Chapter 5: Molecular Orbitals
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Resonance, and Formal Charge
3.091: Introduction to Solid State Chemistry Maddie Sutula, Fall 2018 Recitation 8 1 Resonance Often, there are many ways that electrons can be arranged around a molecule. The existence of multiple electronic configurations that are stable leads to resonance, which describes the delocalization of electrons in covalently bonded molecules. To be considered resonance structures, molecules must meet the following criteria: 1. Atoms must be in the same orientation relative to each other 2. All resonance structures must have the same number of valence electrons 3. The octet rule must be satisfied, with a few exceptions: - Not followed by some elements in periods three and higher, including Cl, Br, I, P, Si − - Sulfur can have up to 12 e − - Boron can have 6 e 4. Formal charge should be on the most electronegative atoms 2− Example: Draw resonance structures for ozone (O3) and CO3 . Ozone consists of three oxygen atoms, for a total of 18 valence electrons. These can be equivalently dis- tributed in two ways: 2− CO3 consists of a central carbon atom which brings 4 valence electrons, and four oxygen atoms that each bring 6 electrons, and two additional electrons that yield the additional 2− charge. The resonance structures can be represented as follows: These equivalent structures can be combined into one compact picture (shown above on the right) that is an average of the possible structures. All of the resonance structures are equally likely, as they equivalently satisfy the guidelines for stable Lewis structures. 1 3.091: Introduction to Solid State Chemistry Maddie Sutula, Fall 2018 Recitation 8 2 Formal charge (again) 2− In the CO3 example above, the formal charge on each atom is shown in circles. -
No Rabbit Ears on Water. the Structure of the Water Molecule
No Rabbit Ears on Water The Structure of the Water Molecule: What Should We Tell the Students? Michael Laing University of Natal. Durban, South Africa In the vast majority of high school (I)and freshman uni- He also considers the possibility of s character in the bond- versity (2) chemistry textbooks, water is presented as a bent ing orbitals of OF2 and OH2 to improve the "strength" of the molecule whose bonding can be described bv the Gilles~ie- orbital (p 111) from 1.732 for purep to 2.00 for the ideal sp3. Nyholm approach with the oxygen atomsp3 Gyhridized. The Inclusion of s character in the hybrid will be "resisted in the lone uairs are said to he dominant causine the H-O-H anele case of atoms with an nnshared pair.. in the s orbital, to beieduced from the ideal 1091120to 104' and are regul&ly which is more stable than the p orbitals" (p 120). Estimates shown as equivalent in shape and size even being described of the H-E-H angle range from 91.2 for AsH3 to 93.5O for as "rabbit ears" (3). Chemists have even been advised to Hz0. He once again ascribes the anomalies for Hz0 to "re- wear Mickey Mouse ears when teaching the structure and uulsion of the charzes of the hvdroaeu atoms" (D 122). bonding of the H20molecule, presumably to emphasize the - In his famous hook (6)~itac~oro&kii describks the bond- shape of the molecule (and possibly the two equivalent lone ing in water and HzS (p 10). -
Valence Bond Theory
UMass Boston, Chem 103, Spring 2006 CHEM 103 Molecular Geometry and Valence Bond Theory Lecture Notes May 2, 2006 Prof. Sevian Announcements z The final exam is scheduled for Monday, May 15, 8:00- 11:00am It will NOT be in our regularly scheduled lecture hall (S- 1-006). The final exam location has been changed to Snowden Auditorium (W-1-088). © 2006 H. Sevian 1 UMass Boston, Chem 103, Spring 2006 More announcements Information you need for registering for the second semester of general chemistry z If you will take it in the summer: z Look for chem 104 in the summer schedule (includes lecture and lab) z If you will take it in the fall: z Look for chem 116 (lecture) and chem 118 (lab). These courses are co-requisites. z If you plan to re-take chem 103, in the summer it will be listed as chem 103 (lecture + lab). In the fall it will be listed as chem 115 (lecture) + chem 117 (lab), which are co-requisites. z Note: you are only eligible for a lab exemption if you previously passed the course. Agenda z Results of Exam 3 z Molecular geometries observed z How Lewis structure theory predicts them z Valence shell electron pair repulsion (VSEPR) theory z Valence bond theory z Bonds are formed by overlap of atomic orbitals z Before atoms bond, their atomic orbitals can hybridize to prepare for bonding z Molecular geometry arises from hybridization of atomic orbitals z σ and π bonding orbitals © 2006 H. Sevian 2 UMass Boston, Chem 103, Spring 2006 Molecular Geometries Observed Tetrahedral See-saw Square planar Square pyramid Lewis Structure Theory -
Constrained Density Functional Theory
