X-Ray Fluorescence Elemental Mapping of Roots, Stems and Leaves of the Nickel Hyperaccumulators Rinorea Cf
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
A Systematic Study of Berkheya and Allies (Compositae)
A systematic study of Berkheya and allies (Compositae) A thesis submitted in the fulfilment of the requirements for the degree of Master of Science of Rhodes University by Ntombifikile Phaliso April 2013 Supervisor: Prof. N.P. Barker (Botany Department, Rhodes University) Co-supervisor: Dr. Robert McKenzie (Botany Department, Rhodes University) Table of contents: Title ……………………………………………………………………………..I Acknowledgements…………………………………………………………...III Declaration……………………………………………………………………IV Abstract…………………………………………………………………………1 Chapter 1: General Introduction……………………………………………..3 Chapter 2: The molecular phylogeny of Berkheya and allies……………...12 Aims………………………………………………………………………………………….12 2.1: Molecular (DNA-based) systematic……………………………………………………..12 2.2: Methods and Materials…………………………………………………………………..18 2.1.1: Sampling…………………………………………………………………………..18 2.1.2: DNA extraction, amplification and sequencing…………………………………..18 2.1.3: Sequence alignment……………………………………………………………..19 2.1.4: Phylogenetic Analyses …………………………………………………………...21 2.3: Results…………………………………………………………………………………..22 2.3.1: ITS data set………………………………………………………………………..22 2.3.2: psbA-trnH data set………………………………………………………………..23 2.3.3: Combined data set………………………………………………………………...24 2.4: Discussion……………………………………………………………………………….28 2.4.1: Phylogenetic relationships within the Berkheya clade……………………………28 2.4.2: Insights from the psbA-trnH & combined data set phylogenies………………….37 2.4.3: Taxonomic implications: paraphyly of Berkheya………………………………...39 2.4.4: Taxonomic Implications: Correspondence with -
Ultramafic Geocology of South and Southeast Asia
Galey et al. Bot Stud (2017) 58:18 DOI 10.1186/s40529-017-0167-9 REVIEW Open Access Ultramafc geoecology of South and Southeast Asia M. L. Galey1, A. van der Ent2,3, M. C. M. Iqbal4 and N. Rajakaruna5,6* Abstract Globally, ultramafc outcrops are renowned for hosting foras with high levels of endemism, including plants with specialised adaptations such as nickel or manganese hyperaccumulation. Soils derived from ultramafc regoliths are generally nutrient-defcient, have major cation imbalances, and have concomitant high concentrations of potentially phytotoxic trace elements, especially nickel. The South and Southeast Asian region has the largest surface occur- rences of ultramafc regoliths in the world, but the geoecology of these outcrops is still poorly studied despite severe conservation threats. Due to the paucity of systematic plant collections in many areas and the lack of georeferenced herbarium records and databased information, it is not possible to determine the distribution of species, levels of end- emism, and the species most threatened. However, site-specifc studies provide insights to the ultramafc geoecology of several locations in South and Southeast Asia. The geoecology of tropical ultramafc regions difers substantially from those in temperate regions in that the vegetation at lower elevations is generally tall forest with relatively low levels of endemism. On ultramafc mountaintops, where the combined forces of edaphic and climatic factors inter- sect, obligate ultramafc species and hyperendemics often occur. Forest clearing, agricultural development, mining, and climate change-related stressors have contributed to rapid and unprecedented loss of ultramafc-associated habitats in the region. The geoecology of the large ultramafc outcrops of Indonesia’s Sulawesi, Obi and Halmahera, and many other smaller outcrops in South and Southeast Asia, remains largely unexplored, and should be prioritised for study and conservation. -
