3-devinylchlo- rophyllide a, Pyrochlorophyllide a, Pheophorbide a The esterification of various chlorophyllides with geranylgeranyl diphosphate was investigated as catalyzed by the enzyme chlorophyll synthetase. The enzyme source was an etioplast membrane fraction from etiolated oat seedlings ( Avena sativa L.). The following chlorophyllides were prepared from the corresponding chlorophylls by the chlorophyllase reaction: chlorophyllide a (2) and b (4), bacteriochlorophyllide a (5), 3-acetyl-3-devinylchlorophyllide a (6), and pyro chlorophyllide a (7). The substrates were solubilized with cholate which reproducibly reduced the activity of chlorophyll synthetase by 40-50%. It was found that the following compounds were good substrates for chlorophyll synthetase: chlorophyllide a and b, 3-acetyl-3-devinylchloro- phyllide a, and pyrochlorophyllide a. Only a poor or no reaction was found with protochloro phyllide, pheophorbide a, and bacteriochlorophyllide. This difference of reactivity was not due to distribution differences of the substrates between solution and pelletable membrane fraction. Furthermore, no interference between good and poor substrate was detected. Structural features necessary for chlorophyll synthetase substrates were discussed. Introduction Therefore no exogenous 2 was applied. The only substrate was 2 formed by photoconversion of endo The last steps of chlorophyll a (Chi a) biosynthe genous Protochlide (1) in the etioplast membrane. -
Carotene Contents of Isolated Photosystem II Reaction Center Complexes
Photosynthesis Research 52: 69±73, 1997. 69 c 1997 Kluwer Academic Publishers. Printed in the Netherlands. Technical communication A routine method to determine the chlorophyll a, pheophytin a and -carotene contents of isolated Photosystem II reaction center complexes Camiel Eijckelhoff & Jan P. Dekker Department of Physics and Astronomy, Institute of Molecular Biological Sciences, Vrije Universiteit, De Boelelaan 1081, 1081 HV Amsterdam, The Netherlands; Author for correspondence Received 13 February 1997; accepted in revised form 28 March 1997 Key words: chlorophyll, pheophytin, Photosystem II, reaction center Abstract The most simple way in which the stoichiometry of chlorophyll a, pheophytin a and -carotene in isolated Photosystem II reaction center complexes can be determined is by analysis of the spectrum of the extracted pigments in 80% acetone. We present two different calculation methods using the extinction coef®cients of the puri®ed pigments in 80% acetone at different wavelengths. One of these methods also accounts for the possible presence of chlorophyll b. The results are compared with results obtained with HPLC pigment analysis, and indicate that these methods are suitable for routine determination of the pigment stoichiometry of isolated Photosystem II reaction center complexes. Abbreviations: Car ± carotene; Chl ± chlorophyll; HPLC ± high-performance liquid chromatography; Pheo ± pheophytin; PS ± Photosystem; RC ± reaction center Introduction content of the PS II RC complex, since the number and energies of bound chlorophylls seriously affect the The smallest unit of Photosystem II (PS II) capable of interpretations of functional studies of the PS II reac- primary charge separation is the D1±D2-cytochrome tion center, such as those on the primary energy and b-559 reaction center complex (Nanba and Satoh electron transfer reactions (van Gorkom 1995). -
Formation of a Square-Planar Co(L) B12 Intermediate Implications for Enzyme Catalysis
