Decrease in 5'-Nucleotidase Activity in Malignant Transformed and Normal Stimulated Cells
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PFK-2/Fbpase-2: Maker and Breaker of the Essential Biofactor Fructose-2, 6-Bisphosphate
30 Review TRENDS in Biochemical Sciences Vol.26 No.1 January 2001 PFK-2/FBPase-2: maker and breaker of the essential biofactor fructose-2, 6-bisphosphate DavidA. Okar, Ànna Manzano,Aurèa Navarro-Sabatè, Lluìs Riera, Ramon Bartrons and Alex J. Lange Fructose-2,6-bisphosphate is responsible for mediating glucagon-stimulated extraction in base led to the discovery of F-2,6-P2 and gluconeogenesis in the liver.This discovery has led to the realization that this the realization that it was either formed or destroyed compound plays a significant role in directing carbohydrate fluxes in all during metabolic transitions where its concentration eukaryotes. Biophysical studies of the enzyme that both synthesizes and determined changes in glycolytic and gluconeogenic degrades this biofactor have yielded insight into its molecular enzymology. carbon flux in the liver. Interest in this compound grew Moreover, the metabolic role of fructose-2,6-bisphosphate has great potential rapidly because it was found to be a most potent in the treatment of diabetes. positive allosteric effector of 6-phosphofructo-1- kinase (PFK-1; EC 2.7.1.11) and an inhibitor of A trail that began with the discovery of a highly potent fructose-1,6-bisphosphatase (FBPase-1; EC 3.1.3.11). regulator of mammalian hepatic carbohydrate Because of its antagonistic actions on these enzymes, metabolism, fructose-2,6-bisphosphate (F-2,6-P2), led F-2,6-P2 plays a crucial role in the control of the to the discovery of the bifunctional enzyme opposing hepatic glycolytic and gluconeogenic 6-phosphofructo-2-kinase/fructose- pathways1–4 (Fig. -
Structural Study of the Acid Sphingomyelinase Protein Family
Structural Study of the Acid Sphingomyelinase Protein Family Alexei Gorelik Department of Biochemistry McGill University, Montreal August 2017 A thesis submitted to McGill University in partial fulfillment of the requirements of the degree of Doctor of Philosophy © Alexei Gorelik, 2017 Abstract The acid sphingomyelinase (ASMase) converts the lipid sphingomyelin (SM) to ceramide. This protein participates in lysosomal lipid metabolism and plays an additional role in signal transduction at the cell surface by cleaving the abundant SM to ceramide, thus modulating membrane properties. These functions are enabled by the enzyme’s lipid- and membrane- interacting saposin domain. ASMase is part of a small family along with the poorly characterized ASMase-like phosphodiesterases 3A and 3B (SMPDL3A,B). SMPDL3A does not hydrolyze SM but degrades extracellular nucleotides, and is potentially involved in purinergic signaling. SMPDL3B is a regulator of the innate immune response and podocyte function, and displays a partially defined lipid- and membrane-modifying activity. I carried out structural studies to gain insight into substrate recognition and molecular functions of the ASMase family of proteins. Crystal structures of SMPDL3A uncovered the helical fold of a novel C-terminal subdomain, a slightly distinct catalytic mechanism, and a nucleotide-binding mode without specific contacts to their nucleoside moiety. The ASMase investigation revealed a conformational flexibility of its saposin domain: this module can switch from a detached, closed conformation to an open form which establishes a hydrophobic interface to the catalytic domain. This open configuration represents the active form of the enzyme, likely allowing lipid access to the active site. The SMPDL3B structure showed a narrow, boot-shaped substrate binding site that accommodates the head group of SM. -
The Role of Triacylglycerol in Plant Stress Response
