Distribution Patterns of Indigenous Freshwater Fishes in the Tagus
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Cobitis Elongata, Heckel & Kner, 1858
Molekularna ekologija velikog vijuna (Cobitis elongata, Heckel & Kner, 1858) Nemec, Petra Master's thesis / Diplomski rad 2019 Degree Grantor / Ustanova koja je dodijelila akademski / stručni stupanj: University of Zagreb, Faculty of Science / Sveučilište u Zagrebu, Prirodoslovno-matematički fakultet Permanent link / Trajna poveznica: https://urn.nsk.hr/urn:nbn:hr:217:053268 Rights / Prava: In copyright Download date / Datum preuzimanja: 2021-10-02 Repository / Repozitorij: Repository of Faculty of Science - University of Zagreb Sveuĉilište u Zagrebu Prirodoslovno-matematiĉki fakultet Biološki odsjek Petra Nemec MOLEKULARNA EKOLOGIJA VELIKOG VIJUNA (Cobitis elongata Heckel & Kner, 1858) Diplomski rad Zagreb, 2019. Ovaj rad, izraĊen u Zoologijskom zavodu Biološkog odsjeka Prirodoslovno-matematiĉkog fakulteta Sveuĉilišta u Zagrebu, pod vodstvom doc. dr. sc. Ivane Buj, predan je na ocjenu Biološkom odsjeku Prirodoslovno-matematiĉkog fakulteta Sveuĉilišta u Zagrebu radi stjecanja zvanja magistra ekologije i zaštite prirode. Zahvala Zahvaljujem svojoj mentorici doc. dr. sc. Ivani Buj na stručnom vodstvu i prenesenom znanju, usmjeravanju i pomoći, strpljenju te vremenu koje mi je poklonila tijekom izrade ovog diplomskog rada. Hvala što ste vjerovali da ja to mogu! Hvala mojoj obitelji bez koje ovo sve ne bi bilo moguće. Hvala vam svima na velikoj potpori i brizi što ste me bodrili i bili uz mene tijekom mojih uspona, ali i padova. Najveća hvala mami i tati na bezuvjetnoj ljubavi, podršci, a najviše na svim odricanjima i nesebičnom trudu koji su uložili u moje obrazovanje. Zahvaljujem svim svojim prijateljima i kolegama s kojima sam provela najbolje studentske dane. Hvala vam na svakom zajedničkom trenutku, zabavnim druženjima, razgovorima te učenju do dugo u noć. Hvala što ste mi život u drugom gradu učinili ljepšim. -
Karyotype and Chromosomal Characteristics of Rdna of Cobitis
COMPARATIVE A peer-reviewed open-access journal CompCytogen 12(4):Karyotype 483–491 and (2018) chromosomal characteristics of rDNA of Cobitis strumicae... 483 doi: 10.3897/CompCytogen.v12i4.28068 RESEARCH ARTICLE Cytogenetics http://compcytogen.pensoft.net International Journal of Plant & Animal Cytogenetics, Karyosystematics, and Molecular Systematics Karyotype and chromosomal characteristics of rDNA of Cobitis strumicae Karaman, 1955 (Teleostei, Cobitidae) from Lake Volvi, Greece Eva Hnátková1,4, Costas Triantaphyllidis2, Catherine Ozouf-Costaz3, Lukáš Choleva4, Zuzana Majtánová4, Joerg Bohlen4, Petr Ráb4 1 Department of Zoology and Fisheries, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences, 165 00 Prague, Kamýcká 129, Czech Republic 2 Department of Genetics, Development and Molecular Biology, Faculty of Sciences, School of Biology, Aristotle University of Thessaloniki, University Cam- pus, 54124 Thessaloniki, Greece 3 Institut de Biologie Paris Seine, UMR 7138 “Evolution”, Sorbonne Univer- sités, Case 5, 7 quai St Bernard, 75952 Paris cedex 05, Paris, France 4 Laboratory of Fish Genetics, Institute of Animal Physiology and Genetics, Academy of Sciences of Czech Republic, 277 21 Liběchov, Czech Republic Corresponding author: Eva Hnátková ([email protected]) Academic editor: Ekaterina Gornung | Received 29 June 2018 | Accepted 26 September 2018 | Published 16 November 2018 http://zoobank.org/314988CD-B02E-4B38-B88E-CE4E3C56A9EB Citation: Hnátková E, Triantaphyllidis C, Ozouf-Costaz C, Choleva L, -