Constrained Density Functional Theory The MIT Faculty has made this article openly available. Please share how this access benefits you. Your story matters. Citation Kaduk, Benjamin, Tim Kowalczyk, and Troy Van Voorhis. “Constrained Density Functional Theory.” Chemical Reviews 112.1 (2012): 321–370. © 2012 American Chemical Society As Published http://dx.doi.org/ 10.1021/cr200148b Publisher American Chemical Society (ACS) Version Author's final manuscript Citable link http://hdl.handle.net/1721.1/74564 Terms of Use Article is made available in accordance with the publisher's policy and may be subject to US copyright law. Please refer to the publisher's site for terms of use. Constrained Density Functional Theory Benjamin Kaduk, Tim Kowalczyk and Troy Van Voorhis Department of Chemistry, Massachusetts Institute of Technology 77 Massachusetts Avenue, Cambridge MA 02139 May 2, 2011 Contents 1 Introduction 3 2 Theory 7 2.1 OriginalCDFTEquations ............................ 7 2.2 ConstrainedObservables . .. .. 9 2.3 ChoosingaConstraint .............................. 13 2.4 Implementation .................................. 18 2.5 Promolecules ................................... 24 2.6 Illustrations .................................... 28 2.6.1 MetalImpurities ............................. 28 2.6.2 Long-range Charge-Transfer Excited States . .... 32 2.7 FutureChallenges................................. 34 3 Application to Electron Transfer 36 3.1 Background:MarcusTheory. 36 3.2 DiabaticETStatesfromCDFT ......................... 39 3.2.1 Choosing Suitable Density Constraints for ET . 39 3.2.2 Illustrations ................................ 41 3.3 IncorporatingSolventEffects. .. 46 3.4 Molecular Dynamics and Free Energy Simulations . 49 3.5 RelatedandOngoingWork ........................... 54 4 Low-lying Spin States 57 4.1 TracingOutConstant-spinStates . .. 59 4.2 The Heisenberg Picture of Molecular Magnets . .. 63 4.3 Singlet-Triplet Gaps of Intermolecular CT States . -
1 5. Chemical Bonding
5. Chemical Bonding: The Covalent Bond Model 5.1 The Covalent Bond Model Almost all chemical substances are found as aggregates of atoms in the form of molecules and ions produced through the reactions of various atoms of elements except the noble-gas elements which are stable mono-atomic gases. Chemical bond is a term that describes the attractive force that is holding the atoms of the same or different kind of atoms in forming a molecule or ionic solid that has more stability than the individual atoms. Depending on the kinds of atoms participating in the interaction there seem to be three types of bonding: Gaining or Losing Electrons: Ionic bonding: Formed between many ions formed by metal and nonmetallic elements. Sharing Electrons: Covalent bonding: sharing of electrons between two atoms of non-metals. Metallic Bonding: sharing of electrons between many atoms of metals. Ionic Compounds Covalent Compounds Metallic Compounds 1. Metal and non-meal Non-metal and non-meal Metal of one type or, element combinations. elements combinations. combinations of two or metal elements combinations. 2. High melting brittle Gases, liquids, or waxy, low Conducting, high melting, crystalline solids. melting soft solids. malleable, ductile crystalline solids. 3. Do not conduct as a solid Do not conduct electricity at Conduct electricity at solid but conducts electricity any state. and molten states. when molten. 4. Dissolved in water produce Most are soluble in non-polar Insoluble in any type of conducting solutions solvents and few in water. solvents. (electrolytes) and few These solutions are non- are soluble in non-polar conducting (non- solvents. -
Chemical Forces Understanding the Relative Melting/Boiling Points of Two
Chapter 8 – Chemical Forces Understanding the relative melting/boiling points of two substances requires an understanding of the forces acting between molecules of those substances. These intermolecular forces are important for many additional reasons. For example, solubility and vapor pressure are governed by intermolecular forces. The same factors that give rise to intermolecular forces (e.g. bond polarity) can also have a profound impact on chemical reactivity. Chemical Forces Internuclear Distances and Atomic Radii There are four general methods of discussing interatomic distances: van der Waal’s, ionic, covalent, and metallic radii. We will discuss the first three in this section. Each has a unique perspective of the nature of the interaction between interacting atoms/ions. Van der Waal's Radii - half the distance between two nuclei of the same element in the solid state not chemically bonded together (e.g. solid noble gases). In general, the distance of separation between adjacent atoms (not bound together) in the solid state should be the sum of their van der Waal’s radii. F F van der Waal's radii F F Ionic Radii – Ionic radii were discussed in Chapter 4 and you should go back and review that now. One further thing is worth mentioning here. Evidence that bonding really exists and is attractive can be seen in ionic radii. For all simple ionic compounds, the ions attain noble gas configurations (e.g. in NaCl the Na+ ion is isoelectronic to neon and the Cl- ion is isoelectronic to argon). For the sodium chloride example just given, van der Waal’s radii would predict (Table 8.1, p. -
Lewis Structure Handout
