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Anchialine Cave Biology in the Era of Speleogenomics Jorge L
International Journal of Speleology 45 (2) 149-170 Tampa, FL (USA) May 2016 Available online at scholarcommons.usf.edu/ijs International Journal of Speleology Off icial Journal of Union Internationale de Spéléologie Life in the Underworld: Anchialine cave biology in the era of speleogenomics Jorge L. Pérez-Moreno1*, Thomas M. Iliffe2, and Heather D. Bracken-Grissom1 1Department of Biological Sciences, Florida International University, Biscayne Bay Campus, North Miami FL 33181, USA 2Department of Marine Biology, Texas A&M University at Galveston, Galveston, TX 77553, USA Abstract: Anchialine caves contain haline bodies of water with underground connections to the ocean and limited exposure to open air. Despite being found on islands and peninsular coastlines around the world, the isolation of anchialine systems has facilitated the evolution of high levels of endemism among their inhabitants. The unique characteristics of anchialine caves and of their predominantly crustacean biodiversity nominate them as particularly interesting study subjects for evolutionary biology. However, there is presently a distinct scarcity of modern molecular methods being employed in the study of anchialine cave ecosystems. The use of current and emerging molecular techniques, e.g., next-generation sequencing (NGS), bestows an exceptional opportunity to answer a variety of long-standing questions pertaining to the realms of speciation, biogeography, population genetics, and evolution, as well as the emergence of extraordinary morphological and physiological adaptations to these unique environments. The integration of NGS methodologies with traditional taxonomic and ecological methods will help elucidate the unique characteristics and evolutionary history of anchialine cave fauna, and thus the significance of their conservation in face of current and future anthropogenic threats. -
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Last Name of Authors Examples: Smith Smith & Meyer Smith et al. GUIDELINES FOR MANUSCRIPT PREPARATION Journal Scope. Speleobiology Notes specializes on brief observations on the natural history of subterranean organisms, such as predation events, episodes of reproduction, occurrence in unusual habitats or microhabitats, localized population extinctions, range extensions, new records of species at a given location, and many other natural history phenomena. The journal aims to serve as the primary outlet for much interesting and important information on subterranean fauna contained in the field notes of many speleobiologists, information deemed too fragmented, too brief, too basic, or simply too irrelevant to be included within full-length, traditional scientific journal articles. General Formatting. Manuscripts must be in English. If English is not your native language, please have your manuscript reviewed by a native English-speaking person(s). Manuscripts should be limited to 2500 words or less (not including title, authors and affiliations, key words, and literature cited). The manuscript file should be saved in the native format of the word processing software used (please save as .doc or .docx). To avoid unnecessary errors, you are strongly encouraged to use the ʻspell- checkʼ and ʻgrammar-checkʼ features of your word processing software. The text should be in single-column format. The manuscript should be single-spaced with 2.54 cm (1 inch) margins and 12-point Helvetica font (unless noted otherwise below). For review purposes, please include consecutive page numbers in the page footer and use continuous line numbering throughout the document. Present tables and figure legends on separate pages at the end of the manuscript. -
Evolutionary History of Inversions in the Direction of Architecture-Driven
bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Evolutionary history of inversions in the direction of architecture- driven mutational pressures in crustacean mitochondrial genomes Dong Zhang1,2, Hong Zou1, Jin Zhang3, Gui-Tang Wang1,2*, Ivan Jakovlić3* 1 Key Laboratory of Aquaculture Disease Control, Ministry of Agriculture, and State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China. 2 University of Chinese Academy of Sciences, Beijing 100049, China 3 Bio-Transduction Lab, Wuhan 430075, China * Corresponding authors Short title: Evolutionary history of ORI events in crustaceans Abbreviations: CR: control region, RO: replication of origin, ROI: inversion of the replication of origin, D-I skew: double-inverted skew, LBA: long-branch attraction bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Abstract Inversions of the origin of replication (ORI) of mitochondrial genomes produce asymmetrical mutational pressures that can cause artefactual clustering in phylogenetic analyses. It is therefore an absolute prerequisite for all molecular evolution studies that use mitochondrial data to account for ORI events in the evolutionary history of their dataset. -
Bibliography-Of-Texas-Speleology
1. Anonymous. n.d. University of Texas Bulletin No. 4631, pp. 51. 2. Anonymous. 1992. Article on Pendejo Cave. Washington Post, 10 February 1992. 3. Anonymous. 1992. Article on bats. Science News, 8 February 1992. 4. Anonymous. 2000. National Geographic, 2000 (December). 5. Anonymous. n.d. Believe odd Texas caves is Confederate mine; big rock door may be clue to mystery. 6. Anonymous. n.d. The big dig. Fault Zone, 4:8. 7. Anonymous. n.d. Cannibals roam Texas cave. Georgetown (?). 8. Anonymous. n.d. Cavern under highway is plugged by road crew. Source unknown. 9. Anonymous. n.d. Caverns of Sonora: Better Interiors. Olde Mill Publ. Co., West Texas Educators Credit Union. 10. Anonymous. n.d. Crawling, swimming spelunkers discover new rooms of cave. Austin(?). Source unknown. 11. Anonymous. n.d. Discovery (of a sort) in Airmen's Cave. Fault Zone, 5:16. 12. Anonymous. n.d. Footnotes. Fault Zone, 5:13. 13. Anonymous. n.d. Help the blind... that is, the Texas blind salamander [Brochure]: Texas Nature Conservancy. 2 pp. 14. Anonymous. n.d. Honey Creek map. Fault Zone, 4:2. 15. Anonymous. n.d. The Langtry mini-project. Fault Zone, 5:3-5. 16. Anonymous. n.d. Neuville or Gunnels Cave. http:// www.shelbycountytexashistory.org/neuvillecave.htm [accessed 9 May 2008]. 17. Anonymous. n.d. Palo Duro Canyon State Scenic Park. Austin: Texas Parks and Wildlife Department. 2 pp. 18. Anonymous. n.d. Texas blind salamander (Typhlomolge rathbuni). Mississippi Underground Dispatch, 3(9):8. 19. Anonymous. n.d. The TSA at Cascade Caverns. Fault Zone, 4:1-3, 7-8. -
Lazare Botosaneanu ‘Naturalist’ 61 Doi: 10.3897/Subtbiol.10.4760
Subterranean Biology 10: 61-73, 2012 (2013) Lazare Botosaneanu ‘Naturalist’ 61 doi: 10.3897/subtbiol.10.4760 Lazare Botosaneanu ‘Naturalist’ 1927 – 2012 demic training shortly after the Second World War at the Faculty of Biology of the University of Bucharest, the same city where he was born and raised. At a young age he had already showed interest in Zoology. He wrote his first publication –about a new caddisfly species– at the age of 20. As Botosaneanu himself wanted to remark, the prominent Romanian zoologist and man of culture Constantin Motaş had great influence on him. A small portrait of Motaş was one of the few objects adorning his ascetic office in the Amsterdam Museum. Later on, the geneticist and evolutionary biologist Theodosius Dobzhansky and the evolutionary biologist Ernst Mayr greatly influenced his thinking. In 1956, he was appoint- ed as a senior researcher at the Institute of Speleology belonging to the Rumanian Academy of Sciences. Lazare Botosaneanu began his career as an entomologist, and in particular he studied Trichoptera. Until the end of his life he would remain studying this group of insects and most of his publications are dedicated to the Trichoptera and their environment. His colleague and friend Prof. Mar- cos Gonzalez, of University of Santiago de Compostella (Spain) recently described his contribution to Entomolo- gy in an obituary published in the Trichoptera newsletter2 Lazare Botosaneanu’s first contribution to the study of Subterranean Biology took place in 1954, when he co-authored with the Romanian carcinologist Adriana Damian-Georgescu a paper on animals discovered in the drinking water conduits of the city of Bucharest. -
CURRICULUM VITAE Stephen M