Phylogenetic Position of the Fish Genus Ellopostoma (Teleostei: Cypriniformes) Using Molecular Genetic Data
157 Ichthyol. Explor. Freshwaters, Vol. 20, No. 2, pp. 157-162, 2 figs., June 2009 © 2009 by Verlag Dr. Friedrich Pfeil, München, Germany – ISSN 0936-9902 Phylogenetic position of the fish genus Ellopostoma (Teleostei: Cypriniformes) using molecular genetic data Jörg Bohlen* and Vendula Šlechtová* We investigated the phylogenetic position of Ellopostoma based on nuclear sequence data (RAG-1 gene). Ellopo- stoma is a member of the superfamily Cobitoidea (loaches) of Cypriniformes, but does not belong to any of the currently recognised families. It represents an independent lineage, recognised as a distinct new family Ellopo- stomatidae, characterized by a squarish and oblique snout, a minute protrusible mouth, a single pair of barbels, large eyes and 35-38 pharyngeal teeth. Introduction middle stretches of the Kapuas River in western Borneo. It is only in 1976 that the species was With about 3800 recognised species, the freshwa- collected again, also in the Kapuas (Roberts, 1989). ter fish order Cypriniformes (Osteichthyes: Tele- Kottelat (1989) recorded the presence of an un- ostei) is one of the largest recognised to date named Ellopostoma from the Malay Peninsula among vertebrates. It is divided into two main [Tapi River, Thailand], later described by Tan & lineages, the superfamilies Cyprinoidea (carps, Lim (2002) as E. mystax. Kottelat & Widjanarti minnows and related fishes) and Cobitoidea (2005) provide additional records of E. megalo- (loaches and related fishes) (Nelson, 2006). With- mycter, also in the Kapuas drainage. in Cobitoidea seven lineages are recognizable Because of its unique morphological features, (called families by e. g., Šlechtová et al., 2007; Chen the phylogenetic position of Ellopostoma has been & Mayden, 2009). -
Descripción De Nuevas Especies Animales De La Península Ibérica E Islas Baleares (1978-1994): Tendencias Taxonómicas Y Listado Sistemático
Graellsia, 53: 111-175 (1997) DESCRIPCIÓN DE NUEVAS ESPECIES ANIMALES DE LA PENÍNSULA IBÉRICA E ISLAS BALEARES (1978-1994): TENDENCIAS TAXONÓMICAS Y LISTADO SISTEMÁTICO M. Esteban (*) y B. Sanchiz (*) RESUMEN Durante el periodo 1978-1994 se han descrito cerca de 2.000 especies animales nue- vas para la ciencia en territorio ibérico-balear. Se presenta como apéndice un listado completo de las especies (1978-1993), ordenadas taxonómicamente, así como de sus referencias bibliográficas. Como tendencias generales en este proceso de inventario de la biodiversidad se aprecia un incremento moderado y sostenido en el número de taxones descritos, junto a una cada vez mayor contribución de los autores españoles. Es cada vez mayor el número de especies publicadas en revistas que aparecen en el Science Citation Index, así como el uso del idioma inglés. La mayoría de los phyla, clases u órdenes mues- tran gran variación en la cantidad de especies descritas cada año, dado el pequeño núme- ro absoluto de publicaciones. Los insectos son claramente el colectivo más estudiado, pero se aprecia una disminución en su importancia relativa, asociada al incremento de estudios en grupos poco conocidos como los nematodos. Palabras clave: Biodiversidad; Taxonomía; Península Ibérica; España; Portugal; Baleares. ABSTRACT Description of new animal species from the Iberian Peninsula and Balearic Islands (1978-1994): Taxonomic trends and systematic list During the period 1978-1994 about 2.000 new animal species have been described in the Iberian Peninsula and the Balearic Islands. A complete list of these new species for 1978-1993, taxonomically arranged, and their bibliographic references is given in an appendix. -
