What Makes Plants Grow?
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Biogeography, Community Structure and Biological Habitat Types of Subtidal Reefs on the South Island West Coast, New Zealand
Biogeography, community structure and biological habitat types of subtidal reefs on the South Island West Coast, New Zealand SCIENCE FOR CONSERVATION 281 Biogeography, community structure and biological habitat types of subtidal reefs on the South Island West Coast, New Zealand Nick T. Shears SCIENCE FOR CONSERVATION 281 Published by Science & Technical Publishing Department of Conservation PO Box 10420, The Terrace Wellington 6143, New Zealand Cover: Shallow mixed turfing algal assemblage near Moeraki River, South Westland (2 m depth). Dominant species include Plocamium spp. (yellow-red), Echinothamnium sp. (dark brown), Lophurella hookeriana (green), and Glossophora kunthii (top right). Photo: N.T. Shears Science for Conservation is a scientific monograph series presenting research funded by New Zealand Department of Conservation (DOC). Manuscripts are internally and externally peer-reviewed; resulting publications are considered part of the formal international scientific literature. Individual copies are printed, and are also available from the departmental website in pdf form. Titles are listed in our catalogue on the website, refer www.doc.govt.nz under Publications, then Science & technical. © Copyright December 2007, New Zealand Department of Conservation ISSN 1173–2946 (hardcopy) ISSN 1177–9241 (web PDF) ISBN 978–0–478–14354–6 (hardcopy) ISBN 978–0–478–14355–3 (web PDF) This report was prepared for publication by Science & Technical Publishing; editing and layout by Lynette Clelland. Publication was approved by the Chief Scientist (Research, Development & Improvement Division), Department of Conservation, Wellington, New Zealand. In the interest of forest conservation, we support paperless electronic publishing. When printing, recycled paper is used wherever possible. CONTENTS Abstract 5 1. Introduction 6 2. -
7.014 Handout PRODUCTIVITY: the “METABOLISM” of ECOSYSTEMS
7.014 Handout PRODUCTIVITY: THE “METABOLISM” OF ECOSYSTEMS Ecologists use the term “productivity” to refer to the process through which an assemblage of organisms (e.g. a trophic level or ecosystem assimilates carbon. Primary producers (autotrophs) do this through photosynthesis; Secondary producers (heterotrophs) do it through the assimilation of the organic carbon in their food. Remember that all organic carbon in the food web is ultimately derived from primary production. DEFINITIONS Primary Productivity: Rate of conversion of CO2 to organic carbon (photosynthesis) per unit surface area of the earth, expressed either in terns of weight of carbon, or the equivalent calories e.g., g C m-2 year-1 Kcal m-2 year-1 Primary Production: Same as primary productivity, but usually expressed for a whole ecosystem e.g., tons year-1 for a lake, cornfield, forest, etc. NET vs. GROSS: For plants: Some of the organic carbon generated in plants through photosynthesis (using solar energy) is oxidized back to CO2 (releasing energy) through the respiration of the plants – RA. Gross Primary Production: (GPP) = Total amount of CO2 reduced to organic carbon by the plants per unit time Autotrophic Respiration: (RA) = Total amount of organic carbon that is respired (oxidized to CO2) by plants per unit time Net Primary Production (NPP) = GPP – RA The amount of organic carbon produced by plants that is not consumed by their own respiration. It is the increase in the plant biomass in the absence of herbivores. For an entire ecosystem: Some of the NPP of the plants is consumed (and respired) by herbivores and decomposers and oxidized back to CO2 (RH). -
Thermophilic Lithotrophy and Phototrophy in an Intertidal, Iron-Rich, Geothermal Spring 2 3 Lewis M
bioRxiv preprint doi: https://doi.org/10.1101/428698; this version posted September 27, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Thermophilic Lithotrophy and Phototrophy in an Intertidal, Iron-rich, Geothermal Spring 2 3 Lewis M. Ward1,2,3*, Airi Idei4, Mayuko Nakagawa2,5, Yuichiro Ueno2,5,6, Woodward W. 4 Fischer3, Shawn E. McGlynn2* 5 6 1. Department of Earth and Planetary Sciences, Harvard University, Cambridge, MA 02138 USA 7 2. Earth-Life Science Institute, Tokyo Institute of Technology, Meguro, Tokyo, 152-8550, Japan 8 3. Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 9 91125 USA 10 4. Department of Biological Sciences, Tokyo Metropolitan University, Hachioji, Tokyo 192-0397, 11 Japan 12 5. Department of Earth and Planetary Sciences, Tokyo Institute of Technology, Meguro, Tokyo, 13 152-8551, Japan 14 6. Department of Subsurface Geobiological Analysis and Research, Japan Agency for Marine-Earth 15 Science and Technology, Natsushima-cho, Yokosuka 237-0061, Japan 16 Correspondence: [email protected] or [email protected] 17 18 Abstract 19 Hydrothermal systems, including terrestrial hot springs, contain diverse and systematic 20 arrays of geochemical conditions that vary over short spatial scales due to progressive interaction 21 between the reducing hydrothermal fluids, the oxygenated atmosphere, and in some cases 22 seawater. At Jinata Onsen, on Shikinejima Island, Japan, an intertidal, anoxic, iron- and 23 hydrogen-rich hot spring mixes with the oxygenated atmosphere and sulfate-rich seawater over 24 short spatial scales, creating an enormous range of redox environments over a distance ~10 m. -