plants Review The Role of Triacylglycerol in Plant Stress Response Junhao Lu 1, Yang Xu 1, Juli Wang 1, Stacy D. Singer 2,* and Guanqun Chen 1,* 1 Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, T6G 2P5 Alberta, Canada; [email protected] (J.L.); [email protected] (Y.X.); [email protected] (J.W.) 2 Agriculture and Agri-Food Canada, Lethbridge Research and Development Centre, Lethbridge, T1J 4B1 Alberta, Canada * Correspondence: [email protected] (S.D.S.); [email protected] (G.C.); Tel.: +1-403-317-3386 (S.D.S.); +1-780-492-3148 (G.C.) Received: 4 March 2020; Accepted: 2 April 2020; Published: 8 April 2020 Abstract: Vegetable oil is mainly composed of triacylglycerol (TAG), a storage lipid that serves as a major commodity for food and industrial purposes, as well as an alternative biofuel source. While TAG is typically not produced at significant levels in vegetative tissues, emerging evidence suggests that its accumulation in such tissues may provide one mechanism by which plants cope with abiotic stress. Different types of abiotic stress induce lipid remodeling through the action of specific lipases, which results in various alterations in membrane lipid composition. This response induces the formation of toxic lipid intermediates that cause membrane damage or cell death. However, increased levels of TAG under stress conditions are believed to function, at least in part, as a means of sequestering these toxic lipid intermediates. Moreover, the lipid droplets (LDs) in which TAG is enclosed also function as a subcellular factory to provide binding sites and substrates for the biosynthesis of bioactive compounds that protect against insects and fungi. -
The Crystal Structure of the Bifunctional Enzyme 6-Phosphofructo-2-Kinase
Research Article 1017 The crystal structure of the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase reveals distinct domain homologies Charles A Hasemann†*, Eva S Istvan1, Kosaku Uyeda1,2 and Johann Deisenhofer1,3 Background: Glucose homeostasis is maintained by the processes of Addresses: 1Department of Biochemistry, glycolysis and gluconeogenesis. The importance of these pathways is University of Texas Southwestern Medical Center, demonstrated by the severe and life threatening effects observed in various 5323 Harry Hines Blvd., Dallas, TX 75235 USA, 2Research Service, Department of Veterans Affairs forms of diabetes. The bifunctional enzyme 6-phosphofructo-2-kinase/fructose- Medical Center, 4500 S. Lancaster Rd., Dallas, 2,6-bisphosphatase catalyzes both the synthesis and degradation of fructose- TX, 75216 USA and 3Howard Hughes Medical 2,6-bisphosphate, a potent regulator of glycolysis. Thus this bifunctional enzyme Institute, University of Texas, Southwestern plays an indirect yet key role in the regulation of glucose metabolism. Medical Center, 5323 Harry Hines Blvd., Dallas, TX 75235, USA. Results: We have determined the 2.0 Å crystal structure of the rat testis †Present address: Department of Internal isozyme of this bifunctional enzyme. The enzyme is a homodimer of 55 kDa Medicine, Division of Rheumatology, and the subunits arranged in a head-to-head fashion, with each monomer consisting of Harold C Simmons Center for Arthritis Research, University of Texas Southwestern Medical Center, independent kinase and phosphatase domains. The location of ATPgS and 5323 Harry Hines Blvd., Dallas, TX 75235-8884, inorganic phosphate in the kinase and phosphatase domains, respectively, allow USA. us to locate and describe the active sites of both domains. -
Generate Metabolic Map Poster
Authors: Pallavi Subhraveti Ron Caspi Peter Midford Peter D Karp An online version of this diagram is available at BioCyc.org. Biosynthetic pathways are positioned in the left of the cytoplasm, degradative pathways on the right, and reactions not assigned to any pathway are in the far right of the cytoplasm. Transporters and membrane proteins are shown on the membrane. Ingrid Keseler Periplasmic (where appropriate) and extracellular reactions and proteins may also be shown. Pathways are colored according to their cellular function. Gcf_003855395Cyc: Shewanella livingstonensis LMG 19866 Cellular Overview Connections between pathways are omitted for legibility. -
