Flagellar Autofluorescence in Forty-Four Chlorophyll C-Containing Algae
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APPENDIX C-3 Periphyton Taxonomical and Density Data, 2010
KITSAULT MINE PROJECT ENVIRONMENTAL ASSESSMENT APPENDICES APPENDIX C-3 Periphyton Taxonomical and Density Data, 2010 VE51988 – Appendices Table C-3-1: Periphyton Taxonomic Composition And Density (#cells/ml) Data In Lakes, Kitsault Mine Project, 2010 FES Sample # 100534 100535 100536 100537 100538 100539 100540 100541 100542 100543 100544 100545 100546 100547 100548 Date 31-Aug- 31-Aug- 31-Aug- 31-Aug- 31-Aug- Units: # cells/ml 5-Sep-10 5-Sep-10 5-Sep-10 5-Sep-10 5-Sep-10 4-Sep-10 4-Sep-10 4-Sep-10 4-Sep-10 4-Sep-10 10 10 10 10 10 Area Sampled (cm2) 19.635 19.635 19.635 19.635 19.635 19.635 19.635 19.635 19.635 19.635 19.635 19.635 19.635 19.635 19.635 Location LC3-10 LC3-10 LC3-10 LC3-10 LC3-10 PC PC PC PC PC L901-O L901-O L901-O L901-O L901-O Taxonomy Order Sample 1 2 3 4 5 1 2 3 4 5 1 2 3 4 5 Phylum Genera and Species Chrysophyta Centrales Melosira sp. <45.5 Bacillariophycae Pennales Achnanthes flexella (diatoms) Achnanthes lanceolata <18.4 <15.9 <20.2 Achnanthes minutissima 4,147.0 4,442.4 1,237.6 5,014.4 <25.8 8,590.0 6,516.8 1,221.6 1,684.0 23,059.8 48.7 Achnanthes spp. 858.0 370.2 309.4 470.1 111.6 407.3 39.4 <21.7 332.9 97.4 Amphipleura pellucida Anomoeoneis spp. -
University of Oklahoma
UNIVERSITY OF OKLAHOMA GRADUATE COLLEGE MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION SUBMITTED TO THE GRADUATE FACULTY in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY By JOSHUA THOMAS COOPER Norman, Oklahoma 2017 MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION APPROVED FOR THE DEPARTMENT OF MICROBIOLOGY AND PLANT BIOLOGY BY ______________________________ Dr. Boris Wawrik, Chair ______________________________ Dr. J. Phil Gibson ______________________________ Dr. Anne K. Dunn ______________________________ Dr. John Paul Masly ______________________________ Dr. K. David Hambright ii © Copyright by JOSHUA THOMAS COOPER 2017 All Rights Reserved. iii Acknowledgments I would like to thank my two advisors Dr. Boris Wawrik and Dr. J. Phil Gibson for helping me become a better scientist and better educator. I would also like to thank my committee members Dr. Anne K. Dunn, Dr. K. David Hambright, and Dr. J.P. Masly for providing valuable inputs that lead me to carefully consider my research questions. I would also like to thank Dr. J.P. Masly for the opportunity to coauthor a book chapter on the speciation of diatoms. It is still such a privilege that you believed in me and my crazy diatom ideas to form a concise chapter in addition to learn your style of writing has been a benefit to my professional development. I’m also thankful for my first undergraduate research mentor, Dr. Miriam Steinitz-Kannan, now retired from Northern Kentucky University, who was the first to show the amazing wonders of pond scum. Who knew that studying diatoms and algae as an undergraduate would lead me all the way to a Ph.D. -
Biology and Systematics of Heterokont and Haptophyte Algae1
American Journal of Botany 91(10): 1508±1522. 