Berkheya – Bew(A)Ehrte Blütenwunder
✓⇠⌫⌧⇠⇡⌫⇠⌦⇤⇠ ⇥⌃↵⌅⌃⌅⌥⌥⌥✏⇣ ↵⇠⇢⇠ ⌦ Berkheya – bew(a)ehrte Blütenwunder SVEN NUERNBERGER Abstract The range of distribution of the genus Berkheya is centered in South Africa. Berkheya purpurea and B. multijuga reach high into the mountains of the Drakensberge and, accordingly, are adapted to cold and frost. With their conspicuous coloration and im- pressive large flower heads they are most suitable as ornamental herbaceous perennials. Zusammenfassung Südafrika ist das Hauptverbreitungsgebiet der Gattung Berkheya. Berkheya purpurea und B. multijuga dringen bis in die küh- len Gebirgsregionen der Drakensberge vor und verfügen daher über eine entsprechende Kälte- und Frosttoleranz. Ihre auffal- lend gefärbten Korbblüten von beachtlicher Größe machen sie für den Staudengarten interessant. 1. Einleitung Buschland (Fynbos) in tieferen Lagen. So kommt Neben den echten Disteln, die bekanntlich zu z. B. Berkheya zeyheri in Brachystegia-Wäldern den Korbblütlern gehören, gibt es viele distel- Mozambiques vor (HYDE & WURSTEN 2010). ähnliche Pflanzen, die zu verschiedenen anderen Die großen Zungenblüten einiger Arten sind in- Pflanzenfamilien zählen. Die hoch geschätzten tensiv gefärbt und lassen die engere Verwandt- Edeldisteln beispielsweise sind Doldenblütler schaft zu bekannten Zierpflanzen wie Gazania (Apiaceae) der Gattung Eryngium und die lang- und Arctotis erkennen. Innerhalb der Tribus blättrige Kardendistel (Morina longifolia) ist ein Arctotideae steht den Berkheyen die Gattung Geißblattgewächs (Caprifoliaceae). Innerhalb der Cullumia, deren Arten ebenfalls stachelig be- Korbblütler stehen auch die “African thistles“ wehrt sind, am nächsten (FUNK & CHAN 2008). der Gattung Berkheya. Sie sind mit Gazanien und Berkheya purpurea und B. multijuga sind vor Bärenohren (Arctotis) näher verwandt als mit den kurzem in das Blickfeld der Pflanzenproduzen- echten Disteln. Aufgrund ihres besonders attrak- ten gerückt. -
Genetic Diversity and Evolution in Lactuca L. (Asteraceae)
Genetic diversity and evolution in Lactuca L. (Asteraceae) from phylogeny to molecular breeding Zhen Wei Thesis committee Promotor Prof. Dr M.E. Schranz Professor of Biosystematics Wageningen University Other members Prof. Dr P.C. Struik, Wageningen University Dr N. Kilian, Free University of Berlin, Germany Dr R. van Treuren, Wageningen University Dr M.J.W. Jeuken, Wageningen University This research was conducted under the auspices of the Graduate School of Experimental Plant Sciences. Genetic diversity and evolution in Lactuca L. (Asteraceae) from phylogeny to molecular breeding Zhen Wei Thesis submitted in fulfilment of the requirements for the degree of doctor at Wageningen University by the authority of the Rector Magnificus Prof. Dr A.P.J. Mol, in the presence of the Thesis Committee appointed by the Academic Board to be defended in public on Monday 25 January 2016 at 1.30 p.m. in the Aula. Zhen Wei Genetic diversity and evolution in Lactuca L. (Asteraceae) - from phylogeny to molecular breeding, 210 pages. PhD thesis, Wageningen University, Wageningen, NL (2016) With references, with summary in Dutch and English ISBN 978-94-6257-614-8 Contents Chapter 1 General introduction 7 Chapter 2 Phylogenetic relationships within Lactuca L. (Asteraceae), including African species, based on chloroplast DNA sequence comparisons* 31 Chapter 3 Phylogenetic analysis of Lactuca L. and closely related genera (Asteraceae), using complete chloroplast genomes and nuclear rDNA sequences 99 Chapter 4 A mixed model QTL analysis for salt tolerance in -
Berkheya Setifera DC