Bivalves Nas Lagoas Costeiras Da Barrinha De Mira, Lagoa De Mira, Lagoa Da Vela E Lagoa Das Braças
Caracterização e proteção das espécies nativas de bivalves nas lagoas costeiras da Barrinha de Mira, Lagoa de Mira, Lagoa da Vela e Lagoa das Braças FICHA TÉCNICA título PAELORIS: Guia de Flora e Fauna aquáticas das Lagoas Costeiras do Sítio Rede Natura 2000: Dunas de Mira, Gândara e Gafanhas (código PTCON0055) autores Simone Varandas; Tiago Assunção; Paulo Almeida; Rui Cortes; António Crespí; Pedro Ferreira; Elsa Froufe; Mariana Hinzmann; Joaquim Jesus; Manuel Lopes-Lima; Marisa Lopes; Marco Magalhães; Vítor Pereira; Cátia Santos; Ronaldo Sousa; Amílcar Tei- xeira edição Instituto Politécnico de Bragança Universidade de Trás-os-Montes e Alto Douro Universidade do Minho Universidade do Porto Câmara Municipal da Figueira da Foz Câmara Municipal de Mira fotografias Adriana Terrível, Amílcar Teixeira, Ana Gonçalves, António Crespí, Carlos Antunes, João Carrola, Luís Quinta, Manuel Lopes-Lima, Nuno Rico, Ronaldo Sousa, Rui Cortes, Simone Varandas, Tiago Assunção ilustrações/esquemas Joana Rodrigues | Emanuel Peres conceção e design gráfico Tiago Assunção | Vítor Pereira design gráfico da capa Marco Custódio e contracapa impressão Nome da empresa tiragem 1000 exemplares d. l. 352…/14 isbn 978-972-745-172-2 citação da obra varandas s., assunção t., almeida p., cortes r., crespí a., ferreira p., froufe e., hinzmann m., jesus j., lopes- lima m., lopes m., magalhães m., pereira v., santos c., sousa r., teixeira a. 2014. PAELORIS: Guia de Flora e Fauna aquáticas das Lagoas Costeiras do Sítio Rede Natura 2000: Dunas de Mira, Gândara e Gafanhas (código -
Cobitis Calderoni Bacescu, 1962
BANCO DE DATOS DE LA NATURALEZA Peces Continentales de España Cobitis calderoni Bacescu, 1962 Nombre vulgar: • Castellano: Lamprehuela • Catalán: Llopet ibèric • Vasco: Mazkar arantzaduna • Portugués: Verdma-do-norte. TAXONOMÍA • Clase: Actinopterygii • Orden: Cypriniformes • Familia: Cobitidae CATEGORÍA MUNDIAL UICN: VU A1ace+2ce CATEGORÍA UICN PROPUESTA: VU A 1ace+2ce JUSTIFICACIÓN DE LOS CRITERIOS. La especie ha desaparecido de la parte media baja de los ríos de las cuencas del Duero y Ebro especialmente en esta última donde su área de ocupación se ha reducido en los últimos años casi en un 50% según observaciones. En España se estima que la especie ha desaparecido en más del 20% del área ocupada en los últimos diez años y sus poblaciones comienzan a estar fragmentadas lo que parece indicar que pueda pasar a la categoría "En Peligro" en los próximos años. El declive es continuado y las principales causas han sido la introducción de especies exóticas y la degradación del hábitat debido al aumento de infraestructuras hidráulicas y de vertidos agrícolas, industriales y urbanos. LEGISLACIÓN AUTONÓMICA. Catalogada de "interés especial" en el registro de la Fauna Silvestre de Vertebrados de Navarra, Orden Foral 0209/1995, de 13 de febrero. Catalogada como "Sensible a la alteración de su hábitat" en el Anejo del catálogo de especies amenazadas de Aragón, decreto 49/1995 de 28 de marzo. Catalogada como "En Peligro de Extinción" en el catálogo regional de especies amenazadas de fauna y flora silvestres de la Comunidad BANCO DE DATOS DE LA NATURALEZA Peces Continentales de España de Madrid, 18/92 del 26 de marzo. -
Phylogenetic Position of the Genus Bibarba As Revealed from Molecular Genetic Data (Teleostei: Cobitidae)
