Linking rainforest ecophysiology and microclimate through fusion of airborne LiDAR and hyperspectral imagery 1,2,3,7, 1,3,4,7 1 EBEN N. BROADBENT, ANGE´ LICA M. ALMEYDA ZAMBRANO, GREGORY P. A SNER, 1 5 1 1 1,2 CHRISTOPHER B. FIELD, BRAD E. ROSENHEIM, TY KENNEDY-BOWDOIN, DAVID E. KNAPP, DAVID BURKE, 6 6 CHRISTIAN GIARDINA, AND SUSAN CORDELL
1Department of Global Ecology, Carnegie Institution, 260 Panama Street, Stanford, California 94305 USA 2Department of Biology, Stanford University, Stanford, California 94305 USA 3Sustainability Science Program, Kennedy School of Government, Harvard University, Cambridge, Massachusetts 02138 USA 4Department of Anthropology, Stanford University, Stanford, California 94305 USA 5Department of Earth & Environmental Sciences, Tulane University, New Orleans, Louisiana 70118 USA 6Institute of Pacific Islands Forestry, Hilo, Hawaii 96720 USA
Citation: Broadbent, E. N., A. M. Almeyda Zambrano, G. P. Asner, C. B. Field, B. E. Rosenheim, T. Kennedy-Bowdoin, D. E. Knapp, D. Burke, C. Giardina, and S. Cordell. 2014. Linking rainforest ecophysiology and microclimate through fusion of airborne LiDAR and hyperspectral imagery. Ecosphere 5(5):57. http://dx.doi.org/10.1890/ES13-00255.1
Abstract. We develop and validate a high-resolution three-dimensional model of light and air temperature for a tropical forest interior in Hawaii along an elevation gradient varying greatly in structure but maintaining a consistent species composition. Our microclimate models integrate high- resolution airborne waveform light detection and ranging data (LiDAR) and hyperspectral imagery with detailed microclimate measurements. We then use modeled microclimate and forest structural and compositional variables to explain variation in spatially explicit measurements of leaf traits, including gas exchange and structure. Our results highlight the importance of: (1) species differences in leaf traits, with species explaining up to 65% of the variation in some leaf traits; (2) differences between exotic and native species, with exotic species having greater maximum rates of assimilation and foliar d15N values; (3) structural factors, with foliar %N and light saturation of photosynthesis decreasing in mid-canopy locations; (4) microclimate factors, with foliar %N and light saturation increasing with growth environment illumination; and (5) decreases in mean annual temperature with elevation resulting in closure of the nitrogen cycle, as indicated through decreases in foliar d15N values. The dominant overstory species (Metrosideros polymorpha) did not show plasticity in photosynthetic capacity, whereas the dominant understory species (Cibotium glaucum) had higher maximum rates of assimilation in more illuminated growth environments. The approach developed in this study highlights the potential of new airborne sensors to quantify forest productivity at spatial and temporal scales not previously possible. Our results provide insight into the function of a Hawaiian forest dominated by native species undergoing simultaneous biological invasion and climatic change.
Key words: canopy structure; Carnegie Airborne Observatory; climate change; direct and diffuse light; induction rate; Laupahoehoe Natural Area Reserve; photosynthetic active radiation (PAR); sun fleck; tropical forest.