Alfred Maroyi et al /J. Pharm. Sci. & Res. Vol. 11(8), 2019, 2942-2948 A review of botany, medicinal uses and biological activities of Berkheya setifera DC. (Asteraceae) Alfred Maroyi Medicinal Plants and Economic Development (MPED) Research Centre, Department of Botany, University of Fort Hare, Private Bag X1314, Alice 5700, South Africa Abstract Berkheya setifera is a well-known plant species in southern Africa in traditional and folk medicine. This study is aimed at providing a critical review of the botany, biological activities and medicinal uses of B. setifera. Documented information on botany, biological activities and medicinal uses of B. setifera was collected from several online sources which included BMC, Scopus, SciFinder, Google Scholar, Science Direct, Elsevier, Pubmed and Web of Science. Additional information on the botany, biological activities and medicinal uses of B. setifera was sourced from book chapters, books, journal articles, theses and scientific publications sourced from the University of Fort Hare library. The current study showed that the leaves and roots of B. setifera are traditionally used in 60% of the countries where the species is indigenous. Berkheya setifera is used as herbal medicine for 28 human diseases which include abdominal pains, arthritis, blood circulatory problems, colds, coughs, itching skin and rash, jaundice, kidney problems, magical uses, stomach complaints, sterility and uterine disorders. Pharmacological research revealed that B. setifera extracts have antibacterial, antimalarial, anti-inflammatory, antioxidant, haemolysis, antifungal and cytotoxicity properties. Future studies should concentrate on assessing the phytochemical, pharmacological and toxicological activities of B. setifera crude extracts as well as chemical ingredients isolated from the species. -
Kenneth J. Wurdack 2,4 and Charles C. Davis
American Journal of Botany 96(8): 1551–1570. 2009. M ALPIGHIALES PHYLOGENETICS: GAINING GROUND ON ONE OF THE MOST RECALCITRANT CLADES IN THE ANGIOSPERM TREE OF LIFE 1 Kenneth J. Wurdack 2,4 and Charles C. Davis3,4 2 Department of Botany, Smithsonian Institution, P.O. Box 37012 NMNH MRC-166, Washington, District of Columbia 20013-7012 USA; and 3 Department of Organismic and Evolutionary Biology, Harvard University Herbaria, 22 Divinity Avenue, Cambridge, Massachusetts 02138 USA The eudicot order Malpighiales contains ~16 000 species and is the most poorly resolved large rosid clade. To clarify phyloge- netic relationships in the order, we used maximum likelihood, Bayesian, and parsimony analyses of DNA sequence data from 13 gene regions, totaling 15 604 bp, and representing all three genomic compartments (i.e., plastid: atpB , matK , ndhF, and rbcL ; mitochondrial: ccmB , cob , matR , nad1B-C , nad6, and rps3; and nuclear: 18S rDNA, PHYC, and newly developed low-copy EMB2765 ). Our sampling of 190 taxa includes representatives from all families of Malpighiales. These data provide greatly in- creased support for the recent additions of Aneulophus , Bhesa , Centroplacus , Ploiarium , and Raffl esiaceae to Malpighiales; sister relations of Phyllanthaceae + Picrodendraceae, monophyly of Hypericaceae, and polyphyly of Clusiaceae. Oxalidales + Huaceae, followed by Celastrales are successive sisters to Malpighiales. Parasitic Raffl esiaceae, which produce the world’ s largest fl owers, are confi rmed as embedded within a paraphyletic Euphorbiaceae. Novel fi ndings show a well-supported placement of Ctenolopho- naceae with Erythroxylaceae + Rhizophoraceae, sister-group relationships of Bhesa + Centroplacus , and the exclusion of Medu- sandra from Malpighiales. New taxonomic circumscriptions include the addition of Bhesa to Centroplacaceae, Medusandra to Peridiscaceae (Saxifragales), Calophyllaceae applied to Clusiaceae subfamily Kielmeyeroideae, Peraceae applied to Euphorbi- aceae subfamily Peroideae, and Huaceae included in Oxalidales. -