2004. BIOLOGY AND SYSTEMATICS OF HETEROKONT AND HAPTOPHYTE ALGAE1 ROBERT A. ANDERSEN Bigelow Laboratory for Ocean Sciences, P.O. Box 475, West Boothbay Harbor, Maine 04575 USA In this paper, I review what is currently known of phylogenetic relationships of heterokont and haptophyte algae. Heterokont algae are a monophyletic group that is classi®ed into 17 classes and represents a diverse group of marine, freshwater, and terrestrial algae. Classes are distinguished by morphology, chloroplast pigments, ultrastructural features, and gene sequence data. Electron microscopy and molecular biology have contributed signi®cantly to our understanding of their evolutionary relationships, but even today class relationships are poorly understood. Haptophyte algae are a second monophyletic group that consists of two classes of predominately marine phytoplankton. The closest relatives of the haptophytes are currently unknown, but recent evidence indicates they may be part of a large assemblage (chromalveolates) that includes heterokont algae and other stramenopiles, alveolates, and cryptophytes. Heter- okont and haptophyte algae are important primary producers in aquatic habitats, and they are probably the primary carbon source for petroleum products (crude oil, natural gas). Key words: chromalveolate; chromist; chromophyte; ¯agella; phylogeny; stramenopile; tree of life. Heterokont algae are a monophyletic group that includes all (Phaeophyceae) by Linnaeus (1753), and shortly thereafter, photosynthetic organisms with tripartite tubular hairs on the microscopic chrysophytes (currently 5 Oikomonas, Anthophy- mature ¯agellum (discussed later; also see Wetherbee et al., sa) were described by MuÈller (1773, 1786). The history of 1988, for de®nitions of mature and immature ¯agella), as well heterokont algae was recently discussed in detail (Andersen, as some nonphotosynthetic relatives and some that have sec- 2004), and four distinct periods were identi®ed. -
The Phytoplankton of an Enriched, Soft-Water Lake Subject to Intermittent Hydraulic Flushing
The phytoplankton of an enriched, soft- water lakel subject to intermittent hydraulic flushing (Grasmere, English Lake District) Item Type monograph Authors Reynolds, C.S.; Lund, J.W.G. Publisher Freshwater Biological Association Download date 01/10/2021 05:29:43 Link to Item http://hdl.handle.net/1834/22651 The Phytoplankton of an enriched, soft-water lake subject to intermittent hydraulic flushing. (Grasmere, English Lake District) by C.S. Reynolds and J.W.G. Lund Project Leader : C.S. Reynolds Report Date : November 1987 Report to : North West Water FBA Report Ref No. Wl/207/5 FBA Project No. 207 The phytoplankton of an enriched, soft-water lake subject to intermittent hydraulic flushing (Grasmere, English Lake District). C.S. REYNOLDS and J.W.G. LUND, Freshwater Biological Association, Windermere Laboratory, Ambleside, Cumbria LA22 OLP, U.K. Running Head : Phytoplankton of Grasmere Correspondence : C.S. Reynolds, Freshwater Biological Association, Windermere Laboratory, Ambleside, Cumbria, LA22 OLP 2 SUMMARY 1. The abundance and species composition of the phytoplankton of Grasmere were monitored over a 12-year period following the commissioning of a small sewage treatment works, upstream of the lake. 2. Although Grasmere has been subject to increased phosphorus-loading and has quickly developed many features associated with eutrophication, the composition of its plankton has retained the characteristics of a mesotrophic, soft-water lake: a vernal diatom maximum, generally dominated by Asterionella, is followed by summer growths of nanoplanktonic species, of various colonial Chlorophyceae, before a substantial return to Asterionella-dominance in the autumn. In cooler summers, there have been episodes of renewed diatom growth, followed by truncated recapitulations of the essential summer sequence. -
Predatory Flagellates – the New Recently Discovered Deep Branches of the Eukaryotic Tree and Their Evolutionary and Ecological Significance