Lewis Structure Handout for Chemistry Students An electron dot diagram, also known as a Lewis Structure, is a representation of valence electrons in a single atom, and can be further utilized to depict the bonds that form based on the available electrons for covalent bonding between multiple atoms. -Each atom has a characteristic dot diagram based on its position in the periodic table and this reflects its potential for fulfillment of the octet rule. As a general rule, the noble gases have a filled octet (column VIII with eight valence electrons) and each preceding column has successively one fewer. • For example, Carbon is in column IV and has four valence electrons. It can therefore be represented as: • Each of these "lone" electrons can form a bond by sharing the orbital with another unbonded electron. Hydrogen, being in column I, has a single valence electron, and will therefore satisfy carbon's octet thusly: • When a compound has bonded electrons (as with CH4) it is most accurate to diagram it with lines representing each of the single bonds. • Using carbon again for a slightly more complicated example, it can also form double bonds. This is the case when carbon bonds to two oxygen atoms, resulting in CO2. The oxygen atoms (with six valence electrons in column VI) are each represented as: • Because carbon is the least electronegative of the atoms involved, it is placed centrally, and its valence electrons will migrate toward the more electronegative oxygens to form two double bonds and a linear structure. This can be written as: where oxygen's remaining lone pairs are still shown. -
Chapter Eleven: Chemical Bonding
© Adrian Dingle’s Chemistry Pages 2004, 2005, 2006, 2007, 2008, 2009, 2010, 2011, 2012. All rights reserved. These materials may NOT be copied or redistributed in any way, except for individual class instruction. Revised August 2011 AP TOPIC 8: Chemical Bonding Introduction In the study of bonding we will consider several different types of chemical bond and some of the theories associated with them. TYPES OF BONDING INTRA INTER (Within (inside) compounds) (Interactions between the STRONG molecules of a compound) WEAK Ionic Covalent Hydrogen Bonding Dipole-Dipole London Dispersion (Metal + Non-metal) (Non-metals) (H attached to N, O or F) (Polar molecules) Forces Giant lattice of ions Discrete molecules Strong, permanent dipole Permanent dipoles (Non-polar molecules) Induced dipoles Dative or (Co-ordinate) (Electron deficient species) Discrete molecules To help distinguish the difference in strength of intra and inter bonds consider the process of boiling of water. When water boils the product is steam (gaseous water). The products are not hydrogen and oxygen. This is because the weak inter molecular forces are broken not the much stronger intra molecular forces. C:\Documents and Settings\AdrianD\My Documents\Dropbox\ADCP\apnotes08.doc Page 1 of 26 © Adrian Dingle’s Chemistry Pages 2004, 2005, 2006, 2007, 2008, 2009, 2010, 2011, 2012. All rights reserved. These materials may NOT be copied or redistributed in any way, except for individual class instruction. Revised August 2011 Intra Bonding Ionic (the transfer of electrons between atoms to form ions that form giant ionic lattices) Atoms have equal numbers of protons and electrons and consequently have no overall charge. -
Formal Charge Worksheet / Chem 314 Beauchamp
Formal Charge Worksheet / Chem 314 Beauchamp Formal Charge – a convention designed to indicate an excess or deficiency of electron density compared to an atom’s neutral allocation of electrons. Formal electrons in 1 electrons in Charge =Zeffective lone pairs 2 covalent bonds This number never changes for an atom and represents positive Total valence electrons allocated to an atom charge not cancelled assuming electrons are shared evenly in bonds. by core electrons. This number varies depending on the bonding arrangement. It is negative because electrons are negative. Rules of Formal Charge 1. When an atom’s total valence electron credit exactly matches its Zeff, there is no formal charge. 2. Each deficiency of an electron credit from an atom’s normal number of valence electrons produces an additional positive charge. 3. If the formal charge calculation shows excess electron credit over an atom’s normal number of valence electrons, a negative formal charge is added for each extra electron. 4. The total charge on an entire molecule, ion or free radical is the sum of all of the formal charges on the individual atoms. Write 3D structures for all resonance contributors. Rank them from best (=1) to last. Judge your structures on the basis of 1. maximum number of bonds / full octets, 2. minimize formal charge, 3, consistent formal charge based on electronegativity. Cations a. b. c. d. e. f. H COH 2 H2CNH2 (CH3)2COH (CH3)2CNHCH3 (CH3)2CCH2CH3 H2CCOH 2 resonance 2 resonance 2 resonance 2 resonance 2 resonance structures structures structures structures structures g. h. i. j. -
Molecular Orbital Theory to Predict Bond Order • to Apply Molecular Orbital Theory to the Diatomic Homonuclear Molecule from the Elements in the Second Period