Received 14 August 2013; revised 5 February 2014; accepted 12 March 2014; published 16 May 2014. Corresponding Editor: D. P. C. Peters. Copyright: Ó 2014 Broadbent et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. http://creativecommons.org/licenses/by/3.0/ 7 Present address: Department of Geography, University of Alabama, Tuscaloosa, Alabama 35487 USA. E-mail: [email protected]
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INTRODUCTION Hollinger 1989, Ellsworth and Reich 1993, Dang et al. 1997). Tropical forests cover 11.7% of the global land It remains unclear, however, how foliar accli- surface area (Potter et al. 1993), contain 57% of mation and development adjusts to differing above- and 27% of belowground carbon (Dixon types and variability of irradiance (Meir et al. et al. 1994), and are important contributors to the 2002, Bai et al. 2008). This is especially relevant terrestrial global carbon cycle (Field et al. 1998, when considering communities of diverse spe- Cramer et al. 2004). Carbon fluxes and overall cies, although the importance of such differences productivity within these forests are highly has been demonstrated (Chazdon and Field dependent upon light and temperature regimes 1987). Understanding drivers of leaf trait varia- (Boisvenue and Running 2006), which are pre- tion in different species or functional groups dicted to undergo changes in the future (Hulme (Poorter et al. 2006) is especially relevant in and Viner 1998, Mercado et al. 2009, Hansen et al. taxonomically and architecturally diverse, but 2010). Light within a forest understory is light limited, tropical forest understory environ- considered to be the most important (Mercado ments. A number of factors diminish the strength et al. 2009), and limiting (Stadt et al. 2005), of relationships between light availability and environmental factor influencing photosynthesis investment in photosynthetic capacity, including and carbon gain (Ellsworth and Reich 1992, Kull light saturation, partitioning of nitrogen for non- 2002, Araujo et al. 2008). Overall, light penetra- photosynthesis activities, leaf aging, and position tion to a tropical forest understory is among the (Field 1983), or variation in temperature, wind lowest of terrestrial ecosystems (Chazdon and speed, precipitation and nutrient availability, as Pearcy 1991). The light which does exist is well as species differences (Dang et al. 1997). temporally variable, due to time of day, season Ecosystem processes within tropical forests, or climatic conditions, and is highly dependent such as overall productivity (Baldocchi and on the structure and density of both the forest Harley 1995), occur within a complex three- under- and over-story (Montgomery 2004). De- dimensional architecture (Koetz et al. 2007). spite light limitation, the understory can make Interactions between architecture and microcli- substantial contributions to overall forest pro- mate require further study (Gastellu-Etchegorry ductivity. For example, Sampson et al. (2006) and Trichon 1998). Failure to include spatial data calculated understory plants contributed up to on forest architecture, for example, can result in 28% of a deciduous forest’sgrossprimary large errors from simple big-leaf models (Bal- productivity due to understory penetration by docchi and Harley 1995, Knohl and Baldocchi diffuse radiation. 2008). Attempts to estimate daily light regimes Variationinmicroclimateoftenresultsin using traditional methods, such as hemispherical predictable changes in leaf traits (Poorter et al. photographs, have resulted in inaccurate values, 2006). The established paradigm is that photo- up to 107% greater than those shown from synthesis is N limited (Evans 1989), and numer- understory photosynthetic active radiation ous studies have shown the significant positive (PAR) sensors (Johnson and Smith 2006). Light relationship between leaf N content and maxi- regime modeling approaches explicitly integrat- mum photosynthesis capacity (Amax) (Chazdon ing manually collected leaf area distributions and Field 1987, Evans 1989, Evans and Poorter showed greatly improved results (Aubin et al. 2001), independent of species differences (Wal- 2000, Gersonde et al. 2004). ters and Field 1987). Given this, forest canopies High-resolution light detection and ranging should optimize both the distribution of their (LiDAR) sensors allow incorporation of spatially leaves for high light capture efficiency and leaf explicit information into microclimate models at photosynthetic rates according to their irradiance scales infeasible through field data collection. growth environment (Field 1983, Meir et al. 2002, Airborne LiDAR has recently been used to Laisk et al. 2005). Canopy optimization of N accurately estimate forest height (Hudak et al. distribution and photosynthetic capacity to light 2002, Sexton et al. 2009, Dubayah et al. 2010), availability has been shown within a variety of biomass (Asner et al. 2008a, Boudreau et al. 2008, crop and forest stands (Hirose et al. 1989, Asner et al. 2012, Meyer et al. 2013), and
