PRNP Polymorphisms in Eight Local Goat Populations/Breeds from Central and Southern Italy
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Keep Garfagnina Alive. an Integrated Study on Patterns of Homozygosity, Genomic
bioRxiv preprint doi: https://doi.org/10.1101/2020.04.16.044644; this version posted April 16, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Keep Garfagnina alive. An integrated study on patterns of homozygosity, genomic 2 inbreeding, admixture and breed traceability of the Italian Garfagnina goat breed. 3 4 5 Christos Dadousis1,*, Francesca Cecchi2, Michela Ablondi1, Maria Chiara Fabbri3, 6 Alessandra Stella4,5, Riccardo Bozzi3 7 8 9 1 Dipartimento di Scienze Medico‐Veterinarie, Università di Parma, Parma, Italy. 10 2 Dipartimento di Scienze Veterinarie, Università di Pisa, Italy. 11 3 Dipartimento di Scienze e Tecnologie Agrarie, Alimentari, Ambientali e Forestali, 12 Università di Firenze, Firenze, 50144, Italy. 13 4 Istituto di Biologia e Biotecnologia Agraria, Consiglio Nazionale delle Ricerche, 14 Milano, Italy. 15 5 Fondazione Parco Tecnologico Padano, Lodi, Italy. 16 17 18 * Corresponding author: 19 Email: [email protected] (CD) 20 ORCID ID: https://orcid.org/0000-0002-7689-6443 21 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.04.16.044644; this version posted April 16, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Abstract 2 The objective of this study was to investigate the genomic background of the 3 Garfagnina (GRF) goat breed that faces the risk of extinction. -
The Climatic and Genetic Heritage of Italian Goat Breeds with Genomic
www.nature.com/scientificreports OPEN The climatic and genetic heritage of Italian goat breeds with genomic SNP data Matteo Cortellari 1,16, Mario Barbato2,16, Andrea Talenti1,3*, Arianna Bionda1, Antonello Carta4, Roberta Ciampolini5, Elena Ciani6, Alessandra Crisà7, Stefano Frattini1, Emiliano Lasagna8, Donata Marletta9, Salvatore Mastrangelo10, Alessio Negro1, Ettore Randi11, Francesca M. Sarti8, Stefano Sartore12, Dominga Soglia12, Luigi Liotta13, Alessandra Stella14, Paolo Ajmone‑Marsan2, Fabio Pilla15, Licia Colli2 & Paola Crepaldi1 Local adaptation of animals to the environment can abruptly become a burden when faced with rapid climatic changes such as those foreseen for the Italian peninsula over the next 70 years. Our study investigates the genetic structure of the Italian goat populations and links it with the environment and how genetics might evolve over the next 50 years. We used one of the largest national datasets including > 1000 goats from 33 populations across the Italian peninsula collected by the Italian Goat Consortium and genotyped with over 50 k markers. Our results showed that Italian goats can be discriminated in three groups refective of the Italian geography and its geo‑political situation preceding the country unifcation around two centuries ago. We leveraged the remarkable genetic and geographical diversity of the Italian goat populations and performed landscape genomics analysis to disentangle the relationship between genotype and environment, fnding 64 SNPs intercepting genomic regions linked to growth, circadian rhythm, fertility, and infammatory response. Lastly, we calculated the hypothetical future genotypic frequencies of the most relevant SNPs identifed through landscape genomics to evaluate their long‑term efect on the genetic structure of the Italian goat populations. -
Local Adaptations of Mediterranean Sheep and Goats Through an Integrative Approach
