Pectinesterase, Polygalacturonase
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Enzymes Handling/Processing
Enzymes Handling/Processing 1 Identification of Petitioned Substance 2 3 This Technical Report addresses enzymes used in used in food processing (handling), which are 4 traditionally derived from various biological sources that include microorganisms (i.e., fungi and 5 bacteria), plants, and animals. Approximately 19 enzyme types are used in organic food processing, from 6 at least 72 different sources (e.g., strains of bacteria) (ETA, 2004). In this Technical Report, information is 7 provided about animal, microbial, and plant-derived enzymes generally, and more detailed information 8 is presented for at least one model enzyme in each group. 9 10 Enzymes Derived from Animal Sources: 11 Commonly used animal-derived enzymes include animal lipase, bovine liver catalase, egg white 12 lysozyme, pancreatin, pepsin, rennet, and trypsin. The model enzyme is rennet. Additional details are 13 also provided for egg white lysozyme. 14 15 Chemical Name: Trade Name: 16 Rennet (animal-derived) Rennet 17 18 Other Names: CAS Number: 19 Bovine rennet 9001-98-3 20 Rennin 25 21 Chymosin 26 Other Codes: 22 Prorennin 27 Enzyme Commission number: 3.4.23.4 23 Rennase 28 24 29 30 31 Chemical Name: CAS Number: 32 Peptidoglycan N-acetylmuramoylhydrolase 9001-63-2 33 34 Other Name: Other Codes: 35 Muramidase Enzyme Commission number: 3.2.1.17 36 37 Trade Name: 38 Egg white lysozyme 39 40 Enzymes Derived from Plant Sources: 41 Commonly used plant-derived enzymes include bromelain, papain, chinitase, plant-derived phytases, and 42 ficin. The model enzyme is bromelain. -
Use of Plackett-Burman Design for Rapid Screening of Diverse Raw Pectin Sources for Cold-Active Polygalacturonase and Amylase Production by Geotrichum Sp
Int.J.Curr.Microbiol.App.Sci (2015) 4(6): 821-827 ISSN: 2319-7706 Volume 4 Number 6 (2015) pp. 821-827 http://www.ijcmas.com Original Research Article Use of Plackett-Burman Design for rapid Screening of Diverse Raw Pectin Sources for Cold-Active Polygalacturonase and Amylase Production by Geotrichum sp K. Divya and P. Naga Padma* Bhavan s Vivekananda College of Science, Humanities and Commerce, Secunderabad 94, India *Corresponding author A B S T R A C T Cold active polygalacturonases and amylases play significant role in extraction and clarification of fruit juices at industrial level. An optimized production medium with low cost substrates would be very useful for commercial production of these enzymes. The present study was done to screen low cost pectin and starch K e y w o r d s substrates for cold active enzymes production. The different pectin and starch sources screened were fruit and vegetables peels like citrus, pineapple, apple, Amylase, banana, mango, guava, carrot, beetroot, bottle gourd, ridge gourd and potato. For Cold-active efficient screening of the best sources a statistical design like Plackett-Burman was enzyme, used as in this design n variables can be studied in just n-1 experiments only. A Geotrichum sps, twelve experimental design Plackett-Burman was used as the best sources can be Poly shortlisted in consideration with their interactive effects. The pectinolytic and galacturonase, amylolytic yeast isolate was identified as Geotrichum sps and was used for the Plackett- present study. Cold-active pectinase and amylase enzyme activity was assayed by Burman, dinitrosalicylic acid (DNS) method. -
Pectinase: a Useful Tool in Fruit Processing Industries
Mini Review Nutri Food Sci Int J - Volume 5 Issue 5 March 2018 Copyright © All rights are reserved by Jyoti Singh Jadaun DOI: 10.19080/NFSIJ.2018.05.555673 Pectinase: A Useful Tool in Fruit Processing Industries Heena Verma1, Lokesh K Narnoliya2 and Jyoti Singh Jadaun3* 1Department of Microbiology, Panjab university, India 2Department of Biotechnology (DBT), Center of Innovative and Applied Bioprocessing (CIAB), India 3Dyanand Girls Post Graduate College, India Submission: February 03, 2018; Published: March 07, 2018 *Corresponding author: Jyoti Singh Jadaun, Dyanand Girls Post Graduate College, 13/394, Parwati Bagla Rd, Kanpur, Uttar Pradesh 208001, India, Email: Abstract Owing to increase in the demand of fruit juices