Protistology 14 (1), 15–22 (2020) Protistology Predatory flagellates – the new recently discovered deep branches of the eukaryotic tree and their evolutionary and ecological significance Denis V. Tikhonenkov Papanin Institute for Biology of Inland Waters, Russian Academy of Sciences, Borok, 152742, Russia | Submitted March 20, 2020 | Accepted April 6, 2020 | Summary Predatory protists are poorly studied, although they are often representing important deep-branching evolutionary lineages and new eukaryotic supergroups. This short review/opinion paper is inspired by the recent discoveries of various predatory flagellates, which form sister groups of the giant eukaryotic clusters on phylogenetic trees, and illustrate an ancestral state of one or another supergroup of eukaryotes. Here we discuss their evolutionary and ecological relevance and show that the study of such protists may be essential in addressing previously puzzling evolutionary problems, such as the origin of multicellular animals, the plastid spread trajectory, origins of photosynthesis and parasitism, evolution of mitochondrial genomes. Key words: evolution of eukaryotes, heterotrophic flagellates, mitochondrial genome, origin of animals, photosynthesis, predatory protists, tree of life Predatory flagellates and diversity of eu- of the hidden diversity of protists (Moon-van der karyotes Staay et al., 2000; López-García et al., 2001; Edg- comb et al., 2002; Massana et al., 2004; Richards The well-studied multicellular animals, plants and Bass, 2005; Tarbe et al., 2011; de Vargas et al., and fungi immediately come to mind when we hear 2015). In particular, several prevailing and very abun- the term “eukaryotes”. However, these groups of dant ribogroups such as MALV, MAST, MAOP, organisms represent a minority in the real diversity MAFO (marine alveolates, stramenopiles, opistho- of evolutionary lineages of eukaryotes. -
The Apicoplast: a Review of the Derived Plastid of Apicomplexan Parasites
Curr. Issues Mol. Biol. 7: 57-80. Online journalThe Apicoplastat www.cimb.org 57 The Apicoplast: A Review of the Derived Plastid of Apicomplexan Parasites Ross F. Waller1 and Geoffrey I. McFadden2,* way to apicoplast discovery with studies of extra- chromosomal DNAs recovered from isopycnic density 1Botany, University of British Columbia, 3529-6270 gradient fractionation of total Plasmodium DNA. This University Boulevard, Vancouver, BC, V6T 1Z4, Canada group recovered two DNA forms; one a 6kb tandemly 2Plant Cell Biology Research Centre, Botany, University repeated element that was later identifed as the of Melbourne, 3010, Australia mitochondrial genome, and a second, 35kb circle that was supposed to represent the DNA circles previously observed by microscopists (Wilson et al., 1996b; Wilson Abstract and Williamson, 1997). This molecule was also thought The apicoplast is a plastid organelle, homologous to to be mitochondrial DNA, and early sequence data of chloroplasts of plants, that is found in apicomplexan eubacterial-like rRNA genes supported this organellar parasites such as the causative agents of Malaria conclusion. However, as the sequencing effort continued Plasmodium spp. It occurs throughout the Apicomplexa a new conclusion, that was originally embraced with and is an ancient feature of this group acquired by the some awkwardness (“Have malaria parasites three process of endosymbiosis. Like plant chloroplasts, genomes?”, Wilson et al., 1991), began to emerge. apicoplasts are semi-autonomous with their own genome Gradually, evermore convincing character traits of a and expression machinery. In addition, apicoplasts import plastid genome were uncovered, and strong parallels numerous proteins encoded by nuclear genes. These with plastid genomes from non-photosynthetic plants nuclear genes largely derive from the endosymbiont (Epifagus virginiana) and algae (Astasia longa) became through a process of intracellular gene relocation. -