Supplemental Information for: Local adaptations of Mediterranean sheep and goats through an integrative approach Bruno Serranito 1,2# , Marco Cavalazzi 3# , Pablo Vidal 4, Dominique Taurisson-Mouret 5, Elena Ciani 6, Marie Bal 3, Eric Rouvellac 3, Bertrand Servin 7, Carole Moreno-Romieux 7, Gwenola Tosser-Klopp 7, Stephen J. G. Hall 8, Johannes A. Lenstra 9, François Pompanon 10 , Badr Benjelloun 10,11 , Anne Da Silva 1* #: Serranito B. and Cavalazzi M. should be considered joint first author * Correspondence: [email protected] Table of Contents: Supplementary Table 1. Initial list breeds for the constitution of the datasets. Page 1 Supplementary Figure 1. Synthetic schema of the main steps for the Page 2 proposed approach. Supplementary Figure 2. Goat and sheep cradles description as a function of Pages 3-4 environmental variables: Synthetic descriptions of cradles and some characteristic breed phenotypic traits. Supplementary Table 2. Description of the breeds included in the sheep and Pages 5 -16 goat datasets. Number of individuals considered, country of origin, information on the breed history, geographical definition of the cradle, description of the breed, use and status. Supplementary Figure 3. LD analyses for sheep and goats. Page 17 Supplementary Text 1. Genetic structure assessment: admixture analyses, Pages 18 -20 sNMF cross-entropies and Mantel tests. Supplementary Figure 4 . Mapping display for sheep and goats, of the Pages 21 -22 geographical cradles and the GPS coordinates of the sampled points; statistical comparisons for the variables Annual Mean Temperature, Annual Mean Precipitation and Altitude between the distributions obtained by the cradle method and the GPS area method, display of the results via boxplots. -
Enti Selezionatori Che Tengono Libri Genealogici Per Gli Animali Riproduttori Di Razza Pura
REGOLAMENTO DI ESECUZIONE (UE) 2017/716 DELLA COMMISSIONE del 10 aprile 2017 recante modalità di applicazione del regolamento (UE) 2016/1012 del Parlamento europeo e del Consiglio per quanto riguarda i modelli di formulari da utilizzare per le informazioni da includere negli elenchi degli enti selezionatori e degli enti ibridatori riconosciuti. Gazzetta ufficiale dell’Unione europea L 109/1. DIPEISR - Dipartimento delle politiche europee e internazionali e dello sviluppo rurale DISR - Direzione generale dello sviluppo rurale DISR VII - Produzioni animali Dirigente: dott. Francesco BONGIOVANNI Via XX Settembre, 20 - 00187 Roma Piano 3, Stanza 96 Telefono: +39 06 4665 5096 E-Mail: [email protected] PEC: [email protected] WWW: https://www.politicheagricole.it/ ____________________________________________________________________ Enti selezionatori che tengono libri genealogici per gli animali riproduttori di razza pura Enti ibridatori che tengono registri suini ibridi per i suini ibridi riproduttori 1 REGOLAMENTO DI ESECUZIONE (UE) 2017/716 DELLA COMMISSIONE del 10 aprile 2017 recante modalità di applicazione del regolamento (UE) 2016/1012 del Parlamento europeo e del Consiglio per quanto riguarda i modelli di formulari da utilizzare per le informazioni da includere negli elenchi degli enti selezionatori e degli enti ibridatori riconosciuti. Gazzetta ufficiale dell’Unione europea L 109/1. I. Enti selezionatori che tengono libri genealogici per gli animali riproduttori di razza pura a) Animali riproduttori di razza -
Xxiii Congresso Nazionale
S.I.P.A.O.C. Società Italiana di Patologia ed Allevamento degli Ovini e dei Caprini Società Italiana di Patologia ed Allevamento degli Ovini e dei Caprini XXIII CONGRESSO NAZIONALE Centro Congressi Federico II Napoli 12-14 settembre 2018 Istituto Zooprofilattico Sperimentale del Mezzogiorno Università degli Studi di Napoli Federico II EDITORIAL BOARD Aniello Anastasio (UNINA) Francesco Lamagna (UNINA) Luigi Avallane (UNINA) Maria Teresa Manfredi (UNIMI) Stefano Biffani (AIA) Nicola Mirabella (UNINA) Pio Leonardo Mario Bitti (AIA) Giuseppe Moniello (UNISS) Giuseppe Campanile (UNINA) Valeria Maria Morittu (UNICZ) Santo Caracappa (IZSPA) Riccardo Negrini (AIA) Stefania Carpino (ICQRF-MIPAF - Lab Perugia) Gaetano Oliva (UNINA) Biagina Chiofalo (UNIME) Giulio Pagnacco (UNIMI) Vincenzo Chiofalo (UNIME) Ugo Pagnini (UNINA) Salvatore Claps (CREA) Serenella Papparella (UNINA) Natascia Cocchia (UNINA) Laura Rinaldi (UNINA) Paolo De Girolamo (UNINA) Remo Rosati (IZSLTI Giovanni Filippini (IZSUM) Luca Rossi (UNITO) Salvatore Florio (UNINA) Antonio Scala (UNISS) Giovanna Fusco (IZSM) Lucia Sepe (CREA) Annunziata Giangaspero (UNIFG) Massimo Trabalza Marinucci (UNIPG) Giuseppe Iovane (UNINA) Fabrizia Veronesi (UNIPG) 2 4 Società Italiana di Patologia ed Allevamento degli Ovini e dei Caprini XXIII Congresso Nazionale Centro Congressi Federico II Napoli 12-14 settembre 2018 Edited by Antonio Bosco Nadia Musco Maria Paola Maurelli Federico Infascelli Series Editor - Giuseppe Cringoli mappe parassitologiche Serie Editoriale Mappe Parassitologiche Series -