Nitella Congesta - a Charophyte As a Tool for the Rehabilitation of Sand Mine-Void Wetlands at Capel, Western Australia
Department of Environmental and Aquatic Sciences Nitella congesta - a charophyte as a tool for the rehabilitation of sand mine-void wetlands at Capel, Western Australia Isaac Kwamina Eshun Annan This thesis is presented for the Degree of Doctor of Philosophy of Curtin University of Technology November 2008 Declaration DECLARATION To the best of my knowledge and belief this thesis contains no material previously published by any other person except where due acknowledgement has been made. This thesis contains no material which has been accepted for the award of any other degree or diploma in any university. Signature: ………………………….. Date: …………………. i Dedication DEDICATION This work is dedicated to Mrs. Sarah Dosoo (nee Annan) whose selfless sacrifice twenty five (25) years ago paved way for me to come this far in my academic pursuit. Sarah, may the Good Lord richly bless you for your selflessness. ii Acknowledgements ACKNOWLEDGEMENTS To God Be The Glory; Great Things He Has Done! I thank God for His abundant grace that saw me through this work successfully. I wish to thank my supervisor, Asso. Prof. Jacob John for introducing me to this field of study with his directions, constructive criticisms and valuable feedback. I also thank my associate supervisor, Dr. Lynne Robert Jones for his valuable contributions and guidance in this work. I also wish to thank the Administrative staff of the Department of Environmental and Aquatic Sciences, Prof. Jonathan Majer, Head of Department, Mrs. Enid Holt and Glenice Carmody for the administrative assistance. I extend my gratitude to the chairperson of my thesis committee, Dr. Beng Tan for his concern and support. -
The Naturalized Vascular Plants of Western Australia 1
12 Plant Protection Quarterly Vol.19(1) 2004 Distribution in IBRA Regions Western Australia is divided into 26 The naturalized vascular plants of Western Australia natural regions (Figure 1) that are used for 1: Checklist, environmental weeds and distribution in bioregional planning. Weeds are unevenly distributed in these regions, generally IBRA regions those with the greatest amount of land disturbance and population have the high- Greg Keighery and Vanda Longman, Department of Conservation and Land est number of weeds (Table 4). For exam- Management, WA Wildlife Research Centre, PO Box 51, Wanneroo, Western ple in the tropical Kimberley, VB, which Australia 6946, Australia. contains the Ord irrigation area, the major cropping area, has the greatest number of weeds. However, the ‘weediest regions’ are the Swan Coastal Plain (801) and the Abstract naturalized, but are no longer considered adjacent Jarrah Forest (705) which contain There are 1233 naturalized vascular plant naturalized and those taxa recorded as the capital Perth, several other large towns taxa recorded for Western Australia, com- garden escapes. and most of the intensive horticulture of posed of 12 Ferns, 15 Gymnosperms, 345 A second paper will rank the impor- the State. Monocotyledons and 861 Dicotyledons. tance of environmental weeds in each Most of the desert has low numbers of Of these, 677 taxa (55%) are environmen- IBRA region. weeds, ranging from five recorded for the tal weeds, recorded from natural bush- Gibson Desert to 135 for the Carnarvon land areas. Another 94 taxa are listed as Results (containing the horticultural centre of semi-naturalized garden escapes. Most Total naturalized flora Carnarvon). -
Bacterial Community Diversity in the Rhizosphere of Nickel