v www.esajournals.org 2 May 2014 v Volume 5(5) v Article 57 BROADBENT ET AL. architecture (Omasa et al. 2007), including gap selected study forest, a model ecosystem having dynamics (Koukoulas and Blackburn 2004, Kell- a near mono-dominant canopy species and both ner and Asner 2009). The capacity to quantify invasive and native species coupled with an forest structure over large areas at high resolu- extraordinary elevation gradient along the slope tions has led to insights into ecosystem function of Mauna Kea volcano, enables addressing (Asner et al. 2008a, b), including patterns of questions related to relationships among forest canopy height heterogeneity not visible at small- structure, climate and ecophysiology not feasible er scales (Vitousek et al. 2009). Discrete LiDAR, in other systems. The specific research objectives in which a small number of individual laser of this study are to: (1) develop and validate a pulses are used (Lim et al. 2003), has more high resolution three-dimensional model of recently, been combined with hyperspectral forest microclimate using a coupled airborne imagery and used to generate maps of leaf LiDAR–hyperspectral sensor; and then to (2) chlorophyll (Thomas et al. 2006), providing integrate remote sensing information and mod- insights into flux tower measurements of gross eled microclimate data to better understand the ecosystem productivity (Thomas et al. 2009). taxonomic, structural and microclimatic determi- Waveform LiDAR (i.e., wLiDAR) differs from nants of foliar ecophysiology in our study area. discrete LiDAR sensors as it records a higher point cloud per area, approximating the com- MATERIALS AND METHODS plete waveform of the backscattered echo signal (Mallet and Bretar 2009), allowing more accurate Study design estimations of forest understory architecture Fig. 1 presents the overall study design, and (Asner et al. 2007). This could lead to a better we describe in detail each component of the understandingofforestproductivityifdata flowchart below. We combined airborne remote approximates the fine scales at which canopy sensing data with spatially explicit measure- microclimate and ecophysiology are determined, ments of forest microclimate and ecophysiology. but comes at the expense of greatly increased We then developed detailed spatio-temporal storage capacity and subsequent post-processing models of microclimate and used these models requirements (Mallet and Bretar 2009). Parker et to understand variation in foliar ecophysiology. al. (2001) used wLiDAR, one of the first attempts We parameterized and validated remote sensing integrating this technology, to estimate nadir and modeling components using extensive field light transmittance statistics for two forest data. stands; however, a horizontal resolution of 10 m made detailed forest interior studies infeasible. Study site Koetz et al. (2006) used physically-based radia- This study was undertaken in the 5,016 ha tive transfer models to invert large footprint State of Hawaii Hilo Forest Reserve and Laupa- waveform LiDAR (wLiDAR) accurately estimat- hoehoe Natural Area Reserve, designated as a ing forest biophysical parameters, including leaf Hawaii Experimental Tropical Forest (HETF) of area index (LAI), tree height, and general interior the US Forest Service (USFS), located on the forest architecture. North Hilo coast of the island of Hawai’i, In this research, we develop a new approach to Hawai’i. This reserve is also the location of a map forest leaf area (2D) and leaf density (3D) at newly established Hawaii Permanent Plot Net- very high spatial scales. Using these maps, we work (HIPPNET) and Center for Tropical Forest develop and validate a three-dimensional model Science (CTFS) research plot (www.ctfs.si.edu). of direct and diffuse light transmittance and air The reserve encompasses an elevation gradient temperature throughout a tropical rainforest in from 600 to 1800 m elevation, with overall Hawaii. We then couple the microclimate models gradients in temperature and precipitation of with detailed spatially explicit measurements of 13–188C and 2000–3500 mm, respectively (Giam- plant ecophysiological characteristics across a belluca et al. 2011). A 2.5 km long by 800 m wide community of native and invasive species to study transect was established in the northern understand structural, taxonomic, and climatic central portion of the reserve extending from determinants of ecophysiological properties. The 1005 to 1343 m elevation (Fig. 2), corresponding