Skills to Develop • To use molecular orbital theory to predict bond order • To apply Molecular Orbital Theory to the diatomic homonuclear molecule from the elements in the second period. None of the approaches we have described so far can adequately explain why some compounds are colored and others are not, why some substances with unpaired electrons are stable, and why others are effective semiconductors. These approaches also cannot describe the nature of resonance. Such limitations led to the development of a new approach to bonding in which electrons are not viewed as being localized between the nuclei of bonded atoms but are instead delocalized throughout the entire molecule. Just as with the valence bond theory, the approach we are about to discuss is based on a quantum mechanical model. Previously, we described the electrons in isolated atoms as having certain spatial distributions, called orbitals, each with a particular orbital energy. Just as the positions and energies of electrons in atoms can be described in terms of atomic orbitals (AOs), the positions and energies of electrons in molecules can be described in terms of molecular orbitals (MOs) A particular spatial distribution of electrons in a molecule that is associated with a particular orbital energy.—a spatial distribution of electrons in a molecule that is associated with a particular orbital energy. As the name suggests, molecular orbitals are not localized on a single atom but extend over the entire molecule. Consequently, the molecular orbital approach, called molecular orbital theory is a delocalized approach to bonding. Although the molecular orbital theory is computationally demanding, the principles on which it is based are similar to those we used to determine electron configurations for atoms. -
Introduction to Molecular Orbital Theory
Chapter 2: Molecular Structure and Bonding Bonding Theories 1. VSEPR Theory 2. Valence Bond theory (with hybridization) 3. Molecular Orbital Theory ( with molecualr orbitals) To date, we have looked at three different theories of molecular boning. They are the VSEPR Theory (with Lewis Dot Structures), the Valence Bond theory (with hybridization) and Molecular Orbital Theory. A good theory should predict physical and chemical properties of the molecule such as shape, bond energy, bond length, and bond angles.Because arguments based on atomic orbitals focus on the bonds formed between valence electrons on an atom, they are often said to involve a valence-bond theory. The valence-bond model can't adequately explain the fact that some molecules contains two equivalent bonds with a bond order between that of a single bond and a double bond. The best it can do is suggest that these molecules are mixtures, or hybrids, of the two Lewis structures that can be written for these molecules. This problem, and many others, can be overcome by using a more sophisticated model of bonding based on molecular orbitals. Molecular orbital theory is more powerful than valence-bond theory because the orbitals reflect the geometry of the molecule to which they are applied. But this power carries a significant cost in terms of the ease with which the model can be visualized. One model does not describe all the properties of molecular bonds. Each model desribes a set of properties better than the others. The final test for any theory is experimental data. Introduction to Molecular Orbital Theory The Molecular Orbital Theory does a good job of predicting elctronic spectra and paramagnetism, when VSEPR and the V-B Theories don't. -
8.3 Bonding Theories >
8.3 Bonding Theories > Chapter 8 Covalent Bonding 8.1 Molecular Compounds 8.2 The Nature of Covalent Bonding 8.3 Bonding Theories 8.4 Polar Bonds and Molecules 1 Copyright © Pearson Education, Inc., or its affiliates. All Rights Reserved. 8.3 Bonding Theories > Molecular Orbitals Molecular Orbitals How are atomic and molecular orbitals related? 2 Copyright © Pearson Education, Inc., or its affiliates. All Rights Reserved. 8.3 Bonding Theories > Molecular Orbitals • The model you have been using for covalent bonding assumes the orbitals are those of the individual atoms. • There is a quantum mechanical model of bonding, however, that describes the electrons in molecules using orbitals that exist only for groupings of atoms. 3 Copyright © Pearson Education, Inc., or its affiliates. All Rights Reserved. 8.3 Bonding Theories > Molecular Orbitals • When two atoms combine, this model assumes that their atomic orbitals overlap to produce molecular orbitals, or orbitals that apply to the entire molecule. 4 Copyright © Pearson Education, Inc., or its affiliates. All Rights Reserved. 8.3 Bonding Theories > Molecular Orbitals Just as an atomic orbital belongs to a particular atom, a molecular orbital belongs to a molecule as a whole. • A molecular orbital that can be occupied by two electrons of a covalent bond is called a bonding orbital. 5 Copyright © Pearson Education, Inc., or its affiliates. All Rights Reserved. 8.3 Bonding Theories > Molecular Orbitals Sigma Bonds When two atomic orbitals combine to form a molecular orbital that is symmetrical around the axis connecting two atomic nuclei, a sigma bond is formed. • Its symbol is the Greek letter sigma (σ).