Formation of a square-planar Co(l) B12 intermediate Implications for enzyme catalysis Michael D. Wirt, Irit Sagi, and Mark R. Chance Department of Chemistry, Georgetown University, Washington, DC 20057 USA ABSTRACT X-ray edge and extended x-ray absorption fine structure (EXAFS) techniques provide powerful tools for analysis of local molecular structure of complexes in solution. We present EXAFS results for Co(l) B12 that demonstrate a four-coordinate (distorted) square-planar configuration. Comparison of EXAFS solutions for Co(l) and Co(ll) B12 (collected previously; Sagi et al. 1990. J. Am. Chem. Soc. 112:8639-8644) suggest that modulation of the Co - N bond to the axial 5,6-dimethylbenzimidazole (DMB), in the absence of changes in Co - N (equatorial) bond distances, may be a key mechanism in promoting homolytic versus heterolytic cleavage. As Co - C bond homolysis occurs, the Co - N (DMB) bond becomes stronger. However, for heterolytic cleavage to occur, earlier electrochemical studies (D. Lexa and J. M. Saveant. 1976. J. Am. Chem. Soc. 98:2652-2658) and recent studies of methylcobalamin- dependent Clostridium thermoaceticum (Ragsdale et al. 1987. J. Biol. Chem. 262:14289-14297) suggest that removal of the DMB ligand (before Co - C bond cleavage) favors formation of the four-coordinate square-planar Co(l) species while inhibiting formation of the five-coordinate Co(ll) B12 complex. This paper presents the first direct evidence that formation of the Co(l) B12 intermediate must involve breaking of the Co -N (DMB) bond. INTRODUCTION 5'-Deoxyadenosylcobalamin (AdoCbl) (Fig. 1) functions nism of Co - C bond cleavage and the formation of as an essential cofactor for enzyme reactions involving four-coordinate Co(I) B12 intermediates. -
EPR Studies of Photosystem II
% !" #$%&!$! "!%" &!" '()(*()) ) +,!$$-$ ..V 2 ISBN C D E E F C F ! "# $ " % # "$ &'()" "*+,'-(. "/ GHJ K LK MM FM O P Till Sven och Freja List of Papers This thesis is based on the following published papers and manuscripts, which are referred to in the text by their Roman numerals. I Havelius, K. G. V., Su, J.-H., Feyziyev, Y., Mamedov, F. and Styring, S. (2006) The spectral resolution of the split EPR- signals induced by illumination at 5 K from the S1, S3 and S0 states of photosystem II, Biochemistry, 45:9279–9290. II Su, J.-H., Havelius, K. G. V., Feyziyev, Y., Mamedov, F., Ho, F. M. and Styring S. (2006) Split EPR signals from photosys- tem II are modified by methanol, reflecting S state dependent binding and alterations in the magnetic coupling in the CaMn4 cluster, Biochemistry, 45:7617–7627. III Havelius, K. G. V. and Styring, S. (2007) pH dependent compe- tition between YZ and YD in photosystem II probed by illumina- tion at 5 K, Biochemistry, 46:7865–7874. IV Su, J.-H., Havelius, K. G. V., Ho, F. M., Han, G., Mamedov, F. and Styring, S. (2007) Formation spectra of the EPR split signal from S0, S1 and S3 States in photosystem II induced by mono- chromatic light at 5 K, Biochemistry, 46:10703-10712. V Han, G., Ho, F. M., Havelius, K. G. V., Morvaridi, S. F., Ma- medov, F. and Styring, S. (2008) Direct quantification of the four individual S states in photosystem II using EPR spectros- copy, Biochim. Biophys. Acta, 1777:496-503. VI Havelius, K. -
Identification, Isolation and Antioxidant Activity of Pheophytin from Green Tea (Camellia Sinensis (L.) Kuntze)
Available online at www.sciencedirect.com ScienceDirect Procedia Chemistry 14 ( 2015 ) 232 – 238 2nd Humboldt Kolleg in conjunction with the International Conference on Natural Sciences, HK-ICONS 2014 Identification, Isolation and Antioxidant Activity of Pheophytin from Green Tea (Camellia sinensis (L.) Kuntze) Lia Kusmitaa, Ika Puspitaningruma, Leenawaty Limantarab* aSTIFAR “Yayasan Pharmasi”, Letjend Sarwo Edie Wibowo KM 1, Semarang 50193 bMa Chung Research Center for Photosyntehtic Pigments, Ma Chung University, Villa Puncak Tidar N 1,Malang 65151 Abstract Tea is a plant that can grow in different countries in the world. Green tea is one of the types of tea which is most beneficial for health such as anticarcinogenic, antibacterial, antitumor, antivirus, and antioxidant. In this research, identification of green tea pigments (Camellia sinensis (L.) Kuntze) were conducted by using thin-layer chromatography (TLC) and high-performance liquid chromatography (HPLC) equipped with photodiode array detector. By TLC analysis, five spots were detected and they were β-carotene, pheophytin a, chlorophyll b, xanthophyll, and pheophorbide a. An analysis using HPLC showed the existence of 14 peaks consisting of 10 chlorophyll peaks and their derivatives as well as four carotenoid peaks. Pheophytin isolation was conducted using column chromatography and antioxidant activity was assayed using 2,2-diphenyl-1-picrylhydrazyl (DPPH) –1 method. Antioxidant activity of pheophytin a IC50 = (573 ± 0.23) mg · L corresponded to that of β-carotene marker IC50 = –1 –1 (550 ± 0.26) mg · L . Antioxidant activity of the green tea crude extract had IC50 = (250 ± 0.21) mg · L which was twice higher than β-carotene marker. © 2015 Published by Elsevier B.V. -
