ORIGINAL RESEARCH published: 31 May 2017 doi: 10.3389/fphys.2017.00362 You Are What You Eat: A Genomic Analysis of the Gut Microbiome of Captive and Wild Octopus vulgaris Paralarvae and Their Zooplankton Prey Álvaro Roura 1, 2*, Stephen R. Doyle 1, 3, Manuel Nande 4, 5 and Jan M. Strugnell 1, 6 1 Department of Ecology, Environment and Evolution, La Trobe University, Melbourne, VIC, Australia, 2 Ecología y Biodiversidad Marina, Instituto de Investigaciones Marinas (CSIC), Vigo, Spain, 3 Parasite Genomic Group, Wellcome Trust Sanger Institute, Cambridge, United Kingdom, 4 Grupo de Acuicultura Marina, Instituto Español de Oceanografía, Vigo, Spain, 5 Departamento de Bioquímica, Genética e Inmunología, Universidad de Vigo, Vigo, Spain, 6 Marine Biology and Aquaculture, James Cook University, Townsville, QLD, Australia The common octopus (Octopus vulgaris) is an attractive species for aquaculture, however, several challenges inhibit sustainable commercial production. Little is known Edited by: about the early paralarval stages in the wild, including diet and intestinal microbiota, Giovanna Ponte, CephRes and SZN, Italy which likely play a significant role in development and vitality of this important life stage. Reviewed by: High throughput sequencing was used to characterize the gastrointestinal microbiome Muthugounder S. Shivakumar, of wild O. vulgaris paralarvae collected from two different upwelling regions off the coast Periyar University, India Andrea Tarallo, of North West Spain (n = 41) and Morocco (n = 35). These were compared to that Stazione Zoologica Anton Dohrn, Italy of paralarvae reared with Artemia for up to 25 days in captivity (n = 29). In addition, *Correspondence: the gastrointestinal microbiome of zooplankton prey (crabs, copepod and krill) was Álvaro Roura also analyzed to determine if the microbial communities present in wild paralarvae are
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