Apicidin Sensitizes Pancreatic Cancer Cells to Gemcitabine by Epigenetically Regulating MUC4 Expression

Total Page:16

File Type:pdf, Size:1020Kb

Apicidin Sensitizes Pancreatic Cancer Cells to Gemcitabine by Epigenetically Regulating MUC4 Expression ANTICANCER RESEARCH 34: 5269-5276 (2014) Apicidin Sensitizes Pancreatic Cancer Cells to Gemcitabine by Epigenetically Regulating MUC4 Expression DANIEL ANSARI1, CARLOS UREY1, KATARZYNA SAID HILMERSSON1, MONIKA P. BAUDEN1, FREDRIK EK2, ROGER OLSSON2 and ROLAND ANDERSSON1 1Department of Surgery, Clinical Sciences Lund, Lund University, Skåne University Hospital, Lund, Sweden; 2Chemical Biology & Therapeutics, Department of Experimental Medical Science, Lund University, Lund, Sweden Abstract. Background/Aim: Mucin 4 (MUC4) has been also as the reference agent in most clinical trials. However, linked to resistance to gemcitabine in pancreatic cancer cells. the beneficial effect of gemcitabine on overall patient The aim of the present study was to assess whether epigenetic survival is limited due to high resistance of pancreatic cancer control of MUC4 expression can sensitize pancreatic cancer cells to the drug (6). cells to gemcitabine treatment. Materials and Methods: A 76- Mucins are high molecular-weight glycoproteins that are member combined epigenetics and phosphatase small- important in pancreatic tumorigenesis (7). Studies on mucin molecule inhibitor library was screened for anti-proliferative 4 (MUC4) have revealed that its expression is silenced in activity against the MUC4+ gemcitabine-resistant pancreatic normal pancreatic ducts (8, 9). MUC4 is up-regulated in the cancer cell line Capan-1, followed by high-content screening majority of pancreatic carcinomas, and is associated with of protein expression. Results: Apicidin, a histone deacetylase invasive proliferation of tumors and a poor outcome (10, 11). inhibitor, showed the greatest anti-proliferative activity with a On the basis of experimental studies, MUC4 has been lethal dose 50 (LD50) value of 5.17 μM. Apicidin significantly proposed as a factor that imparts resistance to pancreatic reduced the expression of MUC4 and its transcription factor cancer cells to gemcitabine (6, 12, 13). hepatocyte nuclear factor 4α. Combined treatment with a sub- The molecular mechanisms responsible for mucin gene therapeutic concentration of apicidin and gemcitabine activation in pancreatic cancer are slowly becoming known. synergistically inhibited growth of Capan-1 cells. Conclusion: Recent data indicate that mucin genes may be epigenetically- Apicidin appears to be a novel anti-proliferative agent against regulated in pancreatic cancer (14). An investigation of the pancreatic cancer cells that may reverse chemoresistance by detailed epigenetic mechanisms of MUC4 expression has epigenetically regulating MUC4 expression. shown that regulation of MUC4 expression involves both DNA methylation and histone H3 modification mediated by Pancreatic cancer ranks as the fourth leading cause of DNA methyltransferases and histone deacetylases (HDACs) cancer-related death (1). Effective treatment strategies are in pancreatic cancer cells (8). lacking. If no substantial breakthroughs occur within the next The aim of the present study was to assess whether years, pancreatic cancer is to become the second leading epigenetic control of MUC4 expression can sensitize cause of cancer-related death, preceded only by lung cancer pancreatic cancer cells to gemcitabine treatment. (2). Standard therapy for advanced pancreatic cancer consists of combinations of gemcitabine, a nucleoside analog (3). Materials and Methods Although there has been some advancement in the Cell culture. Human pancreatic cancer cell lines Capan-1 (MUC4+) development of other cytotoxic agents against pancreatic and Panc-1 (MUC4−) (ATCC®, Manassas, VA, USA) were maintained cancer (4, 5), gemcitabine is routinely used in the clinic and as a monolayer in Iscove’s modified Dulbecco’s medium (Gibco, Life Technologies, Grand Island, NY, USA) or in Dulbecco’s modified Eagle’s medium (Gibco) supplemented with 10% fetal bovine serum and 1% penicillin-streptomycin (100 U/ml), respectively. The cells Correspondence to: Roland Andersson, Department of Surgery, were grown in T-75 culture flasks (Sarstedt, Nümbrecht, Germany) Clinical Sciences Lund, Skåne University Hospital, Lund, Sweden. kept at 37˚C in 5% CO2 in an incubator. Culture media were changed Tel: +46 46172359, e-mail: [email protected] twice a week and the cells passaged before reaching confluence. Before experiments, the cells were washed with Dulbecco’s phosphate- Key Words: Apicidin, capan-1, epigenetics, histone deacetylase buffered saline without Ca2+ or Mg2+ (DPBS) (Gibco), detached using inhibitor, HNF4α, MUC4, pancreatic cancer, phosphatase inhibitor, TrypLe 10× (Gibco) for 5-15 min, harvested and pelleted at 300 ×g small-molecule inhibitor library, targeted treatment. for 3 min. After pellet dissociation by repeated gentle pipetting, cell 0250-7005/2014 $2.00+.40 5269 ANTICANCER RESEARCH 34: 5269-5276 (2014) Table I. The combined epigenetics and small-molecule phosphatase inhibitor library. Name Plate description Compound description 2,4-pyridinedicarboxylic acid Epigenetics library Histone demethylase inhibitor 5-aza-2'-deoxycytidine (Decitabine) Epigenetics library DNA methyltransferase inhibitor 9,10-Phenanthrenequinone Phosphatase inhibitor iibrary CD45 tyrosine phosphatase AGK2 Epigenetics library SIRT2 inhibitor Alendronate Phosphatase inhibitor iibrary Tyrosine phosphatases Alexidine·2HCl Phosphatase inhibitor iibrary PTPMT1 Aminoresveratrol sulfate Epigenetics library SIRT1 activator Anacardic acid Epigenetics library HAT inhibitor Apicidin Epigenetics library HDAC inhibitor B2 Epigenetics library SIRT2 inhibitor B4-Rhodanine Phosphatase inhibitor iibrary PRL3 Benzylphosphonic acid Phosphatase inhibitor iibrary Tyrosine phosphatases BIX-01294·3HCl Epigenetics library Histone methyl transferase inhibitor BML-210 Epigenetics library HDAC inhibitor BML-260 Phosphatase inhibitor iibrary JSP-1 BML-266 Epigenetics library SIRT2 inhibitor BML-267 Phosphatase inhibitor iibrary PTP1B BML-267 Ester Phosphatase inhibitor iibrary PTP1B (cell permeable) BML-278 Epigenetics library SIRT1 actvator BML-281 Epigenetics library HDAC-6 inhibitor BN-82002 Phosphatase inhibitor iibrary CDC25 Butyrolactone 3 Epigenetics library HAT inhibitor BVT-948 Phosphatase inhibitor iibrary Tyrosine phosphatases Cantharidic acid Phosphatase inhibitor iibrary PP1 and PP2A Cantharidin Phosphatase inhibitor iibrary PP1 and PP2A CI-994 Epigenetics library HDAC inhibitor CinnGel Phosphatase inhibitor iibrary PTP1B CTPB Epigenetics library HAT activator Cyclosporin A Phosphatase inhibitor iibrary Calcineurin (PP2B) Cypermethrin Phosphatase inhibitor iibrary Calcineurin (PP2B) Deltamethrin Phosphatase inhibitor iibrary Calcineurin (PP2B) Endothall Phosphatase inhibitor iibrary PP2A EX-527 Epigenetics library SIRT1 inhibitor Fenvalerate Phosphatase inhibitor iibrary Calcineurin (PP2B) Fluoro-SAHA Epigenetics library HDAC inhibitor Garcinol Epigenetics library HAT inhibitor Gossypol Phosphatase inhibitor iibrary Calcineurin (PP2B) Isonicotinamide Epigenetics library Nicotinamide antagonist ITSA-1 Epigenetics library Inhibitor of TSA activity L-p-Bromotetramisole oxalate Phosphatase inhibitor iibrary Tyrosine phosphatases Levamisole HCl Phosphatase inhibitor iibrary Mammalian alkaline phosphatase M-344 Epigenetics library HDAC inhibitor MC-1293 Epigenetics library HDAC inhibitor NCH-51 Epigenetics library HDAC inhibitor Nicotinamide Epigenetics library