and fruit products, it became an indispensable need for the fruit processing industries to improve the quality of the fruit juices in a cost effective manner. Enzymes, being the highly efficient biocatalysts, are used at different steps in ofthe juice. process Visual of juiceacceptance production. of the Pectinases juice by the are consumers used for theneed clarification better clarity of the and juice improved by breaking colour thethat polysaccharide remain stable evenpectin during structure cold presentstorage inof the cellproduct. wall of plants into galacturonic acid monomers. Pectin structure breakage facilitates the filtration process and it increases the total yield Keywords: Abbreviations: Biocatalyst; PG: Polygalcturonase; Pectinase; Amylase; PE: Pectin Cellulase; Esterase; Pectin; PL: Starch;Pectin Lyase; Galacturonic -
Molecular Analysis of the Α-Amylase Gene, Astaag1, from Shoyu Koji Mold
Food Sci. Technol. Res., 19 (2), 255–261, 2013 Molecular Analysis of the α-Amylase Gene, AstaaG1, from Shoyu Koji Mold, Aspergillus sojae KBN1340 1* 1 1 2 1 Shoko YoShino-YaSuda , Emi Fujino , Junko MaTSui , Masashi kaTo and Noriyuki kiTaMoTo 1 Food Research Center, Aichi Center for Industry and Science Technology, 2-1-1 Shimpukuji-cho, Nishi-ku, Nagoya, Aichi 451-0083, Japan 2 Department of Applied Biological Chemistry, Faculty of Agriculture, Meijo University, 1-501 Shiogamaguchi, Tempaku-ku, Nagoya, Aichi 468-8502, Japan Received October 1, 2012; Accepted November 28, 2012 Aspergillus sojae generally has only one ortholog of the Aspergillus oryzae taa (α-amylase) gene. The AstaaG1 gene from a shoyu koji mold, A. sojae KBN1340, comprised 2,063 bp with eight introns. AsTaaG1 consisted of 498 amino acid residues possessing high identity to other Aspergilli α-amylase sequences. Dis- ruption of the AstaaG1 gene resulted in no detectable α-amylase production in starch medium. Promoter activity of the AstaaG1 gene, monitored by xylanase activity, was upregulated with replacement of the CCAAT-like sequence. Site-directed mutation of the CCAAT-like sequence increased xylanase production approximately four times higher than that of the wild type. These results clearly demonstrate that the de- creased copy number of the taa gene and the low affinity binding sequence to the Hap complex lead to the lower amylolytic activity of A. sojae compared to that of A. oryzae. Keywords: amylase gene, Aspergillus sojae, CCAAT Introduction as Taka-amylase A (TAA) and has been studied extensively. The filamentous fungi Aspergillus sojae and Aspergil- A. -
Ospg1 Encodes a Polygalacturonase That Determines Cell Wall Architecture and Affects Resistance to Bacterial Blight Pathogen in Rice
OsPG1 encodes a polygalacturonase that determines cell wall architecture and affects resistance to bacterial blight pathogen in rice Yongrun Cao 98439-China National Rice Research Institute Yue Zhang 98439-China National Rice Research Institute Yuyu Chen 98439-China National Rice Research Institute Ning Yu 98439-China National Rice Research Institute Shah Liaqat 98439-China National Rice Research Institute Weixun Wu 98439-China National Rice Research Institute Daibo Chen 98439-China National Rice Research Institute Shihua Cheng 98439-China National Rice Research Institute Xinghua Wei 98439-China National Rice Research Institute Liyong Cao 98439-China National Rice Research Institute Yingxin Zhang 98439-China National Rice Research Institute Qunen Liu ( [email protected] ) China National Rice Research Institute https://orcid.org/0000-0003-1190-7591 Original article Keywords: Rice, Leaf tip necrosis, Polygalacturonase, Bacterial blight, Cell wall Posted Date: January 25th, 2021 DOI: https://doi.org/10.21203/rs.3.rs-66825/v2 Page 1/27 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Version of Record: A version of this preprint was published at Rice on April 21st, 2021. See the published version at https://doi.org/10.1186/s12284-021-00478-9. Page 2/27 Abstract Background: Plant cell walls are the main physical barrier encountered by pathogens colonizing plant tissues. Alteration of cell wall integrity (CWI) can activate specic defenses by impairing proteins involved in cell wall biosynthesis, degradation and remodeling, or cell wall damage due to biotic or abiotic stress. Polygalacturonase (PG) depolymerize pectin by hydrolysis, thereby altering pectin composition and structures and activating cell wall defense. -