1 Bacterial community diversity in the rhizosphere of nickel 2 hyperaccumulator plant species from Borneo Island (Malaysia) 3 4 Séverine Lopez,1 Antony van der Ent,1,2 Sukaibin Sumail,3 John B. Sugau,3 Matsain Mohd 5 Buang,4 Zarina Amin,5 Guillaume Echevarria,1,2 Jean Louis Morel1 and Emile Benizri1 6 7 1Université de Lorraine, INRAE, Laboratoire Sols et Environnement, 54000, Nancy, France. 8 9 2Centre for Mined Land Rehabilitation, Sustainable Minerals Institute, The University of 10 Queensland, St Lucia, 4072, QLD, Australia. 11 12 3Sabah Parks, Kota Kinabalu, Sabah, Malaysia. 13 14 4Forest Research Centre, Sabah Forestry Department, Sandakan, Sabah, Malaysia. 15 16 5Biotechnology Research Institute, Universiti Malaysia Sabah, Kota Kinabalu, Sabah, 17 Malaysia. 18 19 20 SUMMARY 21 The Island of Borneo is a major biodiversity hotspot, and in the Malaysian state of Sabah, 22 ultramafic soils are extensive and home to more than 31 endemic nickel hyperaccumulator 23 plants. The aim of this study was to characterize the structure and the diversity of the 24 rhizosphere bacterial communities of several of these nickel hyperaccumulator plants and 25 factors that affect these bacterial communities in Sabah. The most abundant phyla were 26 Proteobacteria, Acidobacteria and Actinobacteria. At family level, Burkholderiaceae and 27 Xanthobacteraceae (Proteobacteria phylum) were the most abundant families in the 28 hyperaccumulator rhizospheres. Redundancy analysis based on soil chemical analyses and 29 relative abundances of the major bacterial phyla showed that abiotic factors of the studied sites 30 drove the bacterial diversity. For all R. aff. bengalensis rhizosphere soil samples, irrespective 31 of studied site, the bacterial diversity was similar. -
Key to the Species Accounts
Key to the species accounts Species and infraspecific taxa are arranged alphabetically by family, genus, and species to facilitate easy lookup. Where available, synonyms are also included. Note that families are listed alphabetically, regardless of whether they are dicotyle- dons or monocotyledons. Endemic and protected species are identified by the following icons: C1 CITES Appendix I C2 CITES Appendix II E Endemic taxon P Protected under Nature Conservation Ordinance 4 of 1975 Status The conservation status is indicated by the following abbreviations: CR Critically Endangered EN Endangered LC Least Concern NT Near Threatened R Rare VU Vulnerable Description Description of the growth form and major distinguishing characters of each taxon. Rationale Brief explanation of the reasons for listing and the factors that contributed to a particular assessment. Habitat Short description of habitat and altitude (in metres) where taxon may be expected to occur. Threats List of the main factors that threaten the taxon with extinction in Namibia. Additional notes Other important information. Where available, common names are included in this section. Red Data Book of Namibian Plants i Red Data Book of Namibian Plants Sonja Loots 2005 Southern African Botanical Diversity Network Report No. 38 ii Red Data Book of Namibian Plants Citation LOOTS S. 2005. Red Data Book of Namibian plants. Southern African Botanical Diversity Network Report No. 38. SABONET, Pretoria and Windhoek. Address for Correspondence National Botanical Research Institute Private Bag 13184 Windhoek NAMIBIA Tel: +264 61 2022013 Fax: +264 61 258153 E-mail: [email protected] Issued by The Project Coordinator Southern African Botanical Diversity Network c/o National Botanical Institute Private Bag X101 Pretoria 0001 SOUTH AFRICA Printed in 2005 in the Republic of South Africa by Capture Press, Pretoria, (27) 12 349-1802 ISBN 1-919976-16-7 © SABONET. -
Ultramafic Geoecology of South and Southeast Asia M