The Revised Classification of Eukaryotes
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/231610049 The Revised Classification of Eukaryotes Article in Journal of Eukaryotic Microbiology · September 2012 DOI: 10.1111/j.1550-7408.2012.00644.x · Source: PubMed CITATIONS READS 961 2,825 25 authors, including: Sina M Adl Alastair Simpson University of Saskatchewan Dalhousie University 118 PUBLICATIONS 8,522 CITATIONS 264 PUBLICATIONS 10,739 CITATIONS SEE PROFILE SEE PROFILE Christopher E Lane David Bass University of Rhode Island Natural History Museum, London 82 PUBLICATIONS 6,233 CITATIONS 464 PUBLICATIONS 7,765 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Biodiversity and ecology of soil taste amoeba View project Predator control of diversity View project All content following this page was uploaded by Smirnov Alexey on 25 October 2017. The user has requested enhancement of the downloaded file. The Journal of Published by the International Society of Eukaryotic Microbiology Protistologists J. Eukaryot. Microbiol., 59(5), 2012 pp. 429–493 © 2012 The Author(s) Journal of Eukaryotic Microbiology © 2012 International Society of Protistologists DOI: 10.1111/j.1550-7408.2012.00644.x The Revised Classification of Eukaryotes SINA M. ADL,a,b ALASTAIR G. B. SIMPSON,b CHRISTOPHER E. LANE,c JULIUS LUKESˇ,d DAVID BASS,e SAMUEL S. BOWSER,f MATTHEW W. BROWN,g FABIEN BURKI,h MICAH DUNTHORN,i VLADIMIR HAMPL,j AARON HEISS,b MONA HOPPENRATH,k ENRIQUE LARA,l LINE LE GALL,m DENIS H. LYNN,n,1 HILARY MCMANUS,o EDWARD A. D. -
Catálogo De Las Algas Y Cianoprocariotas Dulciacuícolas De Cuba
CATÁLOGO DE LAS ALGAS Y CIANOPROCARIOTAS DULCIACUÍCOLAS DE CUBA. EDITORIAL Augusto Comas González UNIVERSO o S U R CATÁLOGO DE LAS ALGAS Y CIANOPROCARIOTAS DULCIACUÍCOLAS DE CUBA. 1 2 CATÁLOGO DE LAS ALGAS Y CIANOPROCARIOTAS DULCIACUÍCOLAS DE CUBA. Augusto Comas González 3 Dirección Editorial: MSc. Alberto Valdés Guada Diseño: D.I. Roberto C. Berroa Cabrera Autor: Augusto Comas González Compilación y edición científica: Augusto Comas González © Reservados todos los derechos por lo que no se permite la reproduc- ción total o parcial de este libro. Editorial UNIVERSO SUR Universidad de Cienfuegos Carretera a Rodas, Km. 4. Cuatro Caminos Cienfuegos, CUBA © ISBN: 978-959-257-228-7 4 Indice INTRODUCCIÓN 7 CYANOPROKARYOTA 9 Clase Cyanophyceae 9 Orden Chroococcales Wettstein 1923 9 Orden Oscillatoriales Elenkin 1934 15 Orden Nostocales (Borzi) Geitler 1925 19 Orden Stigonematales Geitler 1925 22 Clase Chrysophyceae 23 Orden Chromulinales 23 Orden Ochromonadales 23 Orden Prymnesiales 24 Clase Xanthophyceae (= Tribophyceae) 24 Orden Mischococcales Pascher 1913 24 Orden Tribonematales Pascher 1939 25 Orden Botrydiales 26 Orden Vaucheriales 26 Clase Dinophyceae 26 Orden Peridiniales 26 Clase Cryptophyceae 27 Orden Cryptomonadales 27 Clase Rhodophyceae Ruprecht 1851 28 Orden Porphyridiales Kylin 1937 28 Orden Compsopogonales Skuja 1939 28 Orden Nemalionales Schmitz 1892 28 Orden Hildenbrandiales Pueschel & Cole 1982) 29 Orden Ceramiales 29 Clase Glaucocystophyceae Kies et Kremer 1989 29 Clase Euglenophyceae 29 Orden Euglenales 29 Clase Bacillariophyceae 34 Orden Centrales 34 Orden Pennales 35 Clase Prasinophyceae Chadefaud 1950 50 Orden Polyblepharidales Korš. 1938 50 Orden Tetraselmidales Ettl 1983 51 Clase Chlamydophyceae Ettl 1981 51 Orden Chlamydomonadales Frtisch in G.S. West 1927 51 5 Orden Volvocales Oltmanns 1904 52 Orden Chlorococcales Marchand 1895 Orth. -
The Classification of Lower Organisms