PFK-2/Fbpase-2: Maker and Breaker of the Essential Biofactor Fructose-2, 6-Bisphosphate
30 Review TRENDS in Biochemical Sciences Vol.26 No.1 January 2001 PFK-2/FBPase-2: maker and breaker of the essential biofactor fructose-2, 6-bisphosphate DavidA. Okar, Ànna Manzano,Aurèa Navarro-Sabatè, Lluìs Riera, Ramon Bartrons and Alex J. Lange Fructose-2,6-bisphosphate is responsible for mediating glucagon-stimulated extraction in base led to the discovery of F-2,6-P2 and gluconeogenesis in the liver.This discovery has led to the realization that this the realization that it was either formed or destroyed compound plays a significant role in directing carbohydrate fluxes in all during metabolic transitions where its concentration eukaryotes. Biophysical studies of the enzyme that both synthesizes and determined changes in glycolytic and gluconeogenic degrades this biofactor have yielded insight into its molecular enzymology. carbon flux in the liver. Interest in this compound grew Moreover, the metabolic role of fructose-2,6-bisphosphate has great potential rapidly because it was found to be a most potent in the treatment of diabetes. positive allosteric effector of 6-phosphofructo-1- kinase (PFK-1; EC 2.7.1.11) and an inhibitor of A trail that began with the discovery of a highly potent fructose-1,6-bisphosphatase (FBPase-1; EC 3.1.3.11). regulator of mammalian hepatic carbohydrate Because of its antagonistic actions on these enzymes, metabolism, fructose-2,6-bisphosphate (F-2,6-P2), led F-2,6-P2 plays a crucial role in the control of the to the discovery of the bifunctional enzyme opposing hepatic glycolytic and gluconeogenic 6-phosphofructo-2-kinase/fructose- pathways1–4 (Fig. -
Yeast Isolates from Diverse Sources for Cold- Active Polygalacturonase and Amylase Production
INTERNATIONAL JOURNAL OF SCIENTIFIC & TECHNOLOGY RESEARCH VOLUME 3, ISSUE 4, APRIL 2014 ISSN 2277-8616 Yeast Isolates From Diverse Sources For Cold- Active Polygalacturonase And Amylase Production K. Divya, P. Naga Padma Abstract: Cold–active polygalacturonase and amylase producers were screened using enrichment culture technique. The diverse sources screened were cold stored spoilt fruits and vegetables from different local super markets, market waste dumped soils, fruit waste dumped soils, mountain soils and Himalayan soils. About sixty yeasts showing pectinolytic activity were isolated by ruthenium red plate assay. Eight yeasts with higher zones of pectin hydrolysis were selected and tested for cold-active polygalacturonase and amylase production. The cultures were tested for cold active pectinase and amylase enzyme activity by dinitrosalicylic acid (DNS) method. The cultures were grown at both room temperature (20-25 °C) and cold temperatures (5°C) but the cold active enzyme activity was tested at 5°C. Highest cold-active pectinase producing yeast culture with good cold-active amylase activity was selected for further study. Thus the present cold-active polygalacturonase producer with amylase activity could have better application in fruit juice clarification and so could be a potential isolate. Keywords: Amylase, cold-active enzyme, Geotrichum sps, polygalacturonase, ruthenium red, screening, yeasts. ———————————————————— 1 INTRODUCTION: Diverse pectin rich sources like refrigerated fruits and Pectinases are depolymerizing enzymes that degrade vegetables fruit /vegetable dumped cold soils and cold soils pectic substances present in middle lamella and primary were collected in sterile polythene bags. cell walls of plant tissues [8]. Pectinases have wide spread applications in food industry for clarification of fruit juices, 2.2 Primary screening: wines [1], [23] coffee and tea fermentations [23]. -
Structural Study of the Acid Sphingomyelinase Protein Family