297 Ichthyol. Explor. Freshwaters, Vol. 29, No. 4, pp. 297-304, 5 figs., 1 tab., February 2020 © 2020 by Verlag Dr. Friedrich Pfeil, München, Germany – ISSN 0936-9902 LSID: http://zoobank.org/urn:lsid:zoobank.org:pub:5380FE17-1144-4AD6-A3A1-5762553CC37F DOI: http://doi.org/10.23788/IEF-1099 Published 15 May 2019 Phylogenetic position of the genus Bibarba as revealed from molecular genetic data (Teleostei: Cobitidae) Jörg Bohlen*, Fan Li** and Vendula Šlechtová* Phylogenetically, the family Cobitidae consists of an assemblage of lineages that are referred to as ‘southern line- ages’, out of which stems a monophyletic bunch of lineages that is referred to as ‘Northern clade’. Up to now, 17 of the 21 valid genera have been included into genetic phylogenies. The present phylogenetic study analyses the only two known species of Bibarba using nuclear and mitochondrial DNA sequences. Both species together formed a monophyletic lineage that is sister to the Northern clade of Cobitidae, but well-separated from the four other major lineages within the Northern clade. The results support the validity of the genus and show it to represent a major lineage on its own. The morphological synapomorphy of the northern clade is in the sexual dimorphism, with males bearing an ossified structure (lamina circularis or scale of Canestrini) on the second branched pectoral-fin ray in males. Bibarba was reported to have such structure on the third instead of second fin ray, but our observations reveal the presence of two lamina circularis, one on the second and one on the third fin ray (character doubling). -
Karyological and Molecular Analysis of Three Endemic Loaches (Actinopterygii: Cobitoidea) from Kor River Basin, Iran
Molecular Biology Research Communications 2015;4(1):1-13 MBRC Original Article Open Access Karyological and molecular analysis of three endemic loaches (Actinopterygii: Cobitoidea) from Kor River basin, Iran Hamid Reza Esmaeili1,*, Zeinab Pirvar1, Mehragan Ebrahimi1, Matthias F. Geiger2 1) Department of Biology, College of Sciences, Shiraz University, Shiraz, Iran 2) Zoological Research Museum Alexander Koenig, Leibniz Institute for Animal Biodiversity, Adenauerallee, Germany ABSTRACT This study provides new data on chromosomal characteristics and DNA barcoding of three endemic loaches of Iran: spiny southern loach Cobitis linea (Heckel, 1847), Persian stream loach Oxynoemacheilus persa (Heckel, 1848) and Tongiorgi stream loach Oxynoemacheilus tongiorgii (Nalbant & Bianco, 1998). The chromosomes of these fishes were investigated by examining metaphase chromosome spreads obtained from epithelial gill and kidney cells. The diploid chromosome numbers of all three species were 2n=50. The karyotypes of C. linea consisted of 4M + 40SM + 6ST, NF=94; of O. persa by 20M + 22SM + 8ST, NF=90 and of O. tongiorgii by 18M + 24SM + 8ST, NF= 92. Sex chromosomes were cytologically indistinguishable in these loaches. Maximum likelihood-based estimation of the phylogenetic relationships based on the COI barcode region clearly separates the three Iranian loach species of the Kor River basin. All species distinguished by morphological characters were recovered as monophyletic clades by the COI barcodes. The obtained results could be used for population studies,Archive management and conservatio n programs.of SID Key words: Loaches; Phylogenetic relationships; COI barcode region; Idiogram; Iran INTRODUCTION The confirmed freshwater ichthyofauna of Iran are represented by 202 species in 104 genera, 28 families, 17 orders and 3 classes found in 19 different basins [1]. -
Loaches of the Genus Cobitis and Related Genera Biology, Systematics, Genetics, Distribution, Ecology and Conservation