The Classification of Lower Organisms Ernst Hkinrich Haickei, in 1874 From Rolschc (1906). By permission of Macrae Smith Company. C f3 The Classification of LOWER ORGANISMS By HERBERT FAULKNER COPELAND \ PACIFIC ^.,^,kfi^..^ BOOKS PALO ALTO, CALIFORNIA Copyright 1956 by Herbert F. Copeland Library of Congress Catalog Card Number 56-7944 Published by PACIFIC BOOKS Palo Alto, California Printed and bound in the United States of America CONTENTS Chapter Page I. Introduction 1 II. An Essay on Nomenclature 6 III. Kingdom Mychota 12 Phylum Archezoa 17 Class 1. Schizophyta 18 Order 1. Schizosporea 18 Order 2. Actinomycetalea 24 Order 3. Caulobacterialea 25 Class 2. Myxoschizomycetes 27 Order 1. Myxobactralea 27 Order 2. Spirochaetalea 28 Class 3. Archiplastidea 29 Order 1. Rhodobacteria 31 Order 2. Sphaerotilalea 33 Order 3. Coccogonea 33 Order 4. Gloiophycea 33 IV. Kingdom Protoctista 37 V. Phylum Rhodophyta 40 Class 1. Bangialea 41 Order Bangiacea 41 Class 2. Heterocarpea 44 Order 1. Cryptospermea 47 Order 2. Sphaerococcoidea 47 Order 3. Gelidialea 49 Order 4. Furccllariea 50 Order 5. Coeloblastea 51 Order 6. Floridea 51 VI. Phylum Phaeophyta 53 Class 1. Heterokonta 55 Order 1. Ochromonadalea 57 Order 2. Silicoflagellata 61 Order 3. Vaucheriacea 63 Order 4. Choanoflagellata 67 Order 5. Hyphochytrialea 69 Class 2. Bacillariacea 69 Order 1. Disciformia 73 Order 2. Diatomea 74 Class 3. Oomycetes 76 Order 1. Saprolegnina 77 Order 2. Peronosporina 80 Order 3. Lagenidialea 81 Class 4. Melanophycea 82 Order 1 . Phaeozoosporea 86 Order 2. Sphacelarialea 86 Order 3. Dictyotea 86 Order 4. Sporochnoidea 87 V ly Chapter Page Orders. Cutlerialea 88 Order 6. -
Characterization and Phylogenetic Position of the Enigmatic Golden Alga Phaeothamnion Confervicola: Ultrastructure, Pigment Composition and Partial Ssu Rdna Sequence1
J. Phycol. 34, 286±298 (1998) CHARACTERIZATION AND PHYLOGENETIC POSITION OF THE ENIGMATIC GOLDEN ALGA PHAEOTHAMNION CONFERVICOLA: ULTRASTRUCTURE, PIGMENT COMPOSITION AND PARTIAL SSU RDNA SEQUENCE1 Robert A. Andersen,2 Dan Potter 3 Bigelow Laboratory for Ocean Sciences, West Boothbay Harbor, Maine 04575 Robert R. Bidigare, Mikel Latasa 4 Department of Oceanography, 1000 Pope Road, University of Hawaii at Manoa, Honolulu, Hawaii 96822 Kingsley Rowan School of Botany, University of Melbourne, Parkville, Victoria 3052, Australia and Charles J. O'Kelly Bigelow Laboratory for Ocean Sciences, West Boothbay Harbor, Maine 04575 ABSTRACT coxanthin, diadinoxanthin, diatoxanthin, heteroxanthin, The morphology, ultrastructure, photosynthetic pig- and b,b-carotene as well as chlorophylls a and c. The ments, and nuclear-encoded small subunit ribosomal DNA complete sequence of the SSU rDNA could not be obtained, (SSU rDNA) were examined for Phaeothamnion con- but a partial sequence (1201 bases) was determined. Par- fervicola Lagerheim strain SAG119.79. The morphology simony and neighbor-joining distance analyses of SSU rDNA from Phaeothamnion and 36 other chromophyte of the vegetative ®laments, as viewed under light micros- È copy, was indistinguishable from the isotype. Light micros- algae (with two Oomycete fungi as the outgroup) indicated copy, including epi¯uorescence microscopy, also revealed that Phaeothamnion was a weakly supported (bootstrap the presence of one to three chloroplasts in both vegetative 5,50%, 52%) sister taxon to the Xanthophyceae rep- cells and zoospores. Vegetative ®laments occasionally trans- resentatives and that this combined clade was in turn a formed to a palmelloid stage in old cultures. An eyespot weakly supported (bootstrap 5,50%, 67%) sister to the was not visible in zoospores when examined with light mi- Phaeophyceae. -
An Ultrastructural Study of Vegetative Cells of the Chromophyte