Structural Study of the Acid Sphingomyelinase Protein Family Alexei Gorelik Department of Biochemistry McGill University, Montreal August 2017 A thesis submitted to McGill University in partial fulfillment of the requirements of the degree of Doctor of Philosophy © Alexei Gorelik, 2017 Abstract The acid sphingomyelinase (ASMase) converts the lipid sphingomyelin (SM) to ceramide. This protein participates in lysosomal lipid metabolism and plays an additional role in signal transduction at the cell surface by cleaving the abundant SM to ceramide, thus modulating membrane properties. These functions are enabled by the enzyme’s lipid- and membrane- interacting saposin domain. ASMase is part of a small family along with the poorly characterized ASMase-like phosphodiesterases 3A and 3B (SMPDL3A,B). SMPDL3A does not hydrolyze SM but degrades extracellular nucleotides, and is potentially involved in purinergic signaling. SMPDL3B is a regulator of the innate immune response and podocyte function, and displays a partially defined lipid- and membrane-modifying activity. I carried out structural studies to gain insight into substrate recognition and molecular functions of the ASMase family of proteins. Crystal structures of SMPDL3A uncovered the helical fold of a novel C-terminal subdomain, a slightly distinct catalytic mechanism, and a nucleotide-binding mode without specific contacts to their nucleoside moiety. The ASMase investigation revealed a conformational flexibility of its saposin domain: this module can switch from a detached, closed conformation to an open form which establishes a hydrophobic interface to the catalytic domain. This open configuration represents the active form of the enzyme, likely allowing lipid access to the active site. The SMPDL3B structure showed a narrow, boot-shaped substrate binding site that accommodates the head group of SM. -
Production of Carbohydrases for Developing Soy Meal As
PRODUCTION OF CARBOHYDRASES FOR DEVELOPING SOY MEAL AS PROTEIN SOURCE FOR ANIMAL FEED A Dissertation Presented to The Graduate Faculty of The University of Akron In Partial Fulfillment Of the Requirements for the Degree Doctor of Philosophy Qian Li May, 2017 PRODUCTION OF CARBOHYDRASES FOR DEVELOPING SOY MEAL AS PROTEIN SOURCE FOR ANIMAL FEED Qian Li Dissertation Approved: Accepted: Advisor Department Chair Dr. Lu-Kwang Ju Dr. Michael H. Cheung Committee Member Dean of the College Dr. Jie Zheng Dr. Donald P. Visco Jr. Committee Member Dean of the Graduate School Dr. Lingyun Liu Dr. Chand Midha Committee Member Date Dr. Ge Zhang Committee Member Dr. Pei-Yang Liu ii ABSTRACT Global demand for seafood is growing rapidly and more than 40% of the demand is met by aquaculture. Conventional aquaculture diet used fishmeal as the protein source. The limited production of fishmeal cannot meet the increase of aquaculture production. Therefore, it is desirable to partially or totally replace fishmeal with less-expensive protein sources, such as poultry by-product meal, feather meal blood meal, or meat and bone meal. However, these feeds are deficient in one or more of the essential amino acids, especially lysine, isoleucine and methionine. And, animal protein sources are increasingly less acceptable due to health concerns. One option is to utilize a sustainable, economic and safe plant protein sources, such as soybean. The soybean industry has been very prominent in many countries in the last 20 years. The worldwide soybean production has increased 106% since 1996 to 2010[1]. Soybean protein is becoming the best choice of sustainable, economic and safe protein sources. -
(12) United States Patent (10) Patent No.: US 8,124,103 B2 Yusibov Et Al
USOO81241 03B2 (12) United States Patent (10) Patent No.: US 8,124,103 B2 Yusibov et al. (45) Date of Patent: *Feb. 28, 2012 (54) INFLUENZA ANTIGENS, VACCINE 5,383,851 A 1/1995 McKinnon, Jr. et al. 5,403.484 A 4/1995 Ladner et al. COMPOSITIONS, AND RELATED METHODS 5,417,662 A 5/1995 Hjertman et al. 5,427,908 A 6/1995 Dower et al. (75) Inventors: Vidadi Yusibov, Havertown, PA (US); 5,466,220 A 11/1995 Brenneman Vadim Mett, Newark, DE (US); 5,480,381 A 1/1996 Weston 5,502,167 A 3, 1996 Waldmann et al. Konstantin Musiychuck, Swarthmore, 5,503,627 A 4/1996 McKinnon et al. PA (US) 5,520,639 A 5/1996 Peterson et al. 5,527,288 A 6/1996 Gross et al. (73) Assignee: Fraunhofer USA, Inc, Plymouth, MI 5,530,101 A 6/1996 Queen et al. 5,545,806 A 8/1996 Lonberg et al. (US) 5,545,807 A 8, 1996 Surani et al. 5,558,864 A 9/1996 Bendig et al. (*) Notice: Subject to any disclaimer, the term of this 5,565,332 A 10/1996 Hoogenboom et al. patent is extended or adjusted under 35 5,569,189 A 10, 1996 Parsons U.S.C. 154(b) by 0 days. 5,569,825 A 10/1996 Lonberg et al. 5,580,717 A 12/1996 Dower et al. This patent is Subject to a terminal dis 5,585,089 A 12/1996 Queen et al. claimer. 5,591,828 A 1/1997 Bosslet et al. -