Structural Aspects of Porphyrins for Functional Materials Applications
crystals Review Structural Aspects of Porphyrins for Functional Materials Applications Lawrence Cook 1,2,*, Greg Brewer 2 and Winnie Wong-Ng 3 ID 1 Department of Materials Science and Engineering, The Catholic University of America, Washington, DC 20064, USA 2 Department of Chemistry, The Catholic University of America, Washington, DC 20064, USA; [email protected] 3 Materials Measurement Science Division, National Institute of Standards and Technology, Gaithersburg, MD 20899, USA; [email protected] * Correspondence: [email protected]; Tel.: +1-202-319-5535 Academic Editor: Helmut Cölfen Received: 19 April 2017; Accepted: 12 July 2017; Published: 15 July 2017 Abstract: Porphyrinic compounds comprise a diverse group of materials which have in common the presence of one or more cyclic tetrapyrroles known as porphyrins in their molecular structures. The resulting aromaticity gives rise to the semiconducting properties that make these compounds of interest for a broad range of applications, including artificial photosynthesis, catalysis, molecular electronics, sensors, non-linear optics, and solar cells. In this brief review, the crystallographic attributes of porphyrins are emphasized. Examples are given showing how the structural orientations of the porphyrin macrocycle, and the inter-porphyrin covalent bonding present in multiporphyrins influence the semiconducting properties. Beginning with porphine, the simplest porphyrin, we discuss how the more complex structures that have been reported are described by adding peripheral substituents and internal metalation to the macrocycles. We illustrate how the conjugation of the π-bonding, and the presence of electron donor/acceptor pairs, which are the basis for the semiconducting properties, are affected by the crystallographic topology. Keywords: porphyrin; metalloporphyrin; crystal structure; crystallography; semiconductor; electrical conductivity; molecular electronics; covalent bonding; π-bonding; conjugation 1. -
Continuous Chlorophyll Degradation Accompanied by Chlorophyllide and Phytol Reutilization for Chlorophyll Synthesis in Synechocystis Sp
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Biochimica et Biophysica Acta 1767 (2007) 920–929 www.elsevier.com/locate/bbabio Continuous chlorophyll degradation accompanied by chlorophyllide and phytol reutilization for chlorophyll synthesis in Synechocystis sp. PCC 6803 ⁎ Dmitrii Vavilin, Wim Vermaas School of Life Sciences and Center for the Study of Early Events in Photosynthesis, Arizona State University, Box 874501, Tempe, AZ 85287, USA Received 3 January 2007; received in revised form 23 March 2007; accepted 27 March 2007 Available online 3 April 2007 Abstract Chlorophyll synthesis and degradation were analyzed in the cyanobacterium Synechocystis sp. PCC 6803 by incubating cells in the presence of 13C-labeled glucose or 15N-containing salts. Upon mass spectral analysis of chlorophyll isolated from cells grown in the presence of 13C-glucose for different time periods, four chlorophyll pools were detected that differed markedly in the amount of 13C incorporated into the porphyrin (Por) and phytol (Phy) moieties of the molecule. These four pools represent (i) unlabeled chlorophyll (12Por12Phy), (ii) 13C-labeled chlorophyll (13Por13Phy), and (iii, iv) chlorophyll, in which either the porphyrin or the phytol moiety was 13C-labeled, whereas the other constituent of the molecule remained unlabeled (13Por12Phy and 12Por13Phy). The kinetics of 12Por12Phy disappearance, presumably due to chlorophyll de- esterification, and of 13Por12Phy, 12Por13Phy, and 13Por13Phy accumulation due to chlorophyll synthesis provided evidence for continuous chlorophyll turnover in Synechocystis cells. The loss of 12Por12Phy was three-fold faster in a photosystem I-less strain than in a photosystem II- less strain and was accelerated in wild-type cells upon exposure to strong light. -