Community Ecology
Schueller 509: Lecture 12 Community ecology 1. The birds of Guam – e.g. of community interactions 2. What is a community? 3. What can we measure about whole communities? An ecology mystery story If birds on Guam are declining due to… • hunting, then bird populations will be larger on military land where hunting is strictly prohibited. • habitat loss, then the amount of land cleared should be negatively correlated with bird numbers. • competition with introduced black drongo birds, then….prediction? • ……. come up with a different hypothesis and matching prediction! $3 million/yr Why not profitable hunting instead? (Worked for the passenger pigeon: “It was the demographic nightmare of overkill and impaired reproduction. If you’re killing a species far faster than they can reproduce, the end is a mathematical certainty.” http://www.audubon.org/magazine/may-june- 2014/why-passenger-pigeon-went-extinct) Community-wide effects of loss of birds Schueller 509: Lecture 12 Community ecology 1. The birds of Guam – e.g. of community interactions 2. What is a community? 3. What can we measure about whole communities? What is an ecological community? Community Ecology • Collection of populations of different species that occupy a given area. What is a community? e.g. Microbial community of one human “YOUR SKIN HARBORS whole swarming civilizations. Your lips are a zoo teeming with well- fed creatures. In your mouth lives a microbiome so dense —that if you decided to name one organism every second (You’re Barbara, You’re Bob, You’re Brenda), you’d likely need fifty lifetimes to name them all. -
Islands in the Stream 2002: Exploring Underwater Oases
Islands in the Stream 2002: Exploring Underwater Oases NOAA: Office of Ocean Exploration Mission Three: SUMMARY Discovery of New Resources with Pharmaceutical Potential (Pharmaceutical Discovery) Exploration of Vision and Bioluminescence in Deep-sea Benthos (Vision and Bioluminescence) Microscopic view of a Pachastrellidae sponge (front) and an example of benthic bioluminescence (back). August 16 - August 31, 2002 Shirley Pomponi, Co-Chief Scientist Tammy Frank, Co-Chief Scientist John Reed, Co-Chief Scientist Edie Widder, Co-Chief Scientist Pharmaceutical Discovery Vision and Bioluminescence Harbor Branch Oceanographic Institution Harbor Branch Oceanographic Institution ABSTRACT Harbor Branch Oceanographic Institution (HBOI) scientists continued their cutting-edge exploration searching for untapped sources of new drugs, examining the visual physiology of deep-sea benthos and characterizing the habitat in the South Atlantic Bight aboard the R/V Seaward Johnson from August 16-31, 2002. Over a half-dozen new species of sponges were recorded, which may provide scientists with information leading to the development of compounds used to study, treat, or diagnose human diseases. In addition, wondrous examples of bioluminescence and emission spectra were recorded, providing scientists with more data to help them understand how benthic organisms visualize their environment. New and creative Table of Contents ways to outreach and educate the public also Key Findings and Outcomes................................2 Rationale and Objectives ....................................4 -
Interactions Between Organisms . and Environment
INTERACTIONS BETWEEN ORGANISMS . AND ENVIRONMENT 2·1 FUNCTIONAL RELATIONSHIPS An understanding of the relationships between an organism and its environment can be attained only when the environmental factors that can be experienced by the organism are considered. This is difficult because it is first necessary for the ecologist to have some knowledge of the neurological and physiological detection abilities of the organism. Sound, for example, should be measured with an instrument that responds to sound energy in the same way that the organism being studied does. Snow depths should be measured in a manner that reflects their effect on the animal. If six inches of snow has no more effect on an animal than three inches, a distinction between the two depths is meaningless. Six inches is not twice three inches in terms of its effect on the animal! Lower animals differ from man in their response to environmental stimuli. Color vision, for example, is characteristic of man, monkeys, apes, most birds, some domesticated animals, squirrels, and, undoubtedly, others. Deer and other wild ungulates probably detect only shades of grey. Until definite data are ob tained on the nature of color vision in an animal, any measurement based on color distinctions could be misleading. Infrared energy given off by any object warmer than absolute zero (-273°C) is detected by thermal receptors on some animals. Ticks are sensitive to infrared radiation, and pit vipers detect warm prey with thermal receptors located on the anterior dorsal portion of the skull. Man can detect different levels of infrared radiation with receptors on the skin, but they are not directional nor are they as sensitive as those of ticks and vipers. -
Interactions Between Photosynthesis and Respiration in an Aquatic Ecosystem