SIRT inhibitor NSC-3852 Epigenetics library HDAC inhibitor NSC-663284 Phosphatase inhibitor iibrary CDC25 NSC-95397 Phosphatase inhibitor iibrary CDC25 Nullscript Epigenetics library Scriptaid Neg control OBA Phosphatase inhibitor iibrary Tyrosine phosphatases OBA Ester Phosphatase inhibitor iibrary Tyrosine phosphatases (cell permeable) Oxamflatin Epigenetics library HDAC inhibitor Pentamidine Phosphatase inhibitor iibrary PRL1 Phenylbutyrate·Na Epigenetics library HDAC inhibitor Piceatannol Epigenetics library SIRT activator Resveratrol Epigenetics library SIRT1 activator RK-682 Phosphatase inhibitor iibrary Tyrosine phosphatases RWJ-60475 Phosphatase inhibitor iibrary CD45 tyrosine phosphatase Table I. continued 5270 Ansari et al: Apicidin Epigenetically Regulates MUC4 in Pancreatic Cancer Cells Table I. continued Name Plate description Compound description RWJ-60475 (AM)3 Phosphatase inhibitor iibrary CD45 tyrosine phosphatase (cell permeable) Salermide Epigenetics library SIRT inhibitor Sanguinarine chloride Phosphatase inhibitor iibrary PP2C Scriptaid Epigenetics library HDAC inhibitor Shikonin Phosphatase inhibitor iibrary Sirtinol Epigenetics library SIRT inhibitor Splitomicin Epigenetics library SIRT2 inhibitor Suberoyl bis-hydroxamic acid Epigenetics library HDAC inhibitor Suramin·6Na Epigenetics library SIRT1 inhibitor Tetramisole HCl Phosphatase inhibitor iibrary Mammalian alkaline phosphatase Tranylcypromine hemisulfate Epigenetics library Lysine demethylase inhibitor Triacetylresveratrol Epigenetics library SIRT1 activator Trichostatin A Epigenetics library HDAC inhibitor Tyrphostin 8 Phosphatase inhibitor iibrary Calcineurin (PP2B) Valproic acid Epigenetics library HDAC inhibitor Valproic acid hydroxamate Epigenetics library HDAC inhibitor Vorinostat (SAHA) Epigenetics library HDAC inhibitor Zebularine Epigenetics library DNA methyltransferase inhibitor CD45: Cluster of differentiation 45; CDC25: cell division cycle 25; HAT: histone acetyltransferase; HDAC: histone deacetylase; JSP-1: JNK stimulatory phosphatase 1; SIRT: sirtuin; PP1: protein phosphatase 1; PP2A: protein phosphatase 2A; PP2B: protein phosphatase 2B; PP2C: protein
Recommended publications
  • Upregulation of Peroxisome Proliferator-Activated Receptor-Α And
    Upregulation of peroxisome proliferator-activated receptor-α and the lipid metabolism pathway promotes carcinogenesis of ampullary cancer Chih-Yang Wang, Ying-Jui Chao, Yi-Ling Chen, Tzu-Wen Wang, Nam Nhut Phan, Hui-Ping Hsu, Yan-Shen Shan, Ming-Derg Lai 1 Supplementary Table 1. Demographics and clinical outcomes of five patients with ampullary cancer Time of Tumor Time to Age Differentia survival/ Sex Staging size Morphology Recurrence recurrence Condition (years) tion expired (cm) (months) (months) T2N0, 51 F 211 Polypoid Unknown No -- Survived 193 stage Ib T2N0, 2.41.5 58 F Mixed Good Yes 14 Expired 17 stage Ib 0.6 T3N0, 4.53.5 68 M Polypoid Good No -- Survived 162 stage IIA 1.2 T3N0, 66 M 110.8 Ulcerative Good Yes 64 Expired 227 stage IIA T3N0, 60 M 21.81 Mixed Moderate Yes 5.6 Expired 16.7 stage IIA 2 Supplementary Table 2. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis of an ampullary cancer microarray using the Database for Annotation, Visualization and Integrated Discovery (DAVID). This table contains only pathways with p values that ranged 0.0001~0.05. KEGG Pathway p value Genes Pentose and 1.50E-04 UGT1A6, CRYL1, UGT1A8, AKR1B1, UGT2B11, UGT2A3, glucuronate UGT2B10, UGT2B7, XYLB interconversions Drug metabolism 1.63E-04 CYP3A4, XDH, UGT1A6, CYP3A5, CES2, CYP3A7, UGT1A8, NAT2, UGT2B11, DPYD, UGT2A3, UGT2B10, UGT2B7 Maturity-onset 2.43E-04 HNF1A, HNF4A, SLC2A2, PKLR, NEUROD1, HNF4G, diabetes of the PDX1, NR5A2, NKX2-2 young Starch and sucrose 6.03E-04 GBA3, UGT1A6, G6PC, UGT1A8, ENPP3, MGAM, SI, metabolism
