A New Blind Cyprinid Fish from Iraq
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Preserving the Tree of Life of the Fish Family Cyprinidae in Africa in the Face of the Ongoing Extinction Crisis
Genome Preserving the tree of life of the fish family Cyprinidae in Africa in the face of the ongoing extinction crisis Journal: Genome Manuscript ID gen-2018-0023.R3 Manuscript Type: Article Date Submitted by the 02-Mar-2019 Author: Complete List of Authors: Adeoba, Mariam; University of Johannesburg Tesfamichael, Solomon; University of Johannesburg Yessoufou, Kowiyou; University of Johannesburg Conservation, African freshwater Ecosystems, IUCN Red List, EDGE, DNA Keyword: Draft barcoding Is the invited manuscript for consideration in a Special 7th International Barcode of Life Issue? : https://mc06.manuscriptcentral.com/genome-pubs Page 1 of 42 Genome Preserving the tree of life of the fish family Cyprinidae in Africa in the face of the ongoing extinction crisis Mariam Salami1, Solomon Tesfamichael2, Kowiyou Yessoufou2 1Department of Zoology, University of Johannesburg, Kingsway Campus, PO Box 524, Auckland Park 2006, South Africa 2Department of Geography, Environmental Management and Energy studies, University of Johannesburg, Kingsway Campus, PO Box 524, Auckland Park 2006, South Africa *Corresponding author: Kowiyou Yessoufou [email protected] Draft 1 https://mc06.manuscriptcentral.com/genome-pubs Genome Page 2 of 42 Abstract Our understanding of how the phylogenetic tree of fishes might be affected by the ongoing extinction risk is poor. This is due to the unavailability of comprehensive DNA data, especially for many African lineages. In addition, the ongoing taxonomic confusion within some lineages, e.g. Cyprinidae, makes it difficult to contribute to the debate on how the fish tree of life might be shaped by extinction. Here, we combine COI sequences and taxonomic information to assemble a fully sampled phylogeny of the African Cyprinidae and investigate whether we might lose more phylogenetic diversity (PD) than expected if currently-threatened species go extinct. -
Reproductive Behavior, Development and Eye Regression in the Cave
Neotropical Ichthyology, 7(3):479-490, 2009 Copyright © 2009 Sociedade Brasileira de Ictiologia Reproductive behavior, development and eye regression in the cave armored catfish, Ancistrus cryptophthalmus Reis, 1987 (Siluriformes: Loricariidae), breed in laboratory Sandro Secutti and Eleonora Trajano The troglobitic armored catfish, Ancistrus cryptophthalmus (Loricariidae, Ancistrinae) is known from four caves in the São Domingos karst area, upper rio Tocantins basin, Central Brazil. These populations differ in general body shape and degree of reduction of eyes and of pigmentation. The small Passa Três population (around 1,000 individuals) presents the most reduced eyes, which are not externally visible in adults. A small group of Passa Três catfish, one male and three females, reproduced spontaneously thrice in laboratory, at the end of summertime in 2000, 2003 and 2004. Herein we describe the reproductive behavior during the 2003 event, as well as the early development of the 2003 and 2004 offsprings, with focus on body growth and ontogenetic regression of eyes. The parental care by the male, which includes defense of the rock shelter where the egg clutch is laid, cleaning and oxygenation of eggs, is typical of many loricariids. On the other hand, the slow development, including delayed eye degeneration, low body growth rates and high estimated longevity (15 years or more) are characteristic of precocial, or K-selected, life cycles. In the absence of comparable data for close epigean relatives (Ancistrus spp.), it is not possible to establish whether these features are an autapomorphic specialization of the troglobitic A. cryptophthalmus or a plesiomorphic trait already present in the epigean ancestor, possibly favoring the adoption of the life in the food-poor cave environment. -
Checklist of Fish and Invertebrates Listed in the CITES Appendices
