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Actinopterygian Tree with Divergence Times Based on the Whole Mitochondrial Genome Sequences Jan

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Actinopterygian Tree with Divergence Times Based on the Whole Mitochondrial Genome Sequences Jan Actinopterygian tree with divergence times based on the whole mitochondrial genome sequences Jan. 27. 2015. Jun Inoue Orders #17–60 (Nelson 2006) Genus Common name 17.Polypteriformes Polypteridae ポリプテルス科 Erpetoichthys Reedfish Inoue 05 ロープフィッシュ 82(66-101) Polypterus Bichir ポリプテルス Polyodontidae ヘラチョウザメ科 Polyodon Paddlefish Chondrostei 18.Acipenseriformes ヘラチョウザメ Acipenseridae チョウザメ科 Scaphirhynchus Shovelnose sturgeon Actinopterygii 114(92-144) Inoue 05 65(47-89) Acipenser Sturgeon 428(417-448) チョウザメ Azuma 08 19.Lepisosteiformes Lepisosteidae ガ ー パイク 科 Lepisosteus Spotted gar Holostei Azuma 08 33(24-44) Atractosteus Alligator gar ガーパイク 20.Amiiformes 339(315-360) Amia Amia (personal com.) アミア 21.Hiodontiformes Hiodontidae ハイオドン科 Actinopteri Hiodon Goldeye 381(364-392) ハイオドン Osteoglossomorpha Pantodontidae パントドン 科 Pantodon Azuma 08 22.Osteoglossiformes Butterflyfish パントドン (personal com.) 253(228-277) アロワナ目 Osteoglossidae Arapaima Arowana Inoue 09 201(176-226) Osteoglossum Gymnarchidae ギムナーカス科 アロワナ Mormyroidea Gymnarchus Neopterygii 179(155-204) Mormyridae モルミルス科 ジムナーカス 142(120-165) Gnathonemus モルミルス 360(339-376) 162(138-186) Notopteridae ナギナタナマズ科 Azuma 08 Notopterus ナギナタナマズ Elopidae カライワシ科 23.Elopiformes カライワシ目 Elops Megalopidae イセゴイ科 カライワシ Inoue 04 Megalops イセゴイ Albulidae ソトイワシ 科 Albula Elopomorpha 24.Albuliformes ソトイワシ目 Albulidae ソトイワシ Pterothrissus ハモ ウミヘビ ギス Teleostei 228(199-262) Inoue 04 Notacanthiformes ソコギス目 Notacanthidae Aldrovandia Inoue 05 324(300-344) Notacanthus Deep-sea spiny eel トカゲギス Azuma 08 Muraenidae ウツボ科 ソコギス Gymnothorax Moray eel ウツボ (personal com.) Congridae アナゴ科 シギウナギ アナゴ 25.Anguilliformes Conger Conger eel Ophichthidae ウミヘビ科 ウミヘビ ウナギ目 Ophisurus Snake eel Inoue 04 Inoue 01 Muraenesocidae ノコバウナギ ハモ科 Muraenesox Anguillidae ウナギ科 Anguilla Freshwater eel 26.Saccopharyngiformes Eurypharyngidae フウセンウナギ科 ウナギ Eurypharynx フクロウナギ Engraulidae カタクチイワシ科 Elopocephala 27.Clupeiformes ニシン目 Engraulis Anchovy カタクチイワシ Clupeidae ニシン科 307(282-328) Otomorpha (Otocephala) Sardinops Sardine Azuma 08 244(216-271) Alepocephaliformes セキトリイワシ目 マイワシ ( ニシン科 ) (personal com.) Azuma 08 28.Gonorynchiformes ネズミギス目 (personal com.) Cobitoidea Balitoridae タニノボリ科 Formosania Loach 29.Cypriniformes コイ目 Ostariophysi Nakatani 11 Cyprinidae コイ科 ( タニノボリ科 ) Azuma 08 Cyprinus Carp 139(111-169) Danio Zebrafish コイ 32.Gymnotiformes 248(227-268) ゼブラフィッシュ ( コイ科 ) Nakatani 11 Ctenoluciidae Boulengerella Pike-characid Clupeocephala 30.Characiformes カラシン目 Characidae Astyanax Cave fish 276(250-301) 226(206-245) Nakatani 11 31.Siluriformes ナマズ目 Pimelodidae ピメロドゥス科 Azuma 08 Pimelodus Long-whiskered catfish ドウクツギョ ( カラシン科 ) Lepidogalaxiiformes 36.Esociformes Esocidae カワカマス目 Esox Northern pike Protacanthopterygii カワカマス Coregonus Lake whitefish Ishiguro 03 35.Salmoniformes サケ目 Euteleostei Salvelinus Salvelinus Ishiguro 03 タイセイヨウサケ Miya 14 Ishiguro 03 Oncorhynchus Rainbow trout 33.Argentiniformes ニギス目 ニジマス 34.Osmeriformes キュウリウオ目 Plecoglossidae アユ科 Stomiatii Plecoglossus Ayu 249(223-274) Chauliodontidae ホウライエソ科 アユ 37.Stomiiformes ワニトカゲギス目 Chauliodus Azuma 08 ホウライエソ Gonostomatidae ヨコエソ科 Sigmops ヨコエソ 