    [Show full text]
  • Propranolol-Mediated Attenuation of MMP-9 Excretion in Infants with Hemangiomas
    Supplementary Online Content Thaivalappil S, Bauman N, Saieg A, Movius E, Brown KJ, Preciado D. Propranolol-mediated attenuation of MMP-9 excretion in infants with hemangiomas. JAMA Otolaryngol Head Neck Surg. doi:10.1001/jamaoto.2013.4773 eTable. List of All of the Proteins Identified by Proteomics This supplementary material has been provided by the authors to give readers additional information about their work. © 2013 American Medical Association. All rights reserved. Downloaded From: https://jamanetwork.com/ on 10/01/2021 eTable. List of All of the Proteins Identified by Proteomics Protein Name Prop 12 mo/4 Pred 12 mo/4 Δ Prop to Pred mo mo Myeloperoxidase OS=Homo sapiens GN=MPO 26.00 143.00 ‐117.00 Lactotransferrin OS=Homo sapiens GN=LTF 114.00 205.50 ‐91.50 Matrix metalloproteinase‐9 OS=Homo sapiens GN=MMP9 5.00 36.00 ‐31.00 Neutrophil elastase OS=Homo sapiens GN=ELANE 24.00 48.00 ‐24.00 Bleomycin hydrolase OS=Homo sapiens GN=BLMH 3.00 25.00 ‐22.00 CAP7_HUMAN Azurocidin OS=Homo sapiens GN=AZU1 PE=1 SV=3 4.00 26.00 ‐22.00 S10A8_HUMAN Protein S100‐A8 OS=Homo sapiens GN=S100A8 PE=1 14.67 30.50 ‐15.83 SV=1 IL1F9_HUMAN Interleukin‐1 family member 9 OS=Homo sapiens 1.00 15.00 ‐14.00 GN=IL1F9 PE=1 SV=1 MUC5B_HUMAN Mucin‐5B OS=Homo sapiens GN=MUC5B PE=1 SV=3 2.00 14.00 ‐12.00 MUC4_HUMAN Mucin‐4 OS=Homo sapiens GN=MUC4 PE=1 SV=3 1.00 12.00 ‐11.00 HRG_HUMAN Histidine‐rich glycoprotein OS=Homo sapiens GN=HRG 1.00 12.00 ‐11.00 PE=1 SV=1 TKT_HUMAN Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3 17.00 28.00 ‐11.00 CATG_HUMAN Cathepsin G OS=Homo
    [Show full text]
  • Tnfa-Induced Mucin 4 Expression Elicits Trastuzumab Resistance in HER2-Positive Breast Cancer María F
    Published OnlineFirst October 3, 2016; DOI: 10.1158/1078-0432.CCR-16-0970 Cancer Therapy: Clinical Clinical Cancer Research TNFa-Induced Mucin 4 Expression Elicits Trastuzumab Resistance in HER2-Positive Breast Cancer María F. Mercogliano1, Mara De Martino1, Leandro Venturutti1, Martín A. Rivas2, Cecilia J. Proietti1, Gloria Inurrigarro3, Isabel Frahm3, Daniel H. Allemand4, Ernesto Gil Deza5, Sandra Ares5, Felipe G. Gercovich5, Pablo Guzman 6, Juan C. Roa6,7, Patricia V. Elizalde1, and Roxana Schillaci1 Abstract Purpose: Although trastuzumab administration improved the Results: TNFa overexpression turned trastuzumab-sensitive outcome of HER2-positive breast cancer patients, resistance cells and tumors into resistant ones. Histopathologic findings events hamper its clinical benefits. We demonstrated that TNFa revealed mucin foci in TNFa-producing tumors. TNFa induced stimulation in vitro induces trastuzumab resistance in HER2- upregulation of MUC4 that reduced trastuzumab binding to its positive breast cancer cell lines. Here, we explored the mechanism epitope and impaired ADCC. Silencing MUC4 enhanced trastu- of TNFa-induced trastuzumab resistance and the therapeutic zumab binding, increased ADCC, and overcame trastuzumab and strategies to overcome it. trastuzumab-emtansine antiproliferative effects in TNFa-overex- Experimental Design: Trastuzumab-sensitive breast cancer pressing cells. Accordingly, administration of TNFa-blocking cells, genetically engineered to stably overexpress TNFa,and antibodies downregulated MUC4 and sensitized de novo trastu- de novo trastuzumab-resistant tumors, were used to evaluate zumab-resistant breast cancer cells and tumors to trastuzumab. In trastuzumab response and TNFa-blocking antibodies effective- HER2-positive breast cancer samples, MUC4 expression was ness respectively. Immunohistochemistry and antibody-depen- found to be an independent predictor of poor disease-free survival dent cell cytotoxicity (ADCC), together with siRNA strategy, (P ¼ 0.008).