Bacteriopheophytin G
Proc. Nati. Acad. Sci. USA Vol. 84, pp. 2570-2574, May 1987 Chemistry Bacteriopheophytin g: Properties and some speculations on a possible primary role for bacteriochlorophylls b and g in the biosynthesis of chlorophylls (photoisomerization/esterifying alcohol/electron spin resonance) T. J. MICHALSKI, J. E. HUNT, M. K. BOWMAN, U. SMITH, K. BARDEEN, H. GEST*, J. R. NORRIS, AND J. J. KATZ Chemistry Division, Argonne National Laboratory, Argonne, IL 60439 Contributed by J. J. Katz, January 14, 1987 ABSTRACT Bacteriopheophytin g and small amounts of characterized Bpheog by HPLC, and 252CF plasma desorp- bacteriochlorophyll g have been obtained in high purity from tion mass spectrometry (252Cf-PDMS). We have also studied the recently discovered photosynthetic bacterium Heliobacte- triplet Bpheog (3Bpheog) and the cation free radical BPheog' rium chlorum. Preparative methods and precautions in han- by ESR. Because of the high current interest in the structure dling these sensitive compounds are described. The compounds of bacterial photosynthetic reaction centers (6, 7), the reac- have been characterized by californium-252 plasma desorption tion center of H. chlorum has quickly attracted attention mass spectrometry, HPLC, visible absorption, and electron (8-10). The extreme sensitivity of BChlg to light and air was spin resonance spectroscopy. Our results agree with the struc- not adequately taken into consideration in the early reaction ture of bacteriochlorophyli g advanced by H. Brockmann and center work, and it will be necessary to do so in future A. Lipinski [(1983) Arch. Microbiol. 136, 17-191, with the reaction center research on this organism. exception that we find the esterifying alcohol to be farnesol and not geranylgeraniol as originally suggested. -
Nomenclature of Tetrapyrroles
Pure & Appi. Chem. Vol.51, pp.2251—2304. 0033-4545/79/1101—2251 $02.00/0 Pergamon Press Ltd. 1979. Printed in Great Britain. PROVISIONAL INTERNATIONAL UNION OF PURE AND APPLIED CHEMISTRY and INTERNATIONAL UNION OF BIOCHEMISTRY JOINT COMMISSION ON BIOCHEMICAL NOMENCLATURE*t NOMENCLATURE OF TETRAPYRROLES (Recommendations, 1978) Prepared for publication by J. E. MERRITT and K. L. LOENING Comments on these proposals should be sent within 8 months of publication to the Secretary of the Commission: Dr. H. B. F. DIXON, Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge CB2 1QW, UK. Comments from the viewpoint of languages other than English are encouraged. These may have special significance regarding the eventual publication in various countries of translations of the nomenclature finally approved by IUPAC-IUB. PROVISIONAL IUPAC—ITJB Joint Commission on Biochemical Nomenclature (JCBN), NOMENCLATUREOF TETRAPYRROLES (Recommendations 1978) CONTENTS Preface 2253 Introduction 2254 TP—O General considerations 2256 TP—l Fundamental Porphyrin Systems 1.1 Porphyrin ring system 1.2 Numbering 2257 1.3 Additional fused rings 1.4 Skeletal replacement 2258 1.5 Skeletal replacement of nitrogen atoms 2259 1.6Fused porphyrin replacement analogs 2260 1.7Systematic names for substituted porphyrins 2261 TP—2 Trivial names and locants for certain substituted porphyrins 2263 2.1 Trivial names and locants 2.2 Roman numeral type notation 2265 TP—3 Semisystematic porphyrin names 2266 3.1 Semisystematic names in substituted porphyrins 3.2 Subtractive nomenclature 2269 3.3 Combinations of substitutive and subtractive operations 3.4 Additional ring formation 2270 3.5 Skeletal replacement of substituted porphyrins 2271 TP—4 Reduced porphyrins including chlorins 4.1 Unsubstituted reduced porphyrins 4.2 Substituted reduced porphyrins.