JOINTS NATURE \=^ CONSERVATION COMMITTEE Checklist of fish and mvertebrates Usted in the CITES appendices JNCC REPORT (SSN0963-«OStl JOINT NATURE CONSERVATION COMMITTEE Report distribution Report Number: No. 238 Contract Number/JNCC project number: F7 1-12-332 Date received: 9 June 1995 Report tide: Checklist of fish and invertebrates listed in the CITES appendices Contract tide: Revised Checklists of CITES species database Contractor: World Conservation Monitoring Centre 219 Huntingdon Road, Cambridge, CB3 ODL Comments: A further fish and invertebrate edition in the Checklist series begun by NCC in 1979, revised and brought up to date with current CITES listings Restrictions: Distribution: JNCC report collection 2 copies Nature Conservancy Council for England, HQ, Library 1 copy Scottish Natural Heritage, HQ, Library 1 copy Countryside Council for Wales, HQ, Library 1 copy A T Smail, Copyright Libraries Agent, 100 Euston Road, London, NWl 2HQ 5 copies British Library, Legal Deposit Office, Boston Spa, Wetherby, West Yorkshire, LS23 7BQ 1 copy Chadwick-Healey Ltd, Cambridge Place, Cambridge, CB2 INR 1 copy BIOSIS UK, Garforth House, 54 Michlegate, York, YOl ILF 1 copy CITES Management and Scientific Authorities of EC Member States total 30 copies CITES Authorities, UK Dependencies total 13 copies CITES Secretariat 5 copies CITES Animals Committee chairman 1 copy European Commission DG Xl/D/2 1 copy World Conservation Monitoring Centre 20 copies TRAFFIC International 5 copies Animal Quarantine Station, Heathrow 1 copy Department of the Environment (GWD) 5 copies Foreign & Commonwealth Office (ESED) 1 copy HM Customs & Excise 3 copies M Bradley Taylor (ACPO) 1 copy ^\(\\ Joint Nature Conservation Committee Report No. -
A Guide to the Parasites of African Freshwater Fishes
A Guide to the Parasites of African Freshwater Fishes Edited by T. Scholz, M.P.M. Vanhove, N. Smit, Z. Jayasundera & M. Gelnar Volume 18 (2018) Chapter 2.1. FISH DIVERSITY AND ECOLOGY Martin REICHARD Diversity of fshes in Africa Fishes are the most taxonomically diverse group of vertebrates and Africa shares a large portion of this diversity. This is due to its rich geological history – being a part of Gondwana, it shares taxa with the Neotropical region, whereas recent close geographical affnity to Eurasia permitted faunal exchange with European and Asian taxa. At the same time, relative isolation and the complex climatic and geological history of Africa enabled major diversifcation within the continent. The taxonomic diversity of African freshwater fshes is associated with functional and ecological diversity. While freshwater habitats form a tiny fraction of the total surface of aquatic habitats compared with the marine environment, most teleost fsh diversity occurs in fresh waters. There are over 3,200 freshwater fsh species in Africa and it is likely several hundreds of species remain undescribed (Snoeks et al. 2011). This high diversity and endemism is likely mirrored in diversity and endemism of their parasites. African fsh diversity includes an ancient group of air-breathing lungfshes (Protopterus spp.). Other taxa are capable of breathing air and tolerate poor water quality, including several clariid catfshes (e.g., Clarias spp.; Fig. 2.1.1D) and anabantids (Ctenopoma spp.). Africa is also home to several bichir species (Polypterus spp.; Fig. 2.1.1A), an ancient fsh group endemic to Africa, and bonytongue Heterotis niloticus (Cuvier, 1829) (Osteoglossidae), a basal actinopterygian fsh. -
Volume 2. Animals
AC20 Doc. 8.5 Annex (English only/Seulement en anglais/Únicamente en inglés) REVIEW OF SIGNIFICANT TRADE ANALYSIS OF TRADE TRENDS WITH NOTES ON THE CONSERVATION STATUS OF SELECTED SPECIES Volume 2. Animals Prepared for the CITES Animals Committee, CITES Secretariat by the United Nations Environment Programme World Conservation Monitoring Centre JANUARY 2004 AC20 Doc. 8.5 – p. 3 Prepared and produced by: UNEP World Conservation Monitoring Centre, Cambridge, UK UNEP WORLD CONSERVATION MONITORING CENTRE (UNEP-WCMC) www.unep-wcmc.org The UNEP World Conservation Monitoring Centre is the biodiversity assessment and policy implementation arm of the United Nations Environment Programme, the world’s foremost intergovernmental environmental organisation. UNEP-WCMC aims to help decision-makers recognise the value of biodiversity to people everywhere, and to apply this knowledge to all that they do. The Centre’s challenge is to transform complex data into policy-relevant information, to build tools and systems for analysis and integration, and to support the needs of nations and the international community