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Fig. 1. Overview of remote sensing and field data integration and analysis. Hyperspectral and waveform light detection and ranging (LiDAR) data were collected simultaneously using the Carnegie Airborne Observatory (CAO) while discrete LiDAR was collected separately. Field data collected for parameterization and validation included: (1) LAI-2000 for leaf area index (LAI; two-dimensional), (2) vertical leaf area density (LAD; three- dimensional) transects, (3) microclimatic data, and (4) leaf trait measurements throughout the study transect. Leaf traits included chemical and gas exchange analyses. Microclimate data included modeled daytime mean and standard deviation photosynthetic photon flux density (PPFD) and modeled mean daytime air temperature. Spatial data included location, elevation, and forest structural information. Taxonomic data included species, native vs. exotic status, and life form. Principal component analysis (PCA) axes were input into K-means analysis to identify ecophysiological similar clusters that were explained through differences in microclimate, taxonomy, and spatial location. to a mean annual temperature of 16.2–17.58C, available water capacity (websoilsurvey.nrcs. respectively, comparable to the projected increas- usda.gov, accessed 06/02/2011). The study tran- es in global temperature over the next century sect was situated to keep the native Hawaiian (Nozawa et al. 2001). While three distinct tree Metrosideros polymorpha v. glaberrima (Myrta- substrate ages exist within the reserve: 4–14, ceae) constant as the dominant canopy species, to 14–25 and 25–65 ty (ty ¼ 1000 yrs.), resulting the near exclusion of all others. Aboveground from previous lava flows, the study transect was biomass (AGB) across the study transect ranged located entirely on youngest flow (4–14 ty). The from approximately 500 Mg ha 1 at 1000 m to transect consisted of two soil types, the lower 250 Mg ha 1 at 1300 m (Asner et al. 2008a), half resting on the Akaka soil (rAK) and the simultaneous to a reduction in average canopy upper half on Honokaa silty clay loam (HTD), height from 24 to 14 m (Fig. 3). both considered well drained with moderate The lower portion of the transect begins above
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Fig. 2. Study area (C) located within the Hawaii Experimental Tropical Forest (B) in Laupahoehoe, Hawai’i (A). Inset C provides tree height at 1.25 3 1.25 m resolution, with heights ranging from 0 m (black) to 40 m (white). a biological invasion front ending around 900 m 1992). dominated by Psidium cattleianum (Myrtaceae) and Ficus rubiginosa (Moraceae) and ends below Study plots an area of natural M. polymorpha dieback Study plots were established at low (;1000 m) (Mueller-Dombois 1987). Understory plant com- and high (;1300 m) elevations and positioned to position is dominated by tree ferns (Cibotium sp.), encompass the range of forest structure found in and the small trees Cheirodendron trigynum ssp. the study transect. Six plots were located Trigynum (Araliaceae), Ilex anomala (Aquifolia- between 1000 and 1050 m and five between ceae), Myrsine lessertiana (Myrsinaceae) and 1250 and 1300 m elevations. We established a 2 m Coprosma rhynchocarpa (Rubiaceae). The primary by 30 m transect within each study plot (N ¼ 8). animal source of disturbance—constant through- Data were collected for each stem greater than out the study transect—consists of non-native 0.5 m in height and included elevation (1000 or feral pigs (Sus scrofa) which root the forest floor 1300 m), species, native vs. non-native status, and propagate invasive species (Stone et al. height (m), and diameter (cm; at breast height
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Fig. 3. Tree height (m) and leaf area index (LAI; m2/m2) for 50 m elevation classes. Data derived from airborne hyperspectral imagery (1.25 3 1.25 m resolution) with N . 500,000 pixels per elevation class. when applicable, i.e., DBH). Volume (cm3)was mode and reflectors to avoid erroneous pulse calculated as basal area (cm2) multiplied by returns on a tripod a known height (mh; cm) height (cm). Density (D ¼ no.P of individuals/ directly above a study plot marker stake. Position 1000 m2), dominance (Do ¼ volume of all data returned from the Trupulse included the individuals/1000 m2) and frequency (F ¼ number straight-line distance (sd; in meters), inclination of transects containing the species) were calcu- (inc; in degrees) and azimuth (az; in degrees) lated for each species. An importance value (IV) from magnetic north. Prior to offset calculations, was calculated for each species using relative azimuth was adjusted to degrees from true north percent values (R) as compared to the median of by adding a declination of 9.758 (www.ngdc. all species, calculated as: noaa.gov/geomagmodels/struts/calcIGRFWMM). Locations of offset locations were then calculated IV ¼½RD 3 100 þ½RDo 3 100 þ½RF 3 100 ð1Þ from the marker stake as: modified from Busby et al. (2010) and Curtis and hd ¼ sd 3 cosðincÞð2Þ McIntosh (1951). Georeferenced marker stakes were established within each study plot using a x offset ¼ hd 3 sinðazÞð3Þ differentially corrected