MORPHOLOGICAL & PHYLOGENETIC ANALYSIS OF TWO SPECIES OF HETEROKONT ALAGE Ian Misner A Thesis Submitted to the University of North Carolina at Wilmington in Partial Fulfillment Of the Requirements for the Degree of Master of Science Department of Biological Sciences University of North Carolina at Wilmington 2004 Approved by Advisory Committee _______________________________ ______________________________ Chair _______________________________ ______________________________ Accepted by ______________________________ Dean, Graduate School TABLE OF CONTENTS ABSTRACT ...................................................................................................................... iii ACKNOWLEDGMENTS ................................................................................................. v DEDICATION .................................................................................................................. vi LIST OF TABLES ............................................................................................................ vii LIST OF FIGURES ........................................................................................................... viii CHAPTER 1. PHYLOGENETIC POSITIONS OF THE COLORLESS, COLONIAL IRON-FLAGELLATE ANTHOPHYSA VEGETANS AND POLYKARYON PYRENOIDOSUM GEN. ET COMB. NOV. (HETEROKONTOPHYTA) .............. 1 Introduction ............................................................................................................ 1 Materials and Methods ........................................................................................... -
Evidence for Endosymbiotic Gene Transfer and the Early Evolution of Photosynthesis
Evolution of Glutamine Synthetase in Heterokonts: Evidence for Endosymbiotic Gene Transfer and the Early Evolution of Photosynthesis Deborah L. Robertson and Aure´lien Tartar Biology Department, Clark University Although the endosymbiotic evolution of chloroplasts through primary and secondary associations is well established, the evolutionary timing and stability of the secondary endosymbiotic events is less well resolved. Heterokonts include both photosynthetic and nonphotosynthetic members and the nonphotosynthetic lineages branch basally in phylogenetic reconstructions. Molecular and morphological data indicate that heterokont chloroplasts evolved via a secondary endo- symbiosis, involving a heterotrophic host cell and a photosynthetic ancestor of the red algae and this endosymbiotic event may have preceded the divergence of heterokonts and alveolates. If photosynthesis evolved early in this lineage, nuclear genomes of the nonphotosynthetic groups may contain genes that are not essential to photosynthesis but were derived from the endosymbiont genome through gene transfer. These genes offer the potential to trace the evolutionary history of chloroplast gains and losses within these lineages. Glutamine synthetase (GS) is essential for ammonium assimilation and glutamine biosynthesis in all organisms. Three paralogous gene families (GSI, GSII, and GSIII) have been identified and are broadly distributed among prokaryotic and eukaryotic lineages. In diatoms (Heterokonta), the nuclear-encoded chloroplast and cytosolic-localized GS isoforms are encoded by members of the GSII and GSIII family, respectively. Here, we explore the evolutionary history of GSII in both photosynthetic and nonphotosynthetic heterokonts, red algae, and other eukaryotes. GSII cDNA sequences were obtained from two species of oomycetes by polymerase chain reaction amplification. Additional GSII sequences from eukaryotes and bacteria were obtained from publicly available databases and genome projects.