Genomics of Inherited Bone Marrow Failure and Myelodysplasia Michael
Genomics of inherited bone marrow failure and myelodysplasia Michael Yu Zhang A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy University of Washington 2015 Reading Committee: Mary-Claire King, Chair Akiko Shimamura Marshall Horwitz Program Authorized to Offer Degree: Molecular and Cellular Biology 1 ©Copyright 2015 Michael Yu Zhang 2 University of Washington ABSTRACT Genomics of inherited bone marrow failure and myelodysplasia Michael Yu Zhang Chair of the Supervisory Committee: Professor Mary-Claire King Department of Medicine (Medical Genetics) and Genome Sciences Bone marrow failure and myelodysplastic syndromes (BMF/MDS) are disorders of impaired blood cell production with increased leukemia risk. BMF/MDS may be acquired or inherited, a distinction critical for treatment selection. Currently, diagnosis of these inherited syndromes is based on clinical history, family history, and laboratory studies, which directs the ordering of genetic tests on a gene-by-gene basis. However, despite extensive clinical workup and serial genetic testing, many cases remain unexplained. We sought to define the genetic etiology and pathophysiology of unclassified bone marrow failure and myelodysplastic syndromes. First, to determine the extent to which patients remained undiagnosed due to atypical or cryptic presentations of known inherited BMF/MDS, we developed a massively-parallel, next- generation DNA sequencing assay to simultaneously screen for mutations in 85 BMF/MDS genes. Querying 71 pediatric and adult patients with unclassified BMF/MDS using this assay revealed 8 (11%) patients with constitutional, pathogenic mutations in GATA2 , RUNX1 , DKC1 , or LIG4 . All eight patients lacked classic features or laboratory findings for their syndromes. -
The Clinical Biochemistry of 5'-Nucleotidase*
ANNALS OF CLINICAL AND LABORATORY SCIENCE, Vol. 20, No. 2 Copyright © 1990, Institute for Clinical Science, Inc. The Clinical Biochemistry of 5'-Nucleotidase* F. WILLIAM SUNDERMAN JR., M.D. Departments of Laboratory Medicine and Pharmacology, University of Connecticut Medical School, Farmington, CT 06032 ABSTRACT This review delineates the subcellular distribution, biochemical charac teristics, and metabolic functions of 5'-nucleotidase (5'NT), summarizes the analytical biochemistry of 5'NT, and assesses the clinical significance of5'NT determinations in body fluids, cells, and tissues. Salient aspects of the clinical biochemistry of 5'NT, discussed herein, are as follows: (A) Serum 5'NT activity is generally elevated in hepatobiliary diseases, espe cially with intrahepatic obstruction, but, unlike serum alkaline phospha tase, serum 5'NT activity is not increased in infancy, childhood, preg nancy, or osteoblastic disorders. (B) In cancer patients, elevated serum 5'NT activity does not always indicate hepatobiliary involvement; in some cases, 5'NT may be released into serum from the primary tumor or local metastases. (C) Genetic deficiency of erythrocyte pyrimidine 5'NT activity is a common cause of hereditary non-spherocytic hemolytic anemia. (D) Acquired deficiency of erythrocyte pyrimidine 5'NT activity occurs in patients with P-thalassemia and lead poisoning. (E) 5'NT activity is low in circulating monocytes, increases markedly upon their differentiation to tissue macrophages, and subsequently diminishes during macrophage activation. (F) Lymphocyte ecto-5'NT activity, a plasma membrane marker of cell maturation, is generally low in immunodeficiency states, and undergoes characteristic changes in patients with certain lymphomas and leukemias. Introduction ribonucleosides and inorganic phos phate. -
Poly (I)-Poly (C)/Oligo (Dt)-Cellulosei... Sidney Pestka, James Mcinnes
