Phylogeography in Sexual and Parthenogenetic European Oribatida

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Phylogeography in Sexual and Parthenogenetic European Oribatida GÖTTINGER ZENTRUM FÜR BIODIVERSITÄTSFORSCHUNG UND ÖKOLOGIE - GÖTTINGEN CENTRE FOR BIODIVERSITY AND ECOLOGY - Phylogeography in sexual and parthenogenetic European Oribatida Dissertation zur Erlangung des akademischen Grades eines Doctor rerum naturalium an der Georg-August Universität Göttingen vorgelegt von Dipl. Biol. Martin Julien Rosenberger aus Langen, Hessen Referent: Prof. Dr. Stefan Scheu Koreferent: PD Dr. Mark Maraun Tag der Einreichung: 21 Oktober 2010 Tag der mündlichen Prüfung: Curriculum Vitae Curriculum Vitae Personal data Name: Martin Julien Rosenberger Address: Brandenburgerstrasse 53, 63329 Egelsbach Date of Birth: October 31st 1980 Place of Birth: Langen (Hessen) Education 1987-1991 Wilhelm Leuschner Primary School, Egelsbach 1991-2000 Abitur at Dreieich-Schule, Langen 2000-2006 Study of Biology at Darmstadt University of Technology, Germany 2006-2007 Diploma thesis: “Postglaziale Kolonisation von Zentraleuropa durch parthenogenetische (Platynothrus peltifer) und sexuelle (Steganacarus magnus) Hornmilben (Oribatida)” at Darmstadt University of Technology, Germany under supervision of Dipl. Biol. Katja Domes and Prof. Dr. S. Scheu 2007-2008 Scientific assistant at Darmstadt University of Technology, Germany 2008-2009 Scientific officer Darmstadt University of Technology, Germany Since 2009 PhD student at the Georg August University, Göttingen, Germany at the J. F. Blumenbach Insitute of Zoology and Anthropology under supervision of Prof. Dr. S. Scheu 2009-2010 Scientific officer at the Georg August University, Göttingen, Germany International Congress Contributions March 2008 Annual mesofauna meeting Vienna talk March 2009 DZG PhD meeting, Munich talk April 2009 Annual mesofauna meeting, Goettingen talk Curriculum Vitae March 2010 Annual mesofauna meeting, Innsbruck talk Other Experiences April/May 2007/08 Supervision of the alternative practical course for „Spezielle Zoologie‟ at Darmstadt University of Technology, Germany February 2010 Supervision of the practical course „Evolutionary Ecology‟ at Georg August University Göttingen, Germany Further supervision Jennifer Wilhein “Intraspezifische genetische Varianz bei Arten der Gattung Eupteryx (Cicadellidae/Typhlocybinae) in Deutschland“, Diploma thesis 2009 Darmstadt University of Technology, Germany Valerie Biewener “Thechniques in Molecular Biology”, research intership 2009/10 at Georg August University Göttingen, Germany Erik-Thor Hagenah “Thechniques in Molecular Biology”, research intership 2009/10 at Georg August University Göttingen, Germany Helge von Saltzwedel “Ecological niche differentiation of the parthenogenetic oribatid mite Oppiella nova (Acari, Oribatida) investigated by molecular markers”, Diploma thesis 2010 Darmstadt University of Technology, Germany Table of Contents Table of Contents Summary ................................................................................................................................................. I Zusammenfassung ................................................................................................................................. II Chapter One General Introduction ..................................................................................................... 2 1.1 Phylogeography ............................................................................................................................. 2 1.1.1 Ice ages ................................................................................................................................... 2 1.1.2 Cryptic refugia ....................................................................................................................... 3 1.1.3 Barcoding ............................................................................................................................... 3 1.1.4 Molecular markers ................................................................................................................. 3 1.2 Oribatid mites ................................................................................................................................ 4 1.3 Sex versus parthenogenesis ........................................................................................................... 6 1.4 Objectives ...................................................................................................................................... 7 Chapter Two Genetic diversity in a soil living microarthropod species: Cryptic species and reconstruction of the evolution of genetic complexity ........................................................................ 8 2.1 Introduction ................................................................................................................................... 9 2.2 Materials and methods................................................................................................................. 10 2.2.1 Taxon sampling .................................................................................................................... 10 2.2.2 DNA extraction and sequencing ........................................................................................... 12 2.2.3 Phylogeographic and population genetic analyses .............................................................. 12 2.3 Results ......................................................................................................................................... 13 2.3.1 Network ................................................................................................................................ 13 2.3.2 Phylogenetic and population genetic analyses ..................................................................... 20 2.4 Discussion ................................................................................................................................... 28 2.5 Conclusion ................................................................................................................................... 31 Chapter Three Is there a cryptic species complex in the oribatid mite Steganacarus magnus (Nicolet, 1855) (Acari, Oribatida)? .................................................................................................... 32 3.1 Introduction ................................................................................................................................. 33 3.2 Materials and methods................................................................................................................. 34 3.2.1 Taxon sampling .................................................................................................................... 34 3.2.2 DNA extraction and sequencing ........................................................................................... 35 3.2.3 Phylogenetic, population genetic and statistical analyses ................................................... 36 3.3 Results ......................................................................................................................................... 37 3.3.1 Phylogenetic analyses .......................................................................................................... 37 3.3.2 Network ................................................................................................................................ 43 3.3.3 Population genetic analyses ................................................................................................. 49 3.4 Discussion ................................................................................................................................... 52 i Table of Contents 3.5 Conclusions ................................................................................................................................. 53 Chapter Four Differential colonization of Europe by sexual and asexual oribatid mite species: post- and pre- ice age events ............................................................................................................... 54 4.1 Introduction ................................................................................................................................. 55 4.2 Materials and methods................................................................................................................. 56 4.2.1 Taxon sampling .................................................................................................................... 56 4.2.2 DNA extraction and sequencing ........................................................................................... 59 4.2.3 Phylogeographic, population genetic and statistical analyses ............................................ 59 4.3 Results ......................................................................................................................................... 60 4.3.1 Nothrus silvestris .................................................................................................................. 60 4.3.2 Platynothrus peltifer ............................................................................................................. 72 4.3.3 Achipteria coleoptrata .......................................................................................................... 86 4.3.4 Steganacarus magnus ........................................................................................................... 99 4.4 Discussion ................................................................................................................................
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