CURRICULUM VITAE Stephen M. Shuster Updated: 25 September 2012 Present Address: Department of Biological Sciences, Northern Arizona University; Box 5640, Flagstaff, AZ 86011-5640 Telephone: office: (928) 523-9302, 523-2381; laboratory: (928) 523-4641; FAX: (928) 523-7500; Email: [email protected]; Webpage: http://www4.nau.edu/isopod/ Education: Ph.D. Department of Zoology, University of California, Berkeley, 1987. M.S. Department of Biology, University of New Mexico, Albuquerque, 1979. B.S. Department of Zoology, University of Michigan, Ann Arbor, 1976. Academic Positions 2001-Present Professor of Invertebrate Zoology; Curator of Marine Invertebrates and Molluscs, Department of Biological Sciences, Northern Arizona University. 1995-2001 Associate Professor, Department of Biological Sciences, Northern Arizona University. 1990-95 Assistant Professor, Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ. 1987-88 Visiting Assistant Professor, Department of Biology, University of California, Riverside, CA. 1979-81 Academic Instructor, Department of Biology, University of Albuquerque, Albuquerque, NM. 1979 Program Specialist and Instructor, Human Anatomy and Physiology, Presbyterian Hospital School of Nursing, Albuquerque, NM. Postdoctoral Research Experience 1988-90 NIH grant GM 22523-14, Post-doctoral Research Associate with Dr. Michael J. Wade, "Evolution in structured populations." University of Chicago. 1987-88 NSF grant BSR 87-00112, Post-doctoral Research Associate with Dr. Clay A. Sassaman, "A genetic analysis of male alternative reproductive behaviors in a marine isopod crustacean," University of California, Riverside. Fellowships and Grants ($7.1M since 1990): 2012 NAU Interns to Scholars Program, One student supported. 2012 Global Course Development Support, “A Field Course in Saipan,” Northern Arizona University, $4.5K. 2011 Global Learning Initiative Grant, “Research Internships at the University of Bordeaux, France,” Northern Arizona University, Co-PIs Patricia Frederick. -
Hadzioidea of the NEP (Equator to Aleutians, Intertidal to Abyss): a Review Donald B
Hadzioidea of the NEP (Equator to Aleutians, intertidal to abyss): a review Donald B. Cadien 31 August 2005 (revised 11Oct 2007) Introduction to the Hadzioidea The superfamily was originally constituted as the Melitoidea (Bousfield 1977). This concept was critiqued by J. L. Barnard and Karaman (1980), and in response Bousfield renamed the group Hadzioidea without changing its composition (Bousfield 1983). Only three families are included in this superfamily, although one of them (Hadziidae) is further divided into three unofficial groups – weckeliids, hadziids, and nuuanids. These were originally included in the broad concept of the gammaroids, but have been separated for several decades. The taxonomic position suggested by Bousfield (2001)is used here, but Barnard and Karaman and others retained them as several groups within the gammaroids s. l.. The discussion of the hadzioids in J. L. Barnard & C. M. Barnard (1983, pp. 137-140, and as “Melita Group” pp. 147-151) may help show how members of this superfamily differ from other gammaroids, and from each other. The first family in the superfamily, the Allocrangonyctidae is confined to freshwater and is not covered here. The remaining two, Hadziidae and Melitidae, are primarily marine, and are both represented in the NEP. Maera sp an undescribed species from Guana Island (Photo Yale Peabody Museum) Diagnosis of the Hadzioidea – “body not carinate nor rostrate, toothed on abdomen only (rarely on peraeon): urosome dorsal spine groups weak or lacking; sexual dimorphism strongly expressed in body size and in gnathopods, and in antenna 2 and peraeopods; antennae 2 lacking calceoli; antennae strongly developed, 1 usually much the longer, peduncular segment 2 elongate; accessory flagellum prominent (occasionally very reduced or lacking); inferior antennal sinus small or sharply incised; eye (when present) basically small, rounded, occasionally reniform. -
MADISON CAVE ISOPOD (Antrolana Lira)