    [Show full text]
  • A Stealth Cloak for Cancer Cells
    BMB Rep. 2021; 54(7): 344-355 BMB www.bmbreports.org Reports Invited Mini Review Mucin in cancer: a stealth cloak for cancer cells Dong-Han Wi1, Jong-Ho Cha2,3 & Youn-Sang Jung1,* 1Department of Life Science, Chung-Ang University, Seoul, 06974, 2Department of Biomedical Sciences, College of Medicine, Inha University, Incheon 22212, 3Department of Biomedical Science, Program in Biomedical Science and Engineering, Graduate school, Inha University, Incheon 22212, Korea Mucins are high molecular-weight epithelial glycoproteins and mucinous colorectal carcinoma (MCC) (3). Since tumor growth are implicated in many physiological processes, including epit- sites induce inhospitable conditions for them to survive, helial cell protection, signaling transduction, and tissue home- mucins are suggested as an oncogenic microenvironment that ostasis. Abnormality of mucus expression and structure contri- avoids hypoxia, acidic, and other biological hurdles. The com- butes to biological properties related to human cancer progress- position and structure of mucins enable them to mimic the ion. Tumor growth sites induce inhospitable conditions. Many surface of tumor cells like the surface of normal epithelial cells kinds of research suggest that mucins provide a microenviron- (4). Additionally, the mucus layer captures growth factors or ment to avoid hypoxia, acidic, and other biological conditions cytokines, contributing to cell growth of the tumor. Alter- that promote cancer progression. Given that the mucus layer natively, these properties interfere with the interaction bet- captures growth factors or cytokines, we propose that mucin ween the immune system and tumor cells. Indeed, a high helps to ameliorate inhospitable conditions in tumor-growing concentration of soluble mucins downregulates the motility sites.
    [Show full text]
  • Digitalcommons@UNMC Regulation of the Transmembrane Mucin MUC4
    University of Nebraska Medical Center DigitalCommons@UNMC Theses & Dissertations Graduate Studies Fall 12-18-2015 Regulation of the transmembrane mucin MUC4 by Wnt/β-catenin in gastrointestinal cancers Priya Pai University of Nebraska Medical Center Follow this and additional works at: https://digitalcommons.unmc.edu/etd Part of the Biochemistry Commons, and the Molecular Biology Commons Recommended Citation Pai, Priya, "Regulation of the transmembrane mucin MUC4 by Wnt/β-catenin in gastrointestinal cancers" (2015). Theses & Dissertations. 58. https://digitalcommons.unmc.edu/etd/58 This Dissertation is brought to you for free and open access by the Graduate Studies at DigitalCommons@UNMC. It has been accepted for inclusion in Theses & Dissertations by an authorized administrator of DigitalCommons@UNMC. For more information, please contact [email protected]. i Regulation of the transmembrane mucin MUC4 by Wnt/β- catenin in gastrointestinal cancers By PRIYA PAI A DISSERTATION Presented to the Faculty of The University of Nebraska Graduate College In Partial Fulfillment of the Requirements For the Degree of Doctor of Philosophy Department of Biochemistry and Molecular Biology Graduate Program Under the Supervision of Professor Surinder K. Batra University of Nebraska Medical Center Omaha, Nebraska November, 2015 ii Regulation of the transmembrane mucin MUC4 by Wnt/β-catenin in gastrointestinal cancers Priya Pai, PhD. University of Nebraska Medical Center, 2015 Supervisor: Surinder K. Batra, PhD. The transmembrane mucin MUC4 is a high molecular weight glycoprotein that is expressed de novo in pancreatic ductal adenocarcinoma (PDAC). MUC4 has been shown to play a tumor-promoting role in malignancies such as PDAC, ovarian cancer and breast cancer.