as they engage in joint programmes of action. UNEP-WCMC provides objective, scientifically rigorous products and services that include ecosystem assessments, support for implementation of environmental agreements, regional and global biodiversity information, research on threats and impacts, and development of future scenarios for the living world. Prepared for: The CITES Secretariat, Geneva A contribution to UNEP - The United Nations Environment Programme Printed by: UNEP World Conservation Monitoring Centre 219 Huntingdon Road, Cambridge CB3 0DL, UK © Copyright: UNEP World Conservation Monitoring Centre/CITES Secretariat The contents of this report do not necessarily reflect the views or policies of UNEP or contributory organisations. -
Oxyeleotris Colasi (Teleostei: Eleotridae), a New Blind Cave Fish from Lengguru in West Papua, Indonesia
Oxyeleotris colasi (Teleostei: Eleotridae), a new blind cave fish from Lengguru in West Papua, Indonesia by Laurent POUYAUD* (1), KADARUSMAN (1, 2), Renny K. HADIATY (3), Jacques SLEMBROUCK (1), Napoleon LEMAUK (4), Ruby V. KUSUMAH (5) & Philippe KEITH (6) ABSTRACT. - Oxyeleotris colasi is the first hypogean fish recorded from West Papua. The habitat consists of a freshwater pool in the cave of Jabuenggara located in the heart of Seraran anticline in the limestone karst of Lengguru. The new spe- cies is most closely related to the blind cave fishO. caeca described by Allen (1996) from eastern New Guinea. The two troglomorphic species are hypothesised to be related to O. fimbriata, an epigean freshwater gudgeon that ranges widely in New Guinea and northern Australia (Allen, 1996). Oxyeleotris colasi differs from its congeners by the absence of eyes, its skin and fins being totally depigmented, the presence of a well developed sensory papillae system partly consisting of low raised fleshy ridges on each side of the head, a reduced number of cephalic sensory pores, a reduced number of scales on head and body, a long head with a short snout length, a narrow mouth width and a long upper jaw length, body shape with a shallow anterior body depth and narrow body width, a long and deep caudal peduncle, long predorsal and prepectoral lengths, and a long pectoral fin. RÉSUMÉ. - Oxyeleotris colasi, une nouvelle espèce de poisson cavernicole de Lengguru en Papouasie occidentale (Teleostei : Eleotridae). Oxyeleotris colasi est la première espèce de poisson hypogée décrite de Papouasie occidentale. Elle a été capturée dans un trou d’eau douce situé dans la grotte de Jabuenggara au cœur de l’anticlinal de Seraran dans le karst de Lengguru. -
Etude Comparã©E Du Comportement
Int. J. Speleol. 4 (1972), pp. 139-169. Etude comparee du comportement alimentaire de deux poissons cavernicoles (Anoptichthys jordani Hubbs et Innes et Caecobarbus geertsi Blgr.l par Georges THINES et Nicole WISSOCQ* INTRODUCTION Dans un travail preliminaire pam dans ce meme Journal, Thines, Soffie et Vandenbussche (1966) avaient procede a l'analyse du comportement alimentaire du poisson cavernicole Anoptichthys Gen. et des hybrides F 1 obtenus par croisement Astyanax x Anoptichthys, la premiere espece etant la forme ancestrale epigee de la seconde. Les resultats de ces recherches avaient mis en evidence les traits essentiels de la reaction de la forme cavernicole Anoptichthys a la stimulation chimique. Ces donnees avaient egalement permis de caracteriser la stereotypie d'exploration de ce poisson consecutive a la stimulation chimique initiale. Les auteurs precites avaient etabli que l'exploration alimentaire s'effectuait sous la forme d'une plongee vers Ie fond suivie d'une recherche active localisee autour du point d'impact de la nourriture sur Ie substrat. L'efficacite de saisie, comparee a celIe de la forme ancestrale Astyanax, est tres deficitaire. De plus, la plongee vers Ie fond peut etre declenchee par des stimuli perturbants de nature mecanique. L'ensemble de ces observations avait ete soumis a la discussion et avait amene a conclure que Ie comportement alimentaire, outre les deficits evidents qu'il accuse sur Ie plan de l'efficacite spatio-temporelle de saisie, intervenait a titre substitutif dans des situations declenchant des comportements phobiques typiques chez la forme epigee Astyanax. POSITION DU PROBLEME Si I'on se refere a la classification de Vandel (1964), l'Anoptichthys est un cavernicole recent, tandis que Ie Caecobarbus est un cavernicole ancien. -