Interactions between Photosynthesis and Respiration in an Aquatic Ecosystem Jane E. Caldwell and Kristi Teagarden 53 Campus Drive, P.O. Box 6057 Dept. of Biology West Virginia University Morgantown, WV 26506 [email protected] (304)293-5201 extension 31459 [email protected] (304)293-5201 extension 31542 Abstract: Students measure the results of respiration and photosynthesis separately, combined, and in comparison to a non-living control “ecosystem”. The living ecosystem uses only snails and water plants. Oxygen, carbon dioxide, and ammonia nitrogen concentrations are measured with simple colorimetric and titration water tests using commercially available kits. The exercise is designed for large enrollment non-majors labs, but modifications for large and small classrooms are described. Introduction This lab exercise was developed for a freshman course for non-science majors at West Virginia University. The exercise asks students to apply their knowledge of basic metabolic processes to a series of simple aquatic ecosystems, which students monitor through water testing. These ecosystems consist of aquaria containing plants and/or snails with or without light exposure, and are compared against a non-living control system (an aquarium with water, light, and gravel). As they analyze their results, students observe the interplay of respiration, photosynthesis, protein digestion (or waste excretion), and decomposition through their effects on dissolved oxygen, carbon dioxide, and ammonia. Students synthesize these observations into written explanations of their results. During the course of the lab, students: • predict the relative levels of oxygen, carbon dioxide, and ammonia for various aquaria compared to a control aquarium. • observe and conduct titrimetric and colorimetric tests for dissolved compounds in water. -
Photosynthesis and Respiration
HIGH SCHOOL LIFE SCIENCE: PHOTOSYNTHESIS AND RESPIRATION Standards Bundle Standards are listed within the bundle. Bundles are created with potential instructional use in mind, based upon potential for related phenomena that can be used throughout a unit. HS-LS1-5 Use a model to illustrate how photosynthesis transforms light energy into stored chemical energy. (SEP: 2; DCI: LS1.C; CCC: Systems, Energy/Matter) [Clarification Statement: Emphasis is on illustrating inputs and outputs of matter and the transfer and transformation of energy in photosynthesis by plants and other photosynthesizing organisms. Examples of models could include diagrams, chemical equations, and conceptual models.] [Assessment Boundary: Assessment does not include specific biochemical steps.] HS-LS1-7 Use a model of the major inputs and outputs of cellular respiration (aerobic and anaerobic) to exemplify the chemical process in which the bonds of food molecules are broken, the bonds of new compounds are formed, and a net transfer of energy results. (SEP: 2; DCI: LS1.C; CCC: Energy/Matter)[Clarification Statement: Emphasis is on the conceptual understanding of the inputs and outputs of the process of cellular respiration.] [Assessment Boundary: Assessment should not include identification of the steps or specific processes involved in cellular respiration.] HS-LS2-5 Develop a model to illustrate the role of photosynthesis and cellular respiration in the cycling of carbon among the biosphere, atmosphere, hydrosphere, and geosphere. (SEP: 2; DCI: LS2.B, PS3.D; CCC: Systems) [Clarification Statement: Examples of models could include simulations and mathematical models.] [Assessment Boundary: Assessment does not include the specific chemical steps of photosynthesis and respiration.] Content Overview This section provides a generic overview of the content or disciplinary core ideas as an entry point to the standards. -
Habitat Evaluation: Guidance for the Review of Environmental Impact Assessment Documents
HABITAT EVALUATION: GUIDANCE FOR THE REVIEW OF ENVIRONMENTAL IMPACT ASSESSMENT DOCUMENTS EPA Contract No. 68-C0-0070 work Assignments B-21, 1-12 January 1993 Submitted to: Jim Serfis U.S. Environmental Protection Agency Office of Federal Activities 401 M Street, SW Washington, DC 20460 Submitted by: Mark Southerland Dynamac Corporation The Dynamac Building 2275 Research Boulevard Rockville, MD 20850 CONTENTS Page INTRODUCTION ... ...... .... ... ................................................. 1 Habitat Conservation .......................................... 2 Habitat Evaluation Methodology ................................... 2 Habitats of Concern ........................................... 3 Definition of Habitat ..................................... 4 General Habitat Types .................................... 5 Values and Services of Habitats ................................... 5 Species Values ......................................... 5 Biological diversity ...................................... 6 Ecosystem Services.. .................................... 7 Activities Impacting Habitats ..................................... 8 Land Conversion ....................................... 9 Land Conversion to Industrial and Residential Uses ............. 9 Land Conversion to Agricultural Uses ...................... 10 Land Conversion to Transportation Uses .................... 10 Timber Harvesting ...................................... 11 Grazing ............................................. 12 Mining ............................................. -