    [Show full text]
  • And HPV18-Infected Early Stage Cervical Cancers and Normal
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Virology 331 (2005) 269–291 www.elsevier.com/locate/yviro Gene expression profiles of primary HPV16- and HPV18-infected early stage cervical cancers and normal cervical epithelium: identification of novel candidate molecular markers for cervical cancer diagnosis and therapy Alessandro D. Santina,*, Fenghuang Zhanb, Eliana Bignottia, Eric R. Siegelc, Stefania Cane´ a, Stefania Bellonea, Michela Palmieria, Simone Anfossia, Maria Thomasd, Alexander Burnetta, Helen H. Kaye, Juan J. Romana, Timothy J. O’Briena, Erming Tianb, Martin J. Cannonf, John Shaughnessy Jr.b, Sergio Pecorellig aDivision of Gynecologic Oncology, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA bMyeloma Institute for Research and Therapy, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA cDepartment of Biostatistics, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA dDepartment of Pathology, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA eDepartment of Obstetrics and Gynecology, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA fDepartment of Microbiology and Immunology, University of Arkansas, Little Rock, AR 72205, USA gDivision of Gynecologic Oncology, University of Brescia, Brescia, Italy Received 2 July 2004; returned to author for revision 18 August 2004; accepted 9 September 2004 Available online 21 November 2004 Abstract With the goal of identifying genes with a differential pattern of expression between invasive cervical carcinomas (CVX) and normal cervical keratinocytes (NCK), we used oligonucleotide microarrays to interrogate the expression of 14,500 known genes in 11 primary HPV16 and HPV18-infected stage IB–IIA cervical cancers and four primary normal cervical keratinocyte cultures.
    [Show full text]
  • Supplementary Table S4. FGA Co-Expressed Gene List in LUAD
    Supplementary Table S4. FGA co-expressed gene list in LUAD tumors Symbol R Locus Description FGG 0.919 4q28 fibrinogen gamma chain FGL1 0.635 8p22 fibrinogen-like 1 SLC7A2 0.536 8p22 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 DUSP4 0.521 8p12-p11 dual specificity phosphatase 4 HAL 0.51 12q22-q24.1histidine ammonia-lyase PDE4D 0.499 5q12 phosphodiesterase 4D, cAMP-specific FURIN 0.497 15q26.1 furin (paired basic amino acid cleaving enzyme) CPS1 0.49 2q35 carbamoyl-phosphate synthase 1, mitochondrial TESC 0.478 12q24.22 tescalcin INHA 0.465 2q35 inhibin, alpha S100P 0.461 4p16 S100 calcium binding protein P VPS37A 0.447 8p22 vacuolar protein sorting 37 homolog A (S. cerevisiae) SLC16A14 0.447 2q36.3 solute carrier family 16, member 14 PPARGC1A 0.443 4p15.1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha SIK1 0.435 21q22.3 salt-inducible kinase 1 IRS2 0.434 13q34 insulin receptor substrate 2 RND1 0.433 12q12 Rho family GTPase 1 HGD 0.433 3q13.33 homogentisate 1,2-dioxygenase PTP4A1 0.432 6q12 protein tyrosine phosphatase type IVA, member 1 C8orf4 0.428 8p11.2 chromosome 8 open reading frame 4 DDC 0.427 7p12.2 dopa decarboxylase (aromatic L-amino acid decarboxylase) TACC2 0.427 10q26 transforming, acidic coiled-coil containing protein 2 MUC13 0.422 3q21.2 mucin 13, cell surface associated C5 0.412 9q33-q34 complement component 5 NR4A2 0.412 2q22-q23 nuclear receptor subfamily 4, group A, member 2 EYS 0.411 6q12 eyes shut homolog (Drosophila) GPX2 0.406 14q24.1 glutathione peroxidase
    [Show full text]
  • 2011/058582 Al O
    (12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (10) International Publication Number (43) International Publication Date i 1 m 19 May 2011 (19.05.2011) 2011/058582 Al (51) International Patent Classification: Road, Sholinganallur, Chennai 600 119 (IN). CHEN- C07C 259/06 (2006.01) A61P 31/00 (2006.01) NIAPPAN, Vinoth Kumar [IN/IN]; Orchid Research C07D 277/46 (2006.01) A61K 31/426 (2006.01) Laboratories Ltd., R & D Centre: Plot No: 476/14, Old C07D 277/48 (2006.01) A61K 31/55 (2006.01) Mahabalipuram Road, Sholinganallur, Chennai 600 119 C07D 487/08 (2006.01) (IN). GANESAN, Karthikeyan [IN/IN]; Orchid Re search Laboratories Ltd., R & D Centre: Plot No: 476/14, (21) International Application Number: Old Mahabalipuram Road, Sholinganallur, Chennai 600 PCT/IN20 10/000738 119 (IN). NARAYANAN, Shridhar [IN/IN]; Orchid Re (22) International Filing Date: search Laboratories Ltd., R & D Centre: Plot No: 476/14, 12 November 2010 (12.1 1.2010) Old Mahabalipuram Road, Sholinganallur, Chennai 600 119 (IN). (25) Filing Language: English (74) Agent: UDAYAMPALAYAM PALANISAMY, (26) Publication Language: English Senthilkumar; Orchid Chemicals & Pharmaceuticals (30) Priority Data: LTD., R & D Centre: Plot No: 476/14, Old Mahabalipu 2810/CHE/2009 16 November 2009 (16. 11.2009) IN ram Road, Sholinganallur, Chennai 600 119 (IN). (71) Applicant (for all designated States except US): OR¬ (81) Designated States (unless otherwise indicated, for every CHID RESEARCH LABORATORIES LTD. [IN/IN]; kind of national protection available): AE, AG, AL, AM, Orchid Towers, 313, Valluvar Kottam High Road, AO, AT, AU, AZ, BA, BB, BG, BH, BR, BW, BY, BZ, Nungambakkam, Chennai 600 034 (IN).