Summary Output
AC29 Doc. 13.3 Annex 1 Summary output To comply with paragraph 1 a) of Resolution Conf. 12.8 (Rev. CoP17), a summary output of trade in wild-sourced specimens was produced from data extracted from the CITES Trade Database on 26th April 2017. An excel version of the data output is also available (see AC29 Doc Inf. 4), which details the trade levels for each individual country with direct exports over the five most recent years (2011-2015). Table 1. Data included for the summary output of ‘wild-sourced’ trade Data included CITES Trade Database Gross exports; report type Direct trade only (re-exports are excluded) Current Appendix Appendix II taxa and Appendix I taxa subject to reservation Source codes1 Wild (‘W’), ranched (‘R’), unknown (‘U’) and no reported source (‘-’) Purpose codes1 All Terms included Selected terms2: baleen, bodies, bones, carapaces, carvings, cloth, eggs, egg (live), fins, gall and gall bladders, horns and horn pieces, ivory pieces, ivory carvings, live, meat, musk (including derivatives for Moschus moschiferus), plates, raw corals, scales, shells, skin pieces, skins, skeletons, skulls, teeth, trophies, and tusks. Units of measure Number (unit = blank) and weight (unit = kilogram3) [Trade in other units of measure (e.g. litres, metres etc.) were excluded] Year range 2011-20154 Contextual The global conservation status and population trend of the species as published information in The IUCN Red List of Threatened Species; Whether the species/country combination was subject to the Review of Significant Trade process for the last three iterations (post CoP14, post CoP15 and post CoP16); Whether the taxon was reported in trade for the first time within the CITES Trade Database since 2012 (e.g. -
Making a Big Splash with Louisiana Fishes
Making a Big Splash with Louisiana Fishes Written and Designed by Prosanta Chakrabarty, Ph.D., Sophie Warny, Ph.D., and Valerie Derouen LSU Museum of Natural Science To those young people still discovering their love of nature... Note to parents, teachers, instructors, activity coordinators and to all the fishermen in us: This book is a companion piece to Making a Big Splash with Louisiana Fishes, an exhibit at Louisiana State Universi- ty’s Museum of Natural Science (MNS). Located in Foster Hall on the main campus of LSU, this exhibit created in 2012 contains many of the elements discussed in this book. The MNS exhibit hall is open weekdays, from 8 am to 4 pm, when the LSU campus is open. The MNS visits are free of charge, but call our main office at 225-578-2855 to schedule a visit if your group includes 10 or more students. Of course the book can also be enjoyed on its own and we hope that you will enjoy it on your own or with your children or students. The book and exhibit was funded by the Louisiana Board Of Regents, Traditional Enhancement Grant - Education: Mak- ing a Big Splash with Louisiana Fishes: A Three-tiered Education Program and Museum Exhibit. Funding was obtained by LSUMNS Curators’ Sophie Warny and Prosanta Chakrabarty who designed the exhibit with Southwest Museum Services who built it in 2012. The oarfish in the exhibit was created by Carolyn Thome of the Smithsonian, and images exhibited here are from Curator Chakrabarty unless noted elsewhere (see Appendix II). -
Inventaire Rapide Des Zones Humides Représentatives En République Démocratique Du Congo
Inventaire Rapide des Zones Humides Représentatives en République Démocratique du Congo Editors and Major Contributors : Michele Thieme, Aurelie Shapiro, Alejandra Colom, Uli Schliewen, Nikolai Sindorf, Andre Kamdem Toham Supported by the Swiss Grant for Africa, Ramsar Convention Secretariat Table of Contents Executive Summary I. Introduction II. Approach and Methodology for Rapid Inventory of Wetland Priority Areas A. Aquatic Ecosystem Classification and Gap Analysis B. Human Use / Suitability Analysis C. Marxan Model D. Delineation and Prioritization of Wetland Areas E. Threats assessment, socio economic importance and key stakeholders Appendix I. Contributors Appendix II. List of Protected Areas used in the Gap Analysis Appendix III. Photos of Wetland Areas Appendix IV. List of Fish Species by Wetland Priority Area Executive Summary In 2002, the government