Dear Author, Here Are the Proofs of Your Article. • You Can Submit Your
Dear Author, Here are the proofs of your article. • You can submit your corrections online, via e-mail or by fax. • For online submission please insert your corrections in the online correction form. Always indicate the line number to which the correction refers. • You can also insert your corrections in the proof PDF and email the annotated PDF. • For fax submission, please ensure that your corrections are clearly legible. Use a fine black pen and write the correction in the margin, not too close to the edge of the page. • Remember to note the journal title, article number, and your name when sending your response via e-mail or fax. • Check the metadata sheet to make sure that the header information, especially author names and the corresponding affiliations are correctly shown. • Check the questions that may have arisen during copy editing and insert your answers/ corrections. • Check that the text is complete and that all figures, tables and their legends are included. Also check the accuracy of special characters, equations, and electronic supplementary material if applicable. If necessary refer to the Edited manuscript. • The publication of inaccurate data such as dosages and units can have serious consequences. Please take particular care that all such details are correct. • Please do not make changes that involve only matters of style. We have generally introduced forms that follow the journal’s style. Substantial changes in content, e.g., new results, corrected values, title and authorship are not allowed without the approval of the responsible editor. In such a case, please contact the Editorial Office and return his/her consent together with the proof. -
S12711-018-0421-Y.Pdf
Bertolini et al. Genet Sel Evol (2018) 50:57 https://doi.org/10.1186/s12711-018-0421-y Genetics Selection Evolution RESEARCH ARTICLE Open Access Signatures of selection and environmental adaptation across the goat genome post‑domestication Francesca Bertolini1,2* , Bertrand Servin3, Andrea Talenti4, Estelle Rochat5, Eui Soo Kim6, Claire Oget3, Isabelle Palhière3, Alessandra Crisà7, Gennaro Catillo7, Roberto Steri7, Marcel Amills8, Licia Colli9,10, Gabriele Marras11, Marco Milanesi9,12, Ezequiel Nicolazzi11, Benjamin D. Rosen13, Curtis P. Van Tassell13, Bernt Guldbrandtsen14, Tad S. Sonstegard6, Gwenola Tosser‑Klopp3, Alessandra Stella10, Max F. Rothschild1, Stéphane Joost5, Paola Crepaldi4 and the AdaptMap consortium Abstract Background: Since goat was domesticated 10,000 years ago, many factors have contributed to the diferentiation of goat breeds and these are classifed mainly into two types: (i) adaptation to diferent breeding systems and/or purposes and (ii) adaptation to diferent environments. As a result, approximately 600 goat breeds have developed worldwide; they difer considerably from one another in terms of phenotypic characteristics and are adapted to a wide range of climatic conditions. In this work, we analyzed the AdaptMap goat dataset, which is composed of data from more than 3000 animals collected worldwide and genotyped with the CaprineSNP50 BeadChip. These animals were partitioned into groups based on geographical area, production uses, available records on solid coat color and environmental variables including the sampling geographical coordinates, to investigate the role of natural and/or artifcial selection in shaping the genome of goat breeds. Results: Several signatures of selection on diferent chromosomal regions were detected across the diferent breeds, sub-geographical clusters, phenotypic and climatic groups. -