38.Ateleopodiformes シャチブリ目 Ateleopodidae シャチブリ科 Ateleopus Jellynose fish シャチブリ 39.Aulopiformes ヒメ目 Chlorophthalmidae Chlorophthalmus Greeneye Synodontidae エソ科 アオメエソ Harpadon ミズテング ( エソ科 ) 40.Myctophiformes ハダカイワシ目 Myctophidae ハダカイワシ科 Neoteleostei Myctophum スズキハダカ ( ハダカイワシ科 ) Miya 14 ツノハダカ ( ハダカイワシ科 ) Regalecidae リュウグ ウノツカ イ 科 41.Lampriformes アカマンボウ目 Regalecus Ribbonfish Lampridae アカマンボウ科 Eurypterygii Lampris Opah リュウグウノツカイ 42.Polymixiiformes ギンメダイ目 Polymixiidae アカマンボウ Miya 14 Polymixia Beardfish 43.Percopsiformes ギンメダイ Paracanthopterygii サケスズキ目 54.Zeiformes マトウダイ目 Zeidae Zeus John dory Miya 07 Macrouridae マトウダイ ソコダラ科 Caelorinchus Ctenosquamata 44.Gadiformes タラ目 ムグラヒゲ ( ソコダラ科 ) Miya 14 Gadidae タラ科 Theragra Alaska pollack Gadus Cod タラ Trachichthyidae ヒウチダイ科 Hoplostethus Monocentridae マツカサウオ科 53.Beryciformes Monocentris Pinecone fish ヒウチダイ Berycidae キンメダイ科 Azuma 08 Beryx Alfonsino Acanthomorpha Miya 14 Holocentridae イットウダイ 科 Sargocentron Squirrelfish 191(166-216) Melamphaidae カブトウオ科 キンメダイ Azuma 08 52.Stephanoberyciformes クジラウオ目 Poromitra Rondeletiidae アンコウイワシ科 Rondeletia loricata カブトウオ アカチョッキクジラウオ 45.Ophidiiformes ( アンコウイワシ科 ) 46. Batrachoidiformes 59.Pleuronectiformes カレイ目 Paralichthyidae ヒラメ科 Paralichthys Flatfishes E Acanthopterygii Microstomus ヒラメ Carangiformes Carangidae Dover sole 182(157-206) Song 14 Miya 03 アジ科 Seriola Jack Azuma 08 Arripidea マアジ F Nomeidae エボシダイ科 クロマグロ Pelagia Scombriformes Scombridae サバ科 ( サバ科 ) タイセイヨウサバ Miya 13 Katsuwonus Katsuwonus Percomorpha Kurtiformes Apogonidae テンジクダイ科 カツオ Near 13 Pterapogon Pterapogon ≈58.Perciformes C Gobiiformes Gobiidae ハゼ科 Tridentiger Tridentiger トビハゼ D Syngnathiformes ヨウジウオ目 Dactylopteridae Song Song 14 Dactyloptena Dactyloptena 14 A 56.Synbranchiformes タウナギ目 Synbranchidae タウナギ科 : Broadly accepted node Monopterus albus Az 08 タウナギ 48.Mugiliformes Mugilidae ボラ科 Miya M, Nishida M. (2014). The mitogenomic contributions to molecular Mugil phylogenetics and evolution of fishes: A 15-year retrospect. Ichthyological Aplocheiloidei Aplocheilidae Aplocheilus Killifish ボラ Research 61:1–43. 51.Cyprinodontiformes B Goodeidae Xenotoca Splitfin ––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––– カダヤシ目 Cyprinodontidae Azuma Y, Kumazawa Y, Miya M, Mabuchi K, Nishida M (2008) Jordanella Pupfish Azuma 08: Stm 09 Cyprinodontoidei Poeciliidae Mitogenomic evaluation of the historical biogeography of cichlids toward カダヤシ科 Xiphophorus Platyfish 124 (personal com.) プラティー reliable dating of teleostean divergences. BMC Evol Biol 8:215. Atherinopsidae Menidia Neotropical silverside (115-138) 49.Atheriniformes Inoue 05: Inoue JG, Miya M, Venkatesh B, Nishida M (2005) The Atherino- Melanotaeniidae mitochondrial genome of Indonesian coelacanth Latimeria menadoensis morpha トウゴロウイワシ目 Melanotaenia Blue eye Isonidae (Sarcopterygii: Coelacanthiformes) and divergence time estimation between 136 ナミノハ ナ 科 Iso the two coelacanths. Gene 349:227–235 (115-159) Scomberesocidae サンマ科 Cololabis Saury Azuma 08 サンマ Inoue 09: Inoue JG, Kumazawa Y, Miya M, Nishida M (2009) The historical Exocoetidae トビウオ科 Exocoetus Flyingfish biogeography of the freshwater knifefishes using mitogenomic approaches: ダツ目 Hemiramphidae トビウオ a Mesozoic origin of the Asian notopterids (Actinopterygii: Stm 09 Hyporhamphus Halfbeak 50.Beloniformes Oryzias O.luzonensis Osteoglossomorpha). Mol Phylogenet Evol 51:486–499 118(106-130) Northern O.latipes (HNI) Ishiguro