of the Democratic Republic of Congo committed to increase its protected area coverage to 15% from just over 8%. WWF, RAMSAR, OSFAC and other partners supported the effort by convening an expert workshop in Kinshasa, DRC in November 2007, to undertake a country wide biodiversity assessment, including a rapid inventory and prioritization of the biodiversity value of the wetlands of the Democratic Republic of Congo. Several products were developed prior to the workshop to facilitate the work of the experts. These were: (1) a map classifying small sub‐basins in DRC by the predominant aquatic habitat types and (2) a map of human use/suitability. The aquatic habitat or ecosystem map was used as a basis for ensuring representation of all habitat types across the country and the suitability map provided a measure of the level of human impact. -
Amblyopsidae Bonaparte 1846 Cavefishes
ISSN 1545-150X California Academy of Sciences A N N O T A T E D C H E C K L I S T S O F F I S H E S Number 25 February 2004 Family Amblyopsidae Bonaparte 1846 cavefishes By William J. Poly Department of Ichthyology, California Academy of Sciences, Golden Gate Park, San Francisco, California 94118, U.S.A. e-mail: [email protected] Graham S. Proudlove Department of Zoology, The Manchester Museum, Manchester University, Manchester, M13 9PL, U.K. e-mail: [email protected] The Amblyopsidae is a small, mostly subterranean family of freshwater fishes endemic to the eastern and central United States. Body shape is gobylike, head large. Mouth usually oblique with lower jaw protruding beyond upper. Eye development varies from externally visible eyes to rudimentary eyes hidden under the skin. No spines present in fins, except first ray in dorsal fin of Typhlichthys subterraneus reported as spinous. Single dorsal fin with 7–12 rays. Anal fin with 7–11 rays. Shapes of dorsal and anal fins similar. Dorsal fin origin anterior to anal fin origin. Pectoral fins with 9–12 rays. Pelvic fins present with 3–5 rays (usually 4) in Amblyopsis spelaea, absent in remaining five species. Caudal fin elliptical, lanceolate, or rounded. Fin rays branched, except in Speoplatyrhinus poulsoni. Postcleithrum present or absent. Scales cycloid, small and embedded. Branchiostegal rays 6. Gill rakers present in some species, reported as absent in Chologaster cornuta and Forbesichthys agassizii. Swim bladder present. Urogenital opening and anus located in front of the pelvic fins in the thoracic region in adults. -
Neotropical Vol.4
Neotrop. Helminthol., 4(1), 2010 2010 Asociación Peruana de Helmintología e Invertebrados Afines (APHIA) ISSN: 2218-6425 impreso / ISSN: 1995-1043 on line REVIEW/ ARTÍCULO DE REVISIÓN RHABDOCHONA (R.) URUYENI (NEMATODA, RHABDOCHONIDAE) IN BRAZIL: PRESENT STATUS OF SOUTH AMERICAN RHABDOCHONA RAILLIET WITH A WORLDWIDE BIBLIOGRAPHICAL SURVEY OF THE GENUS FROM 1845 TO 2010 RHABDOCHONA (R.) URUYENI (NEMATODA, RHABDOCHONIDAE) EN BRASIL: PRESENTE SITUACIÓN DE RHABDOCHONA RAILLIET EN SUD-AMÉRICA, CON UN LEVANTAMIENTO BIBLIOGRÁFICO A NIVEL MUNDIAL DEL GÉNERO DESDE 1845 HASTA 2010 Roberto Magalhães Pinto1, 2*, Dely Noronha1, Marcelo Knoff 1 & Delir Corrêa Gomes1 Suggested citation: Pinto, M.R., Noronha, D., Marcelo Knoff, M., Gomes, DC. 2010. Rhabdochona (R.) uruyeni (Nematoda, Rhabdochonidae) in Brazil: present status of South American Rhabdochona Railliet with a worldwide bibliographical survey of the genus from 1845 to 2010. Neotropical Helminthology, vol. 4, nº 1, pp. 49-69. Abstract During studies of fish helminths, deposited in the Helminthological Collection of the Oswaldo Cruz Institute (CHIOC), some samples of nematodes were studied and identified as Rhabdochona uruyeni Diaz-Ungria, 1968. The present status of the species occurring in South America is discussed and updated. To facilitate further accesses, a worldwide bibliographical survey related to systematic, taxonomic, morphological, biological, cladistical and ecological approaches to the genus, covering a period of 165 years is presented. To date, Rhabdochona (Rhabdochona) acuminata is referred in Argentina, Brazil, and Ecuador, together with Rhabdochona (Filochona) fabianae in Argentina and Rhabdochona (Rhabdochona) uruyeni in Venezuela and now in Brazil, for the first time and in a new host. Also, Rhabdochona spp. are cited in Argentina, Brazil and Peru.