Goat Performance Recording Working Group
GOAT PERFORMANCE RECORDING WORKING GROUP Berlin, 20th May 2014 GOAT PERFORMANCE RECORDING WORKING GROUP MEMBERS . Jean-Michel Astruc, INRA Toulouse, France . Joanne Conington, Scottish Agricultural College, UK . Silverio Grande, Italian Breeders' Association, Italy . Drago Kompan, University of Ljubljana, Slovenia . Pierre van Rooyen, SA Stud Book and Livestock Improvement Association, South Africa . Juan Manuel Serradilla Manrique, University of Cordoba, Spain . Zdravko Barac, Croatian Agricultural Agency, Croatia, chairman ICAR 39th Biennial Session 2014. Berlin, Germany 19-23 May 2014 Joint meeting of the ICAR WG on sheep and goats Joint meeting of the ICAR WG on sheep and goats in Berlin Agenda 1. Opening and welcome 2. Constitution of the groups 3. Changes in the guidelines – General features (with Brian Wickham) – Dairy sheep (more in details … new version to be agreed at the General Assembly in Berlin) – Goats (more in details) 4. Presentation of the results of the on-line enquiry – Goats – Dairy sheep 5. Milk recording devices – a. Survey on on-farm electronic recording devices – b. Utilization of electronic recording devices for milk recording 6. Addition to the agenda 7. Date of next meeting 8. Closure ICAR 39th Biennial Session 2014. Berlin, Germany 19-23 May 2014 Joint meeting of the ICAR WG on sheep and goats Joint meeting of the ICAR WG on sheep and goats in Berlin Agenda The main topics of the agenda were the changes in the guidelines for both species, the presentation of the results of the on line enquiries in dairy sheep and goats ↓ Harmonization of the Guidelines for goat milk recording Report on goat milk recording – results from the on-line data base ICAR 39th Biennial Session 2014. -
Genetic Diversity of Italian Goat Breeds Assessed with a Medium-Density SNP Chip
Genetic diversity of Italian goat breeds assessed with a medium-density SNP chip Letizia Nicoloso *,$,1 , Lorenzo Bomba $,2 , Licia Colli $,2 , Riccardo Negrini 2,3 , Marco Milanesi 2, Raffaele Mazza 4, Tiziana Sechi 5, Stefano Frattini 1, Andrea Talenti 1, Beatrice Coizet 1, Stefania Chessa 6, Donata Marletta 7, Mariasilvia D’Andrea 8, Salvatore Bordonaro 7, Grazyna Ptak 9, Antonello Carta 5, Giulio Pagnacco 1, Alessio Valentini 10, Fabio Pilla 8, Paolo Ajmone-Marsan 2, Paola Crepaldi 1, and the Italian Goat Consortium 11 1Università degli Studi di Milano, DIVET, via Celoria 10, 20133, Milano, Italy 2Università Cattolica del Sacro Cuore, Istituto di Zootecnica, via Emilia Parmense, 84, 29122, Piacenza, Italy 3Associazione Nazionale della Pastorizia, via Palmiro Togliatti 1587, 00155 Rome, Italy 4Laboratorio Genetica e Servizi (LGS) - Associazione Italiana Allevatori (AIA), via Bergamo, 292, 26100 Cremona, Italy 5Unità di Ricerca di Genetica e Biotecnologie, Agris Sardegna, Sassari, Italy 6CNR – IBBA, UOS di Lodi, via Einstein, Località Cascina Codazza, 26900 Lodi, Italy 7Università degli Studi di Catania, Dipartimento di Agricoltura, Alimentazione e Ambiente Di3A, via Valdisavoia 5, 95123 Catania, Italy 8Università degli Studi del Molise, Dipartimento Agricoltura, Ambiente e Alimenti, via Francesco De Sanctis s.n.c., 86100 Campobasso, Italy 9Università di Teramo, Dipartimento Scienze Biomediche Comparate, Piazza Aldo Moro 45, Teramo, Italy 10Dipartimento per l’Innovazione nei sistemi Biologici, Agroalimentari e Forestali, Università della -
Country Report Italy 2011