Contents Vol. 72, No. 10 October 1975 INFORMATION TO CONTRIBUTORS ..............................iv...........................I..................... i-i AUTfHOR INDEX ................................................................................................. 4190 Physical Sciences APPLIED Adiabatic evolution of plasma equilibrium (bifurcation/isolation/weak solution/generalized differential MATHEMATICS equation/Tokamak) ............................................ H. Grad, P.N. Hu, and D. C. Stevens 3789-3793 CHEMISTRY Theoretical studies of metal-phosphate interactions: Interaction of Li+, Na+, K+, Be++, Mg++, and Ca++ with H2PO4- and (CH30)2PO2-: Implications for nucleic acid solvation (metal binding/phos- phate complexes/molecular orbital theory) ................Dennis S. Marynick and Henry F. Schaefer III 3794-3798 Maximum-valence radii of transition metals (covalent radii/enneacovalence) ............... Linus Pauling 3799-3801 Model of protein folding: Inclusion of short-, medium-, and long-range interactions (mechanism offolding/ contact free energies/range of interactions/Monte Carlo) ........... Seiji Tanaka and HaroldA. Scheraga 3802-3806 Matrix method for fhActuations and noise in kinetic systems (cross correlation function/noise power spectrum matrix/relaxation matrix/biochemical reaction kinetics/muscle contraction) .Yi-der Chen 3807-3811 MATHEMATICS Point estimates for probability moments (approximate methods/finite differences/numerical methods/prob- abilities) .......................... - ;Emilio Rosenblueth 3812-3814 -
Phosphodiesterases Expression During Murine Cardiac Development
International Journal of Molecular Sciences Article Phosphodiesterases Expression during Murine Cardiac Development Thays Maria da Conceição Silva Carvalho 1,†, Silvia Cardarelli 1,†, Mauro Giorgi 2, Andrea Lenzi 3, Andrea M. Isidori 3 and Fabio Naro 1,* 1 Department of Anatomical, Histological, Forensic and Orthopedic Sciences, Sapienza University, 00161 Rome, Italy; [email protected] (T.M.d.C.S.C.); [email protected] (S.C.) 2 Department of Biology and Biotechnology “C. Darwin”, Sapienza University, 00185 Rome, Italy; [email protected] 3 Department of Experimental Medicine, Sapienza University, 00161 Rome, Italy; [email protected] (A.L.); [email protected] (A.M.I.) * Correspondence: [email protected] † These authors contributed equally to this work. Abstract: 30-50 cyclic nucleotide phosphodiesterases (PDEs) are a large family of enzymes playing a fundamental role in the control of intracellular levels of cAMP and cGMP. Emerging evidence suggested an important role of phosphodiesterases in heart formation, but little is known about the expression of phosphodiesterases during cardiac development. In the present study, the pattern of expression and enzymatic activity of phosphodiesterases was investigated at different stages of heart formation. C57BL/6 mice were mated and embryos were collected from 14.5 to 18.5 days of development. Data obtained by qRT-PCR and Western blot analysis showed that seven different isoforms are expressed during heart development, and PDE1C, PDE2A, PDE4D, PDE5A and PDE8A Citation: Carvalho, T.M.d.C.S.; are modulated from E14.5 to E18.5. In heart homogenates, the total cAMP and cGMP hydrolytic Cardarelli, S.; Giorgi, M.; Lenzi, A.; activity is constant at the evaluated times, and PDE4 accounts for the majority of the cAMP hydrolyz- Isidori, A.M.; Naro, F. -
Oxidative Stress Responses in Escherichia Coli and Salmonella Typhimurium
MICROBIOLOGICAL REVIEWS, Dec. 1991, p. 561-585 Vol. 55, No. 4 0146-07 49/91/040561-25$02. 00/0 Copyright © 1991, American Society for Microbiology Oxidative Stress Responses in Escherichia coli and Salmonella typhimurium SPENCER B. FARR1* AND TOKIO KOGOMA2 Department of Molecular and Cellular Toxicology, Harvard School of Public Health, Boston, Massachusetts 02115, 1 and Departments ofCell Biology and Microbiology, University of New Mexico Medical Center, Albuquerque, New Mexico 87131 2 INTRODUCTION AND SCOPE OF REVIEW ............................................................................ 561 OXIDATIVE STRESS RESPONSES .........................................................................................562 Active Oxygen Species ......................................................................................................... 