MADISON CAVE ISOPOD (Antrolana lira) RECOVERY PLAN U.S. Fish and Wildlife Service Hadley, Massachusetts MADISON CAVE ISOPOD (Antrolana lira) RECOVERY PLAN Prepared by: Daniel W. Fong Department ofBiology The American University Washington, D.C. for: U.S. Fish and Wildlife Sen’ice Northeast Region Hadley, Massachusetts Approved: Regional Direct , Northeast Region U.S. Fish and Wildlife Service Date: EXECUTIVE SUMMARY Madison Cave Isopod~t Recovery Plan CuRRENT STATUS: The Madison Cave isopod, Antrolana lira, is a subterranean freshwater crustacean endemic tothe Shenandoah Valley in Virginia. Thismonotypic genus is the only member ofthe family Cirolanidae found north of Texas. Until 1990,A. lira was known onlyfrom two sites, Madison Saltpetre Cave and a fissure near the cave; since June 1990, the isopod has been collectedfrom five additional sites. Althoughspecimens from all sevensites are morphologically identical, they probably represent more than one but less than seven genetic populations. Population size appears tobe extremely small at five ofthe species’ sevenoccurrence sites. The Madison Cave isopod was listed as a threatened species inNovember 1982. Urban and agricultural development threatens the quality of its groundwater habitat and thus its survival; inaddition, lack ofknowledge ofthe basic ecology ofthis isopod hinders the development ofplans for its management and protection. LIMrrING FACTORS AND HABrrATREQumxMErrrs: The Madison Cave isopod appears to have low reproductive potential, and the small population size at most ofits sitesindicates that it is highly sensitive to disturbance. The species, which is difficult to study and collect, is known only from areas where fissures descend to the groundwater table, thus allowing access to the surface ofunderground lakes, or deep karst aquifers. -
Three New Troglobitic Asellids from Western North America (Crustacea: Isopoda: Asellidael
Int. J. Speleol. 7 (1975) pp. 339-356. Three New Troglobitic Asellids from Western North America (Crustacea: Isopoda: Asellidael by Thomas E. BOWMAN* Troglobitic isopods of the family Asellidae, comprising about 42 species (Fleming, 1973), are widespread in the eastern United States, mostly in non-glaciated areas, but extending into some glaciated parts of Illinois and Indiana. To the west, tro- globitic asellids range to central Kansas, Oklahoma and Texas. West of this area, if we exclude the 4 Mexican species of Mexistenasellus (Cole and Minckley, 1972; Magniez, 1972; Argano, 1973) which belong to a separate family, Stenasellidae (Henry and Magniez, 1968, 1970), only 2 troglobitic asellids are known from North America: Asellus cali/amicus Miller (1933) from northern California and Canasellus pasquinii Argano (1972) from Veracruz state, Mexico. The 3 new species of- western troglobitic asellids described herein extend the records of blind asellids in North America south to Chiapas state, Mexico, and north to central Alberta, Canada (ca. 53°N), and add a second species from Califor- nia. The new species from Chiapas is very similar to Canasellus pasquinii Argano (1972); the new asellids from Alberta and California show no close affinities with known species. The generic status of North American species of Asellus is still unsettled. Henry and Magniez (1970) divided the species between Canasellus Stammer (1932) and Pseudabaicalasellus Henry and Magniez (1968) except A. tamalensis Harford and A. cali/amicus Miller, which they believed to be closely related to far-eastern forms belonging to Asellus (Asellus) and Nippanasellus Matsumoto (1962). I have indi- cated that this is unlikely for A. -
A Checklist and Annotated Bibliography of the Subterranean Aquatic Fauna of Texas
A CHECKLIST AND ANNOTATED BIBLIOGRAPHY OF THE SUBTERRANEAN AQUATIC FAUNA OF TEXAS JAMES R. REDDELL and ROBERT W. MITCHELL Texas Technological College WATER RESOURCES \ CENTER Lubbock, Texas WRC 69-6 INTERNATIONAL CENTER for ARID and August 1969 SEMI-ARID LAND STUDIES A CHECKLIST AND ANNOTATED BIBLIOGRAPHY OF THE SUBTERRANEAN AQUATIC FAUNA OF TEXAS James R. Reddell and Robert W. Mitchell Department of Biology Texas Tech University Lubbock, Texas INTRODUCTION In view of the ever-increasing interest in all studies relating to the water resources of Texas, we have found it timely to prepare this guide to the fauna and biological literature of our subterranean waters. The value of such a guide has already been demonstrated by Clark (1966) in his "Publications, Personnel, and Government Organizations Related to the Limnology, Aquatic Biology and Ichthyology of the Inland Waters of Texas". This publication dea ls primarily with inland surface waters, however, barely touching upon the now rather extensive literature which has accumulated on the biology of our subterranean waters. To state a n obvious fact, it is imperative that our underground waters receive the attention due them. They are one of our most important resources. Those subterranean waters for which biological data exi st are very un equally distributed in the state. The best known are those which are acces sible to collection and study via the entrances of caves. Even in cavernous regions there exist inaccessible deep aquifers which have yielded little in formation as yet. Biological data from the underground waters of non-cave rn ous areas are virtually non-existant. -