geographic positioning system (GPS) unit (GS-50þ, Leica Geosystems, y offset ¼ hd 3 cosðazÞð4Þ St. Gallen, Switzerland) incorporating multiple- bounce filtering. Following 6 to 8 hours of 5- zoffset ¼ sd 3 sinðincÞþmh ð5Þ second interval GPS data collection per marker (N ¼ 10) final post-differential correction hori- where hd ¼ horizontal distance (in meters), and zontal (XY) and vertical (Z) uncertainty were 19 x, y and z offsets are in meters from the marker 6 13 and 33 6 24 cm (mean 6 SD), respectively. stake. An accuracy assessment of geolocation offsets showed single offsets were accurate to Georeferencing ,30 cm in the vertical and horizontal dimensions All interior forest measurements were geo- over a wide range of distances (11–22 m), referenced vertically and horizontally for inte- whereas double offsets, required in only a few gration with remote sensing data. The instances when the marker stake had an ob- georeferencing procedure consisted of mounting structed view of the measurement location, were a laser rangefinder with integrated inclinometer accurate to ,64 cm vertically and horizontally. and 3D compass (Trupulse 360B, Laser Technol- ogy, Centennial, Colorado, USA) using filter
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Climate measurements validated to estimate clear sky PAR within 3% at Both top-of-canopy (TOC) climate and interior solar noon. Interior forest quantum sensors were forest microclimate measurements were collect- intercalibrated weekly in an open field for two ed. TOC measurements were acquired continu- hours with data logged every 15 seconds ously by stations at 1052 (i.e., low), 1180 (i.e., averaged to one-minute intervals and returned mid), and 1353 (i.e., high) m elevation, evenly for recalibration several times a year. spaced along the transect. TOC sensors at low and high-elevations consisted of a total quantum Leaf traits sensor (SQ-110, Apogee Instruments, Logan, Leaf trait measurements included light, CO2 Utah, USA), temperature and relative humidity, and induction gas exchange response curves, a sonic anemometer and precipitation (WXT-510, foliar mass per area, elemental C and N Vaisala, Helsinki, Finland) downloaded to a percentage, and d13C and d15N stable isotopes. datalogger (CR-200, Campbell Scientific, Logan, Foliar gas exchange measurements were ac- Utah, USA). The mid-elevation sensor array quired using a LI-6400 portable infrared gas consisted of a direct/diffuse quantum sensor analyzer (LI-COR) on the dominant species (BF3, Delta-T Devices, Cambridge, UK), a total identified by the species importance values. quantum sensor (LI-190, LI-COR, Lincoln, Ne- Single and double rope tree climbing techniques braska, USA), and temperature and relative were used to collect in situ foliar gas exchange humidity sensors (HMP45C-L20, Vaisala) down- above 2.5 m in height, while tripods were used loaded to a datalogger (CR-3000, Campbell below that height. Additional data collected at Scientific). Climate data collected every 15 each measurement location were: (1) species, (2) seconds was averaged to a one-minute interval, time and date, (3) DBH, (4) height of measure- with the exception of rainfall data that was the ment, and (5) total height of plant. Photographs sum total each minute. Four mobile interior were collected for identification by botanists at forest micro-climate stations were constructed, the University of Hawaii at Hilo in cases where each consisting of a quantum sensor (SQ-110, the species was not identified in the field. Gas Apogee Instruments), a temperature and relative exchange measurements were acquired at ambi- humidity sensor (HOBO U23-002, Onset Com- ent leaf temperature, between 238 and 278C, on puter, Bourne, Massachusetts, USA) and a cup mature leaves with relative humidity maintained anemometer (200-WS-01, Novalynx, Auburn, between 65% and 75% and following a minimum California, USA). PAR measurements, from the 30-minute LI-COR 6400 stabilization period. quantum sensors, and wind speed data were Most measurements were conducted with the downloaded to a datalogger (CR-10x, Campbell cuvette leaf area at capacity (6 cm2); however, Scientific) while temperature and relative humid- when leaves smaller than 6 cm2 were used, leaf ity data were internally logged. Microclimate area was measured in the field and gas exchange data were logged every 15 seconds and averaged measurements were adjusted accordingly. Each to one-minute intervals. In addition, PAR data of the three response curves were collected on were logged every three seconds for the initial separate leaves located immediately adjacent to five minutes of each hour. each other and having similar characteristics. TOC PAR sensors were intercalibrated using Curves were measured between the hours of known clear sky days to the mid-elevation 09:00 and 16:00 at a flow rate of 400 mol air s 1. quantum sensor, which was recalibrated annual- Light response