562 Reactivities .....••••.•.......................•............................•.........•.......................................... 562 Sources ......................................•................•.......•.•.•..................................••...••....•.......563 Oxidative Stress and Cellular Responses .........................................................•.......•..•••••....•...563 Peroxide stress response •................•.......•.............................................................•...........564 Su peroxide stress response ...............•..........•.•........•....••....••.....................••.•••••...••.•..•..•..•.564 The two oxidative stress responses are distinct .......................................................................564 -
Pectinesterase, Polygalacturonase
HORTSCIENCE 27(8):900-902. 1992. of 8.2% SSC from the Dept. of Scientific and Industrial Research (DSIR) Research Orchard at Te Puke, New Zealand, then Pectinesterase, Polygalacturonase, and treated within 6 h with ethylene (16 h, 1000 µl·liter-1, 20C) and ripened at 20C in trays b -galactosidase during Softening of provided with polyethylene liners. Samples were taken before ethylene treatment and at Ethylene-treated Kiwifruit 1, 2, and 5 days after treatment. As the 1988 fruit were already quite soft at the time of Teresa F. Wegrzyn and Elspeth A. MacRae the first sampling, ethylene dosage and sam- Department of Scientific and Industrial Research, Fruit and Trees, pling times were altered for the following Private Bag, Auckland I, New Zealand season. In 1989, fruit from the DSIR Re- search Orchard at Kumeu, New Zealand, was Additional index words. ethylene, fruit softening, cell wall, Actinidia deliciosa harvested at 7.2% SSC, then treated and rip ened as for 1988 fruit, except that ethylene Abstract. The activities of several cell wall-associated enzymes of the outer pericarp treatment was for 18 h at 100 µl·liter-1, and were assayed during softening of kiwifruit [Actinidia deliciosa (A. Chev.) C.F. Liang fruit samples were also taken immediately et A.R. Ferguson var. deliciosa cv. Hayward] treated with ethylene. The activity of after ethylene treatment and at 10 days after polygalacturonase (EC 3.2.1.15) increased slightly during fruit softening, while b- harvest. galactosidase (EC 3.2.1.23) activity remained constant. Salt-extracted pectinesterase (EC 3.1.1.11) activity increased during ethylene treatment, then dropped rapidly to In both years, five replicates were made low levels as fruit softened. -
Bkca-Mediated PDE Regulation of Artery Tone
BKCa-mediated PDE regulation of artery tone Contribution of BKCa channels to vascular tone regulation by PDE3 and PDE4 is lost in heart failure Sarah Idres, Germain Perrin, Valérie Domergue, Florence Lefebvre, Susana Gomez, Audrey Varin, Rodolphe Fischmeister, Véronique Leblais, Boris Manoury To cite this version: Sarah Idres, Germain Perrin, Valérie Domergue, Florence Lefebvre, Susana Gomez, et al.. BKCa- mediated PDE regulation of artery tone Contribution of BKCa channels to vascular tone regulation by PDE3 and PDE4 is lost in heart failure. Cardiovascular Research, Oxford University Press (OUP), 2019, 115 (1), pp.130-144. 10.1093/cvr/cvy161. hal-02463726 HAL Id: hal-02463726 https://hal.archives-ouvertes.fr/hal-02463726 Submitted on 1 Feb 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Manuscript Idres et al., BKCa-mediated PDE regulation of artery tone MS # CVR-2017-669 Contribution of BKCa channels to vascular tone regulation by PDE3 and PDE4 is lost in heart failure Sarah Idres1, Germain Perrin1, Valérie Domergue2, Florence Lefebvre1, Susana Gomez1, Audrey Varin1, Rodolphe Fischmeister1, Véronique Leblais1 and Boris Manoury1. 1 Signalling and cardiovascular pathophysiology - UMR-S 1180, Univ. Paris-Sud, INSERM, Université Paris-Saclay, 92296, Châtenay-Malabry, France 2 UMS IPSIT, Univ.