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Contributions to Zoology 88 (2019) 452-497 CTOZ brill.com/ctoz The role of allopatric speciation and ancient origins of Bathynellidae (Crustacea) in the Pilbara (Western Australia): two new genera from the De Grey River catchment Giulia Perina Centre for Ecosystem Management, School of Science, Edith Cowan University, 270 Joondalup Dv, Joondalup, WA 6027, Australia Western Australian Museum, Locked Bag 49, Welshpool DC, Western Australia 6986, Australia [email protected] Ana I. Camacho Museo Nacional de Ciencias Naturales (CSIC), Dpto. Biodiversidad y Biología Evolutiva C/ José Gutiérrez Abascal 2, 28006-Madrid, Spain Joel Huey Centre for Ecosystem Management, School of Science, Edith Cowan University, 270 Joondalup Dv, Joondalup, WA 6027, Australia Western Australian Museum, Locked Bag 49, Welshpool DC, Western Australia 6986, Australia The University of Western Australia, 35 Stirling Hwy, Crawley WA 6009, Australia Pierre Horwitz Centre for Ecosystem Management, School of Science, Edith Cowan University, 270 Joondalup Dv, Joondalup, WA 6027, Australia Annette Koenders Centre for Ecosystem Management, School of Science, Edith Cowan University, 270 Joondalup Dv, Joondalup, WA 6027, Australia Abstract The stygofaunal family of Bathynellidae, is an excellent group to study the processes that shape diversity and distribution, since they have unknown surface or marine relatives, high level of endemism, and limited dispersal abilities. Recent research on Bathynellidae in Western Australia (Pilbara) has uncovered new taxa with unexpected distributions and phylogenetic relationships, but the biogeographical processes that drive their diversification on the continent are still unclear. By exploring the diversity, distribution, and © Perina et al., 2019 | doi:10.1163/18759866-20191412 This is an open access article distributed under the terms of the cc-by 4.0 License. -
BORON of Aquatic Life
Canadian Water Quality Guidelines for the Protection BORON of Aquatic Life oron (CAS Registry Number 7440-42-8) is The wet deposition of boron over the continents is ubiquitous in the environment, occurring estimated to be approximately 0.50 Tg B/yr, where Bnaturally in over 80 minerals and constituting rainwater from continental sites contains less boron 0.001% of the Earth’s crust (U.S. EPA, 1987). The when compared to boron from coastal and marine sites chemical symbol for Boron is B with an atomic weight (Park and Schlesinger, 2002).Natural weathering of 10.81 g mol-1 (Budavari et al., 1989; Weast, 1985; (chemical and mechanical) of boron-containing rocks is Lide, 2000; Clayton and Clayton, 1982; Sax, 1984; a major source of boron compounds in water Windholz, 1983; Moss and Nagpal, 2003). Boron is not (Butterwick et al., 1989) and on land (Park and found as a free element in nature. Schlesinger, 2002). The amount of boron released into the aquatic environment varies greatly depending on the Sources to the environment: The highest concentrations surrounding geology. Boron compounds also are of boron are found in sediments and sedimentary rock, released to water in municipal sewage and in waste particularly in clay rich marine sediments. The high waters from coal-burning power plants, irrigation, boron concentration in seawater (4.5 mg B L-1), ensures copper smelters and industries using boron (ATSDR, that marine clays are rich in boron relative to other rock 1992; Howe, 1998). With respect to Canadian types (Butterwick et al., 1989). The most significant wastewater discharges, a literature review was source of boron is seasalt aerosols, where annual input conducted to characterize the state of knowledge of of boron to the atmosphere is estimated to be 1.44 Tg B municipal effluent (Hydromantis Inc., 2005).