Galey et al. Bot Stud (2017) 58:18 DOI 10.1186/s40529-017-0167-9 REVIEW Open Access Ultramafic geoecology of South and Southeast Asia M. L. Galey1, A. van der Ent2,3, M. C. M. Iqbal4 and N. Rajakaruna5,6* Abstract Globally, ultramafic outcrops are renowned for hosting floras with high levels of endemism, including plants with specialised adaptations such as nickel or manganese hyperaccumulation. Soils derived from ultramafic regoliths are generally nutrient-deficient, have major cation imbalances, and have concomitant high concentrations of potentially phytotoxic trace elements, especially nickel. The South and Southeast Asian region has the largest surface occur- rences of ultramafic regoliths in the world, but the geoecology of these outcrops is still poorly studied despite severe conservation threats. Due to the paucity of systematic plant collections in many areas and the lack of georeferenced herbarium records and databased information, it is not possible to determine the distribution of species, levels of end- emism, and the species most threatened. However, site-specific studies provide insights to the ultramafic geoecology of several locations in South and Southeast Asia. The geoecology of tropical ultramafic regions differs substantially from those in temperate regions in that the vegetation at lower elevations is generally tall forest with relatively low levels of endemism. On ultramafic mountaintops, where the combined forces of edaphic and climatic factors inter- sect, obligate ultramafic species and hyperendemics often occur. Forest clearing, agricultural development, mining, and climate change-related stressors have contributed to rapid and unprecedented loss of ultramafic-associated habitats in the region. The geoecology of the large ultramafic outcrops of Indonesia’s Sulawesi, Obi and Halmahera, and many other smaller outcrops in South and Southeast Asia, remains largely unexplored, and should be prioritised for study and conservation. -
Elemental Distribution in Reproductive and Neural Organs of The
CORE Metadata, citation and similar papers at core.ac.uk Title: Elemental Distribution in Reproductive and Neural Organs of the Epilachna nylanderi (Coleoptera: Coccinellidae), a Phytophage of Nickel Hyperaccumulator Berkheya coddii (Asterales: Asteraceae) by micro-PIXE Author: Jolanta Mesjasz-Przybyłowicz, Elżbieta Orłowska, Maria Augustyniak, Mirosław Nakonieczny, Monika Tarnawska, Wojciech Przybyłowicz, Paweł Migula Citation style: Mesjasz-Przybyłowicz Jolanta, Orłowska Elżbieta, Augustyniak Maria, Nakonieczny Mirosław, Tarnawska Monika, Przybyłowicz Wojciech, Migula Paweł. (2014). Elemental Distribution in Reproductive and Neural Organs of the Epilachna nylanderi (Coleoptera: Coccinellidae), a Phytophage of Nickel Hyperaccumulator Berkheya coddii (Asterales: Asteraceae) by micro-PIXE. “Journal of Insect Science” Vol. 14, iss. 1 (2014), art. no 152, DOI 10.1093/jisesa/ieu014 Journal of Insect Science RESEARCH Elemental Distribution in Reproductive and Neural Organs of the Epilachna nylanderi (Coleoptera: Coccinellidae), a Phytophage of Nickel Hyperaccumulator Berkheya coddii (Asterales: Asteraceae) by micro-PIXE Jolanta Mesjasz-Przybyłowicz,1 Elz˙bieta Orłowska,1,2 Maria Augustyniak,3 Mirosław Nakonieczny,3 Monika Tarnawska,3 1,4 3,5 Wojciech Przybyłowicz, and Paweł Migula Downloaded from https://academic.oup.com/jinsectscience/article-abstract/14/1/152/2380736 by Uniwersytet Slaski user on 15 October 2019 1Materials Research Department, iThemba LABS, National Research Foundation, P.O. Box 722, Somerset West 7129, South Africa 2Department of Molecular Biology and Genetics, University of Aarhus, Gustav Wieds Vej 10 C, Aarhus C 8000, Denmark 3Department of Animal Physiology and Ecotoxicology, University of Silesia, Bankowa 9, Katowice 40-007, Poland 4AGH University of Science and Technology, Faculty of Physics & Applied Computer Science, al. A. Mickiewicza 30, Krako´w 30-059, Poland 5Corresponding author, e-mail: [email protected] Subject Editor: Yoonseong Park J.