    [Show full text]
  • Serial Analysis of Gene Expression in Normal P53 Null Mammary Epithelium
    Oncogene (2002) 21, 6366 – 6376 ª 2002 Nature Publishing Group All rights reserved 0950 – 9232/02 $25.00 www.nature.com/onc Serial analysis of gene expression in normal p53 null mammary epithelium C Marcelo Aldaz*,1, Yuhui Hu1, Rachael Daniel1, Sally Gaddis1, Frances Kittrell2 and Daniel Medina2 1The University of Texas M.D. Anderson Cancer Center, Department of Carcinogenesis, Smithville, Texas, TX 78957, USA; 2Baylor College of Medicine Department of Molecular and Cellular Biology, Houston, Texas, TX 77030, USA Much evidence has accumulated implicating the p53 gene function although activating mutations were also as of importance in breast carcinogenesis. However, observed. Usually p53 abnormalities associate with much still remains to be uncovered on the specific poorer clinical outcome. This, likely, is the consequence downstream pathways influenced by this important of the known critical roles of p53 in regulating the cell activator/repressor of transcription. This study investi- cycle, apoptosis, DNA repair and maintaining genome gated the effects of a p53 null genotype on the stability (Levine, 1997). The loss of wild type p53 transcriptome of ‘normal’ mouse mammary epithelium function is clearly an important event in breast using a unique in vivo model of preneoplastic transforma- tumorigenesis as documented both in human and murine tion. We used SAGE for the comparative analysis of p53 systems (Donehower et al., 1995; Elledge and Allred, wild type (wt) and null mammary epithelium unexposed 1994). However, the exact mechanisms by which such and exposed to hormonal stimulation. Analysis of the lack of normal gene function leads to cancer formation hormone exposed samples provided a comprehensive view and progression are only beginning to be understood.
    [Show full text]
  • Proteomic Analysis of Cancer and Mesothelial Cells Reveals an Increase in Mucin 5AC During Ovarian Cancer and Peritoneal Interaction
    JOURNAL OF PROTEOMICS 103 (2014) 204– 215 Available online at www.sciencedirect.com ScienceDirect www.elsevier.com/locate/jprot Proteomic analysis of cancer and mesothelial cells reveals an increase in Mucin 5AC during ovarian cancer and peritoneal interaction Natasha Musrapa,b, George S. Karagiannisa,b, Punit Saraona,b, Ihor Batruchb, Chris Smithc, Eleftherios P. Diamandisa,b,c,⁎ aDepartment of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, Ontario, Canada bDepartment of Pathology and Laboratory Medicine, Mount Sinai Hospital, Toronto, Ontario, Canada cDepartment of Clinical Biochemistry, University Health Network, Toronto, Ontario, Canada ARTICLE INFO ABSTRACT Article history: Ovarian cancer is a highly metastatic disease that is often characterized by widespread Received 4 December 2013 abdominal dissemination. A hallmark of ovarian cancer progression is the attachment of Accepted 27 March 2014 malignant cells to the mesothelium and the formation of invasive peritoneal implants. Available online 12 April 2014 Therefore, delineating factors involved in cancer-peritoneal cell interaction is critical to improving patient survival, as it may lead to the discovery of novel therapeutic targets. As Keywords: such, we aimed to identify proteins that participate in this interaction by comparing the Ovarian cancer secreted proteome of a co-culture model containing ovarian cancer (OVCAR-5) and mesothelial Proteomics cells (LP-9), to their respective monoculture secretomes. In total, 49 proteins were differentially Co-culture secreted during cancer and mesothelial cell contact. Relative mRNA expression of candidates Peritoneum was performed, which revealed a significant increase in MUC5AC gene expression in cancer Metastasis cells cultured in three different co-culture models (OVCAR-5 and LP-9; BG-1 and LP-9; OV-90 and Mucin 5AC LP-9).