European Regional Focal Point for Animal Genetic Resources (ERFP) 21 st April 2011 ERFP Country report 2010 – 2011 COUNTRY: ITALY reported by: Giovanni Bittante Strategic Priority Area 1: Characterization, Inventory and Monitoring of Trends and Associated Risks The inventory of Italian animal genetic resources and the monitoring of trends and associated risks has been undertaken and summarized il the paper "Italian animal genetic resources in the Domestic Animal Diversity Information Systm of FAO" (Giovanni Bittante, 2011, Italian Journal of Animal Science,vol 10:e29, Annex 2). Several research activities on this topic have been carried out by Universities and Research Institutions. Among them see the important activity of ConSDABI (Annex 3). Strategic Priority Area 2: Sustainable Use and Development Beyond the systematic control of animals of Italian populations (herd books, pedigree registries, milk recording, type evaluation, etc.) made by the different associations of breeders, as outlined in Annex 2, several projects dealing with sustainable use, products valorisation and development has been carried out by national and local governments, agencies, breeders associations and consortia. Strategic Priority Area 3: Conservation (please give details for the most relevant institutions for national genebanks / cryopreservation in the table in Annex 1) In situ conservation activities are going on for almost all the Italian AnGR, while the project of a national virtual cryo-bank is not yet fully established, despite the intense work of the -
Anagrafe Nazionale Della Biodiversità Di Interesse Agricolo E Alimentare Legge 1° Dicembre 2015, N
Allegato 1 ANAGRAFE NAZIONALE DELLA BIODIVERSITÀ DI INTERESSE AGRICOLO E ALIMENTARE LEGGE 1° DICEMBRE 2015, N. 194 RISORSE GENETICHE ANIMALI Specie n. Genere Nome della razza Nome scientifico Nome comune 1 Bos Bos Taurus L. Bovino Agerolese 2 Bos Bos Taurus L. Bovino Bruna Originaria 3 Bos Bos Taurus L. Bovino Burlina 4 Bos Bos Taurus L. Bovino Cabannina 5 Bos Bos Taurus L. Bovino Calvana 6 Bos Bos Taurus L. Bovino Cinisara 7 Bos Bos Taurus L. Bovino Garfagnina 8 Bos Bos Taurus L. Bovino Jersey 9 Bos Bos Taurus L. Bovino Maremmana 10 Bos Bos Taurus L. Bovino Modenese - Bianca Val Padana 11 Bos Bos Taurus L. Bovino Modicana - Siciliana 12 Bos Bos Taurus L. Bovino Mucca Pisana - Mucco Pisana - Pisana 13 Bos Bos Taurus L. Bovino Pezzata Rossa d'Oropa 14 Bos Bos Taurus L. Bovino Pezzata Rossa Friulana 15 Bos Bos Taurus L. Bovino Pinzgauer 16 Bos Bos Taurus L. Bovino Pontremolese 17 Bos Bos Taurus L. Bovino Pustertaler Sprinzen - Pusterer Sprinzen - Barà 18 Bos Bos Taurus L. Bovino Reggiana (Vacca rossa) 19 Bos Bos Taurus L. Bovino Rendena 20 Bos Bos Taurus L. Bovino Romagnola 21 Bos Bos Taurus L. Bovino Sardo Modicana 22 Bos Bos Taurus L. Bovino Valdostana Pezzata Nera -Castana 23 Bos Bos Taurus L. Bovino Varzese - Ottonese - Tortolese 24 Ovis Ovis aries L. Pecora Alpagota 25 Ovis Ovis aries L. Pecora Altamurana 26 Ovis Ovis aries L. Pecora Appeninica 27 Ovis Ovis aries L. Pecora Assaf 28 Ovis Ovis aries L. Pecora Barbaresca 29 Ovis Ovis aries L. Pecora Bergamasca 30 Ovis Ovis aries L. -
Palermo Baluardo Del Cibo Di Strada Razza E
dal mondo dei formaggi 6 1 0 2 o n n a 2 16 ° In GIUGNO 2016 n O euro 7 E N Magazine di cultura casearia ISSN 2281-5120 U C / orma O orma N f % f 0 7 - e l a t s o P o t n e m a n o b b A n i e Ragusano, sugli Iblei n o i z i d una storia meravigliosa e p S - . A . p . S e n a i l a t I e t s o P Aggiornamento Onaf: parola agli esperti In Olanda ne fanno di tutti i colori PPaalleerrmmoo bbaalluuaarrddoo ddeell cciibboo ddii ssttrraaddaa La Terra dei Fuochi: RRaazzzzaa ee DDoopp:: ll’’uunniioonnee ffeelliiccee intervista a Fagnano ORGANO DI INFORMAZIONE DELLA ORGANIZZAZIONE NAZIONALE ASSAGGIATORI DI FORMAGGI L’Area megalitica di Saint-Martin-de-Corléans di Aosta L’EDITORIALE dal 25 giugno 2016 arrichisce l’offerta culturale e turistica della Valle d’Aosta. Dai corsi ai concorsi alle manifestazioni va messo in atto un metodo comportamentale curato nei minimi particolari di PIER CARLO ADAMI Presidente Onaf Attrazione fatale volte sorge spontanea la domanda di favore di una visione aperta al momento noi cultori del formaggio: e se fossi - attuale. Ciò richiede un adeguato bagaglio Amo ogni tanto un po’ più attraenti? Il di competenza, rigore, attenzione e un’am - pensiero va immediatamente ai nostri amici pia apertura mentale che sono senz’altro sommelier dell’ Ais che in quanto a immagi - doti dell’Onaf. ne (e professionalità) sono sicuramente ai La valorizzazione e la tutela del formaggio, vertici della piramide.