3rd International Conference Loaches of the Genus Cobitis and Related Genera Biology, Systematics, Genetics, Distribution, Ecology and Conservation Šibenik, Croatia 24–29 September 2006 Organized by Croatia Ichtythyological Society and Department of Zoology, Faculty of Science, University of Zagreb Edited by Stanislav LUSK, Ivana BUJ and Milorad MRAKOVČIĆ 1 PREFACE The biology of loaches (in the broader sense of the term) has already been discussed at three international conferences. After two previous meetings (the first in Brno in 1999 and second in Olsztyn in 2002), the third conference took place in Šibenik, Croatia, in 2006. The continuing interest of the some 50 participants from Europe and Asia suggests that the problem of loaches of the genus Cobitis and related genera is still interesting and attractive. At each Cobitis conference, alongside more experienced scientists that have already accomplished a great deal in revealing the biology of loaches, new, younger researchers were amazed with this group of fish and continue to investigate them. Certainly, one could ask why similar topical activities, such as those pertaining to Chondrostoma, Barbus, or Gobio, ended after one or two meetings. The answer is that the scientific importance of the problem of loaches is distinctly wider, more complex, and far from being exhausted. In Europe, intense investigations into this topic have been underway for not longer than ten years or so, and the application of genetical and karyological methods has induced substantial changes into the previous taxonomy and systematics of the loaches. The polyploidy of some taxa, the atypical reproduction and the ensuing presence of hybrid complexes within the ranges of ‘pure’ species present an interesting and important ‘natural experimental base’. -
Taxonomic Status of the Genus Cobitis Linnaeus, 1758 (Teleostei: Cobitidae) in the Southern Caspian Sea Basin, Iran with Description of a New Species
FishTaxa (2017) 2(1): 48-61 E-ISSN: 2458-942X Journal homepage: www.fishtaxa.com © 2016 FISHTAXA. All rights reserved Taxonomic status of the genus Cobitis Linnaeus, 1758 (Teleostei: Cobitidae) in the southern Caspian Sea basin, Iran with description of a new species Soheil EAGDERI1*, Arash JOULADEH-ROUDBAR1, Pariya JALILI1, Golnaz SAYYADZADEH2, Hamid Reza ESMAEILI2 1Department of Fisheries, Faculty of Natural Resources, University of Tehran, Karaj, Iran. 2Ichthyology and Molecular Systematics Research Laboratory, Department of Biology, College of Sciences, Shiraz University, Shiraz, Iran. Corresponding author: *E-mail: [email protected] Abstract Members of the genus Cobitis in the southern Caspian Sea basin of Iran are found from the Atrak to Aras Rivers. Two species, namely C. keyvani and C. faridpaki had been already described from this distribution range. However, previous study revealed that C. keyvani is a junior synonym of C. faridpaki, therefore populations of the eastern part of the Sefid River are C. faridpaki and those of the western part of this basin represent an undescribed species misidentified as C. keyvani in previous studies. Here we describe and compare it with other species of this genus from Iran based on morphological and molecular (COI barcode region) characters. Keywords: Freshwater fish, Morphology, COI, Spined loach, Sefid River. Zoobank: urn:lsid:zoobank.org:pub:8E2059BD-3345-4FB1-A7D1-12FD62CE01AD urn:lsid:zoobank.org:act:B5BA46A4-6ABE-4392-A558-DA54A08D270A Introduction Members of the genus Cobitis represent one of the most widely distributed Palearctic primary freshwater fishes (Sawada 1982; Coad 2017). They are found in Eurasia and Morocco (North Africa) and Southern Asia (Eschmeyer and Fong 2011). -