Forest Production Ecology • Objectives – Overview of Forest Production Ecology • C Cycling – Primary Productivity of Trees and Forest Ecosystems
Forest Production Ecology • Objectives – Overview of forest production ecology • C cycling – Primary productivity of trees and forest ecosystems … ecologists and ecosystem managers are unlikely to achieve desired management objectives unless they are familiar with the distribution and movements of energy that are responsible for the character and productivity of ecosystems under their management. (Kimmins 2004) – First: questions, take-home points, things you learned, etc. from reading assignment 1 Forest Production Ecology • Why should you care about C cycling? – C is the energy currency of all ecosystems • Plant (autotrophic) production is the base of almost all food/energy pyramids • Underlies all ecosystem goods & services – Plant C cycling, to a large extent, controls atmospheric CO2 concentrations (i.e., climate) • 3-4x as much C in terrestrial ecosystems as the atmosphere • Forests account for ~80% of global plant biomass and ~50% of global terrestrial productivity – C is fundamental to soil processes (i.e., SOM) • Belowground resources are a primary control over all ecosystem processes 2 Forest Production Ecology •Global Carbon Cycle ≈ “Breathing” of Earth 3 Forest Production Ecology • C enters via photosynthesis The C Bank Account 1. Gross Primary Production (GPP) •Total C input via photosynthesis 2. Accumulates in ecosystems (C pools/storage) as: (a) plant biomass; (b) SOM & microbial biomass; or (c) animal biomass 3. Returned to the atmosphere via: (a) respiration (R; auto- or hetero-trophic); (b) VOC emissions; or (c) disturbance Chapin et al. (2011) 4. Leached from or transferred laterally to another ecosystem Forest Production Ecology • Keys to understanding biological C cycling 1. Pools (storage) vs. fluxes (flows) of C • Live and dead (detrital) biomass • Above- and belowground 2. -
Microbial Lithification in Marine Stromatolites and Hypersaline Mats
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by RERO DOC Digital Library Published in Trends in Microbiology 13,9 : 429-438, 2005, 1 which should be used for any reference to this work Microbial lithification in marine stromatolites and hypersaline mats Christophe Dupraz1 and Pieter T. Visscher2 1Institut de Ge´ ologie, Universite´ de Neuchaˆ tel, Rue Emile-Argand 11, CP 2, CH-2007 Neuchaˆ tel, Switzerland 2Center for Integrative Geosciences, Department of Marine Sciences, University of Connecticut, 1080 Shennecossett Road, Groton, Connecticut, 06340, USA Lithification in microbial ecosystems occurs when pre- crucial role in regulating sedimentation and global bio- cipitation of minerals outweighs dissolution. Although geochemical cycles. the formation of various minerals can result from After the decline of stromatolites in the late Proterozoic microbial metabolism, carbonate precipitation is pos- (ca. 543 million years before present), microbially induced sibly the most important process that impacts global and/or controlled precipitation continued throughout the carbon cycling. Recent investigations have produced geological record as an active and essential player in most models for stromatolite formation in open marine aquatic ecosystems [9,10]. Although less abundant than in environments and lithification in shallow hypersaline the Precambrian, microbial precipitation is observed in a lakes, which could be highly relevant for interpreting the multitude of semi-confined (physically or chemically) -
Chloroplasts Are the Food Producers of the Cell. the Organelles Are Only Found in Plant Cells and Some Protists Such As Algae
Name: ___________________________ Cell #2 H.W. due September 22nd, 2016 Period: _________ Chloroplasts are the food producers of the cell. The organelles are only found in plant cells and some protists such as algae. Animal cells do not have chloroplasts. Chloroplasts work to convert light energy of the Sun into sugars that can be used by cells. It is like a solar panel that changes sunlight energy into electric energy. The entire process is called photosynthesis and it all depends on the little green chlorophyll molecules in each chloroplast. In the process of photosynthesis, plants create sugars and release oxygen (O2). The oxygen released by the chloroplasts is the same oxygen you breathe every day. Chloroplasts are found in plant cells, but not in animal cells. The purpose of the chloroplast is to make sugars that feed the cell’s machinery. Photosynthesis is the process of a plant taking energy from the Sun and creating sugars. When the energy from the Sun hits a chloroplast and the chlorophyll molecules, light energy is converted into the chemical energy. Plants use water, carbon dioxide, and sunlight to make sugar and oxygen. During photosynthesis radiant energy or solar energy or light energy is transferred into chemical energy in the form of sugar (glucose). You already know that during photosynthesis plants make their own food. The food that the plant makes is in the form of sugar that is used to provide energy for the plant. The extra sugar that the plant does not use is stored as starch for later use. Mitochondria are known as the powerhouses of the cell.