    [Show full text]
  • Microspore Embryogenesis: Targeting the Determinant Factors of Stress- Induced Cell Reprogramming for Crop Improvement
    1 2 3 4 Microspore embryogenesis: targeting the determinant factors of stress- 5 induced cell reprogramming for crop improvement 6 7 8 Pilar S. Testillano 9 10 Pollen Biotechnolgy of Crop Plants group. Biological Research Center, CIB-CSIC. 11 Ramiro de Maeztu 9, 28040 Madrid. Spain 12 E-mail: [email protected] 13 Phone: +34-918373112 (Ext: 4366) 14 15 Date of submission: October 31, 2018 16 Number of figures: 5. 17 Word count: 6312. 18 19 Running title: 20 Determinant factors of stress-induced microspore embryogenesis in crops 1 21 ABSTRACT 22 23 Under stress, isolated microspores are reprogrammed in vitro towards embryogenesis, 24 producing doubled haploid plants, useful biotechnological tools in plant breeding as a 25 source of new genetic variability, fixed in homozygous plants in only one generation. 26 Stress-induced cell death and low rates of cell reprogramming are major factors that 27 reduce the process yield. Knowledge gained in recent years has revealed that 28 microspore embryogenesis initiation and progression involve a complex network of 29 factors, whose roles are not yet well understood. Autophagy and cell-death proteases are 30 crucial players in the response to stress, while cell reprogramming and totipotency 31 acquisition are regulated by hormonal and epigenetic mechanisms. Auxin biosynthesis, 32 transport and action are required for microspore embryogenesis. Initial stages involve 33 DNA hypomethylation, H3K9 demethylation, and H3/H4 acetylation. Cell wall 34 remodelling, with pectin de-methylesterification and AGP expression, is necessary for 35 embryo development. We will review recent findings regarding the determinant factors 36 underlying stress-induced microspore embryogenesis, focusing on the role of 37 autophagy, cell death, auxin, chromatin modifications, and cell wall.
    [Show full text]
  • Epigenetic Malleability at Core Promoter Regulates Tobacco PR-1A
    bioRxiv preprint doi: https://doi.org/10.1101/2021.07.24.453639; this version posted July 25, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Research article: 2 Epigenetic Malleability at Core Promoter Regulates Tobacco PR-1a 3 Expression after Salicylic Acid Treatment 4 5 Authors: Niraj Lodhi1*, Mala Singh1, Rakesh Srivastava1, Samir V. Sawant1, and Rakesh 6 Tuli1,3 7 8 1. National Botanical Research Institute, Council of Scientific and Industrial Research, Rana 9 Pratap Marg, Lucknow-226001, India 10 2. Present address: University Institute of Engineering & Technology (UIET), Sector 25, 11 Panjab University, Chandigarh 160014, India 12 13 14 *Corresponding Author: 15 Niraj Lodhi, Ph.D. 16 Lead, Clinical Research (Research and Development Division) 17 Genesis DiaGnostics 18 LanGhorne, PA 19047 19 Ph: 267-212-2000 Ext. 156 20 Fax: 267-212-2005 21 E-mail: [email protected] 22 23 24 25 SUMMARY 26 Histone methylation and acetylation regulation of tobacco PR-1a promoter are significant for 27 disassembly of the nucleosome and repressor proteins during induction. 28 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.07.24.453639; this version posted July 25, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 29 ABSTRACT 30 • Tobacco’s PR-1a gene is induced by pathogen attack or exogenous application of 31 Salicylic Acid (SA). However, the epigenetic modifications of the most important 32 inducible promoter of the PR-1a gene are not understood clearly.
    [Show full text]