Cobitis Vettonica Region: 1 Taxonomic Authority: Doadrio & Perdices, 1997 Synonyms: Common Names
Cobitis vettonica Region: 1 Taxonomic Authority: Doadrio & Perdices, 1997 Synonyms: Common Names: Order: Cypriniformes Family: Cobitidae Notes on taxonomy: General Information Biome Terrestrial Freshwater Marine Geographic Range of species: Habitat and Ecology Information: It is restricted to the Arrago river basin within the Tagus river basin in No data. western Spain. Conservation Measures: Threats: None. Water extraction and pollution, drought. Introduction of exotic fish species. Species population information: Decreasing. Native - Native - Presence Presence Extinct Reintroduced Introduced Vagrant Country Distribution Confirmed Possible SpainCountry: Upper Level Habitat Preferences Score Lower Level Habitat Preferences Score 5.1 Wetlands (inland) - Permanent Rivers/Streams/Creeks 1 (includes waterfalls) 5.2 Wetlands (inland) - Seasonal/Intermittent/Irregular 1 Rivers/Streams/Creeks Major threats Conservation Measures Code Description of threat Past PresentFuture Code Conservation measures In place Needed 1 Habitat Loss/Degradation (human induced) 1 Policy-based actions 1.3 Extraction 1.2 Legislation 1.3.6 Groundwater extraction 1.2.1 Development 2 Invasive alien species (directly affecting the 1.2.1.2 National level species) 1.2.2 Implementation 6 Pollution (affecting habitat and/or species) 1.2.2.2 National level 6.3 Water pollution 3 Research actions 7 Natural disasters 3.1 Taxonomy 7.1 Drought 3.2 Population numbers and range 9 Intrinsic factors 3.3 Biology and Ecology 9.1 Limited dispersal 3.4 Habitat status 9.9 Restricted range -
Cobitis Calderoni Region: 1 Taxonomic Authority: Bacescu, 1962 Synonyms: Common Names
Cobitis calderoni Region: 1 Taxonomic Authority: Bacescu, 1962 Synonyms: Common Names: Order: Cypriniformes Family: Cobitidae Notes on taxonomy: General Information Biome Terrestrial Freshwater Marine Geographic Range of species: Habitat and Ecology Information: It is restricted to the Duero, Ebro and Tajo river basins in Spain and It lives in upper and middle reaches of rivers with shallow waters and Portugal. stony bottom. Conservation Measures: Threats: Listed in the Appendix III of the Bern Convention. Habitat destruction (due to gravel extraction), water pollution and introduction of exotic fish species (e.g. pike in the Duero river). Species population information: Decreasing. Native - Native - Presence Presence Extinct Reintroduced Introduced Vagrant Country Distribution Confirmed Possible PortugalCountry: Country:Spain Upper Level Habitat Preferences Score Lower Level Habitat Preferences Score 5.1 Wetlands (inland) - Permanent Rivers/Streams/Creeks 1 (includes waterfalls) Major threats Conservation Measures Code Description of threat Past PresentFuture Code Conservation measures In place Needed 1 Habitat Loss/Degradation (human induced) 1 Policy-based actions 1.3 Extraction 1.2 Legislation 1.3.6 Groundwater extraction 1.2.1 Development 1.4 Infrastructure development 1.2.1.1 International level 1.4.6 Dams 1.2.1.2 National level 2 Invasive alien species (directly affecting the 1.2.2 Implementation species) 1.2.2.1 International level 6 Pollution (affecting habitat and/or species) 1.2.2.2 National level 6.3 Water pollution 3 Research actions 7 Natural disasters 3.2 Population numbers and range 7.1 Drought 3.3 Biology and Ecology 9 Intrinsic factors 3.4 Habitat status 9.1 Limited dispersal 3.5 Threats 9.9 Restricted range 3.8 Conservation measures 3.9 Trends/Monitoring Utilisation of Species Purpose/Type of Use Subsistence National International Other purpose: Not used at all.