The Role of Triacylglycerol in Plant Stress Response
plants Review The Role of Triacylglycerol in Plant Stress Response Junhao Lu 1, Yang Xu 1, Juli Wang 1, Stacy D. Singer 2,* and Guanqun Chen 1,* 1 Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, T6G 2P5 Alberta, Canada; [email protected] (J.L.); [email protected] (Y.X.); [email protected] (J.W.) 2 Agriculture and Agri-Food Canada, Lethbridge Research and Development Centre, Lethbridge, T1J 4B1 Alberta, Canada * Correspondence: [email protected] (S.D.S.); [email protected] (G.C.); Tel.: +1-403-317-3386 (S.D.S.); +1-780-492-3148 (G.C.) Received: 4 March 2020; Accepted: 2 April 2020; Published: 8 April 2020 Abstract: Vegetable oil is mainly composed of triacylglycerol (TAG), a storage lipid that serves as a major commodity for food and industrial purposes, as well as an alternative biofuel source. While TAG is typically not produced at significant levels in vegetative tissues, emerging evidence suggests that its accumulation in such tissues may provide one mechanism by which plants cope with abiotic stress. Different types of abiotic stress induce lipid remodeling through the action of specific lipases, which results in various alterations in membrane lipid composition. This response induces the formation of toxic lipid intermediates that cause membrane damage or cell death. However, increased levels of TAG under stress conditions are believed to function, at least in part, as a means of sequestering these toxic lipid intermediates. Moreover, the lipid droplets (LDs) in which TAG is enclosed also function as a subcellular factory to provide binding sites and substrates for the biosynthesis of bioactive compounds that protect against insects and fungi. -
The Botrytis Cinerea Endopolygalacturonase Gene Family Promotor: Dr
The Botrytis cinerea endopolygalacturonase gene family Promotor: Dr. Ir. P.J.G.M. de Wit Hoogleraar Fytopathologie Copromotor: Dr. J.A.L. van Kan Universitair docent, Laboratorium voor Fytopathologie ii Arjen ten Have The Botrytis cinerea endopolygalacturonase gene family Proefschrift ter verkrijging van de graad van doctor op gezag van de rector magnificus van Wageningen Universiteit, Dr. C.M. Karssen, in het openbaar te verdedigen op maandag 22 mei 2000 des namiddags te vier uur in de Aula. iii The research described in this thesis was performed within the Graduate School of Experimental Plant Sciences (Theme 2: Interactions between Plants and Biotic Agents) at the Laboratory of Phytopathology, Wageningen University, Wageningen The Netherlands. The research was financially supported by The Dutch Technology Foundation (Stichting Technische Wetenschappen, Utrecht The Netherlands, http:\\www.stw.nl\) grant WBI.33.3046. The Botrytis cinerea endopolygalacturonase gene family / Arjen ten Have. -[S.l.:s.n.] Thesis Wageningen University. -With ref. - With summary in Dutch. ISBN: 90-5808-227-X Subject Headings: polygalacturonase, pectin, Botrytis cinerea, gray mould, tomato iv You want to live a life time each and every day You've struggled before, I swear to do it again You’ve told it before, until I’m weakened and sore Seek hallowed land (Hallowed land, Paradise Lost-draconian times) v Abbreviations AOS active oxygen species Bcpg Botrytis cinerea endopolygalacturonase (gene) BcPG Botrytis cinerea endopolygalacturonase (protein) bp basepairs CWDE cell wall degrading enzyme DP degree of polymerisation endoPeL endopectate lyase endoPG endopolygalacturonase EST expressed sequence tag exoPeL exopectate lyase exoPG exopolygalacturonase GA D-galacturonic acid HPI hours post inoculation kbp kilobasepairs LRR leucine-rich repeat nt nucleotides OGA oligogalacturonic acid PeL pectate lyase PG polygalacturonase PGA polygalacturonic acid PGIP polygalacturonase-inhibiting protein PME pectin methylesterase PnL pectin lyase PR pathogenesis-related vi Table of Contents Chapter 1.