NB, Miya M, Nishida M (2003) Basal euteleostean 41(33-50) Southern O.latipes (Hd-rR) Medaka Ishiguro 03: 18(13-24) メダカ relationships: a mitogenomic perspective on the phylogenetic reality of the Pomacentridae スズメダイ科 Abudefduf ‘‘Protacanthopterygii’’ . Mol Phylogenet Evol 27:476–488 Azuma 08 Miya 03: Miya M, Takeshima H, Endo H, Ishiguro NB, Inoue JG, Mukai T, Amphiprion Anemonefish 159 (136-183) Satoh TP, Yamaguchi M, Kawaguchi A, Mabuchi K, Shirai SM, Nishida M 127 Indo/Sri Lanka Azuma 08 87(69-106) Etroplus (2003) Major patterns of higher teleostean phylogenies: a new perspective Azuma 08 (107-149) Madagascar Etroplinae Paretroplus based on 100 complete mitochondrial DNA sequences. Mol Phylogenet Madagascar Etroplinae Paratilapia Evol 26:121–138 Cichlidae Ptychochrominae Ptychochromoides Miya 13: Miya M, Friedman M, Satoh TP, Takeshima H, Sado T, Iwasaki W, カワスズメ科 South America Cichlasomatinae;Heroini Hypselecara Astronotinae;Astronotini Yamanoue Y, Nakatani M, Mabuchi K, Inoue JG, Poulsen JY, Fukunaga T, 96(78-115) Astronotus Nishida M (2013) Evolutionary origin of the Scombridae (tunas and Tylochromini Tylochromis 89(72-108) Africa Oreochromini Oreochromis Tilapia mackerels): members of a Paleogene adaptive radiation with 14 other Pseudocrenilabrinae Tropheini pelagic fish families. PLoS ONE 8:e73535. Tropheus ティラピア Neolamprologus Nakatani 11: Nakatani M, Miya M, Mabuchi K, Saitoh K, Nishida M (2011) Lamprologini Julidochromis Evolutionary history of Otophysi (Teleostei), a major clade of the modern Sturmbauer 10 freshwater fishes: Pangaean origin and Mesozoic radiation. BMC Evol Biol 11:177 Serranoidei Serranidae ハタ科 Epinephelus Grouper Poulsen 13: Poulsen JY, Byrkjedal I, Willassen E, Rees D, Takeshima H, Satoh Notothenioidei Nototheniidae ノトセニア 科 TP, Shinohara G, Nishida M, Miya M (2013) Mitogenomic sequences and Notothenia Atlantic icefish タマカイ ( ハタ科 ) Near 13 55.Gasterosteiformes Gasterosteidae トゲウオ科 evidence from unique gene rearrangements corroborate evolutionary G Gasterosteus Stickleback relationships of Myctophiformes (Neoteleostei). BMC Evol Biol 13:111. Song 14 57.Scorpaeniformes Scorpaenidae フサカサゴ科 Helicolenus Scorpion fish イトヨ Song 14: Song HY, Mabuchi K, Satoh TP, Moore JA, Yamanoue Y, Miya M, 154 (131-177) カサゴ目 ユメカサゴ Nishida M (2014) Mitogenomic circumscription of a novel percomorph fish Azuma 08 Labridae ベラ科 Cheilinus clade mainly comprising ‘‘Syngnathoidei’’ (Teleostei). Gene 542:146–155 Pseudolabrus Wrasse Azuma 08 Stm 09: Setiamarga DHE, Miya M, Inoue JG, Ishiguro NB, Mabuchi K, Nishida Halichoeres メガネモチノウオ Chaetodontiformes Chaetodontidae チョウチョウウオ科 ( ベラ科 ) M (2009) Divergence time of the two regional medaka populations in Japan Azuma 08 Chaetodon Butterflyfish as a new time scale for comparative genomics of vertebrates. Biol Lett Sparidae タイ科 5:81–86 Pagrus Red seabream Near 13 H 47.Lophiiformes アンコウ目 Ogcocephalidae アカグツ科 タイ Sturmbauer 10: Sturmbauer C, Salzburger W, Duftner N, Schelly R, & Ogcocephalus Batfish Koblmuller S (2010) Evolutionary history of the Lake Tanganyika cichlid Song 14 Tetraodontidae フグ科 ミドリフグ tribe Lamprologini (Teleostei: Perciformes) derived from mitochondrial and Tetraodon nuclear DNA data. Mol. Phylogenet. Evol. 57(1):266-284. 70 (55-86) Tekifugu 60.Tetraodontiformes Monacanthidae カワハギ科 Azuma 08 トラフグ Yamanoue 08 Stephanolepis Threadsail filefish カワハギ.
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