curves were collected at a ly, and calibration drift was removed using a constant reference chamber CO2 concentration 1 clear sky PAR model coded in the R language (R (lmol CO2 mol air) of 400 and by increasing Development Core Team 2013) and modified the photosynthetic photon flux density (PPFD or from equations provided by Apogee Inc. and as Q; lmol m 2 s 1), i.e., encompassing the 400–700 developed by the American Society of Civil nm wavebands, stepwise from zero through Engineers (2005) (see Supplement for code). This saturating PPFD using the following increments: model uses day of year, time of day, latitude, 0, 20, 40, 60, 80, 100, 130, 160, 200, 250, 300, 400, longitude, elevation, air temperature, and rela- 800, and 1600. Measurements at each PPFD were tive humidity as input variables and has been logged when gas exchange was stable as indicat-
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ed by: (1) visually stable intracellular CO2 hyperbola), p is the curve convexity parameter, A0 1 2 1 concentration (Ci; lmol CO2 mol air ) and net is the dark respiration rate (lmol CO2 m s ) 2 1 2 1 CO2 assimilation rates (A; lmol CO2 m s ) and Q is the incident PPFD (lmol m s ). In values, (2) a total coefficient of variation (CV) addition, the light compensation point and light 2 1 percentage (calculated as the sum of CO2 and saturation estimate (lmol m s )werecalculat- H2O CV percent) of less than 0.1% and (3) ed as Q value at which A ¼ zero and the linear following a min-max wait time of 3–10 minutes, intersection of [ and A0 with Amax, respectively. respectively. CO2 response curves, CO2 assimila- ACi curves were fit to a biochemical model of tion rates versus the intracellular CO2 concentra- photosynthesis developed by Farquhar et al. tion (ACi ), were collected at saturating PPFD þ (1980) and updated to account for triose-phos- 200 (lmol m 2 s 1) identified by the light re- phate limitation (TPU) as described in Long and sponse curve. Following a five-minute stabiliza- Bernacchi (2003), where net CO2 assimilation (A) tion period at a reference chamber CO2 per area, dependent solely on mesophyll pro- 1 concentration (lmol CO2 mol air) of 100, CO2 cesses, is determined by the minimum of three concentration was increased stepwise through potential limiters: Rubisco activity (Vcmax; Wc), the following increments: 100, 300, 600, 900, 1200, RuBP regeneration (Jmax; Wj) or the regeneration and 1500. Measurements were logged at each and utilization of inorganic triose-phosphate increment using the same criteria as for light (VTPU; Wp). Limitation typically shifts from Wc response curves, but with min-max time adjusted to Wj to Wp with increasing Ci, calculated by: to 3–5 minutes, respectively. Induction response Vcmax 3 Ci curves were collected following a five-minute Wc ¼ O ð7Þ ½Ci þ Kcð1 þ =KoÞ stabilization period at a PPFD of 20. During the last 30 seconds of stabilization, measurements where Vcmax is the maximum rate of carboxyla- 2 1 were logged every two seconds, following which tion by Rubisco (lmol CO2 m s ), Kc and c are PPFD was increased directly to 1300, and logging the Michaelis-Menten constants of Rubisco for continued every two seconds for 3–5 minutes. CO2 and O2, respectively, and O is the stroma O2 Prior to analysis measurements from the light concentration (Pa). and CO response curves were normalized for 2 J 3 Ci differences in leaf temperature to A at 258C Wj ¼ ð8Þ 4:5 3 Ci þ 10:5 3 C through a custom version of the SiB2 photosyn- thesis model (Sellers et al. 1996) coded in IDL where C ¼ 0.5 3 O/s; s is the specificity factor for (Interactive Data Language, ITTVIS, Boulder, Rubisco, and J, the whole chain electron trans- Colorado, USA, 2000–2010) and provided by port rate, is: qffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffi Joseph Berry (Department of Global Ecology, 2 Carnegie Institution for Science, Stanford, Cal- Q2 þ Jmax ðQ2 þ JmaxÞ 4hPSIIQ2Jmax J ¼ ifornia, USA, personal communication). 2hPSII Normalized light (AQ) and CO2 (ACi ) re- ð9Þ sponse curves were fit through non-linear pa- rameterization using the LI-COR Photosynthesis with hPSII ¼ curvature factor, Q2 ¼ incident quanta software (Version 1.0, LI-COR) available online: available to PSII, and: ftp://ftp.licor.com/perm/env/LI-6400/Software/ Q2 ¼ Q } [PSIImaxb ð10Þ analysis_software/Photosynthesis.exe [accessed 1
06/03/2011]. AQ curves were fit to: where }1 ¼ leaf absorptance, [PSII,max ¼ max quantum yield of PSII, and b ¼ fraction absorbed [ 3 Q A ¼ p þ A0 ð6Þ light accessible by PSII. ½1 þ [ 3 Q 1=p Amax 3 3 TPU Wp ¼ ð11Þ C where A (i.e., Aarea) is the net CO2 assimilation 1 2 1 Ci (lmol CO2 m s ) per area, Amax is the maxi- mum rate of A (the asymptote), [ is the apparent where Vo is the rate of oxygenation of Rubisco quantum efficiency (i.e., the initial slope of the fit and TPU is rate of triose phosphate utilization
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