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Anchialine Cave Biology in the Era of Speleogenomics Jorge L
International Journal of Speleology 45 (2) 149-170 Tampa, FL (USA) May 2016 Available online at scholarcommons.usf.edu/ijs International Journal of Speleology Off icial Journal of Union Internationale de Spéléologie Life in the Underworld: Anchialine cave biology in the era of speleogenomics Jorge L. Pérez-Moreno1*, Thomas M. Iliffe2, and Heather D. Bracken-Grissom1 1Department of Biological Sciences, Florida International University, Biscayne Bay Campus, North Miami FL 33181, USA 2Department of Marine Biology, Texas A&M University at Galveston, Galveston, TX 77553, USA Abstract: Anchialine caves contain haline bodies of water with underground connections to the ocean and limited exposure to open air. Despite being found on islands and peninsular coastlines around the world, the isolation of anchialine systems has facilitated the evolution of high levels of endemism among their inhabitants. The unique characteristics of anchialine caves and of their predominantly crustacean biodiversity nominate them as particularly interesting study subjects for evolutionary biology. However, there is presently a distinct scarcity of modern molecular methods being employed in the study of anchialine cave ecosystems. The use of current and emerging molecular techniques, e.g., next-generation sequencing (NGS), bestows an exceptional opportunity to answer a variety of long-standing questions pertaining to the realms of speciation, biogeography, population genetics, and evolution, as well as the emergence of extraordinary morphological and physiological adaptations to these unique environments. The integration of NGS methodologies with traditional taxonomic and ecological methods will help elucidate the unique characteristics and evolutionary history of anchialine cave fauna, and thus the significance of their conservation in face of current and future anthropogenic threats. -
Evolutionary History of Inversions in the Direction of Architecture-Driven
bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Evolutionary history of inversions in the direction of architecture- driven mutational pressures in crustacean mitochondrial genomes Dong Zhang1,2, Hong Zou1, Jin Zhang3, Gui-Tang Wang1,2*, Ivan Jakovlić3* 1 Key Laboratory of Aquaculture Disease Control, Ministry of Agriculture, and State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China. 2 University of Chinese Academy of Sciences, Beijing 100049, China 3 Bio-Transduction Lab, Wuhan 430075, China * Corresponding authors Short title: Evolutionary history of ORI events in crustaceans Abbreviations: CR: control region, RO: replication of origin, ROI: inversion of the replication of origin, D-I skew: double-inverted skew, LBA: long-branch attraction bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Abstract Inversions of the origin of replication (ORI) of mitochondrial genomes produce asymmetrical mutational pressures that can cause artefactual clustering in phylogenetic analyses. It is therefore an absolute prerequisite for all molecular evolution studies that use mitochondrial data to account for ORI events in the evolutionary history of their dataset. -
Hadzioidea of the NEP (Equator to Aleutians, Intertidal to Abyss): a Review Donald B
Hadzioidea of the NEP (Equator to Aleutians, intertidal to abyss): a review Donald B. Cadien 31 August 2005 (revised 11Oct 2007) Introduction to the Hadzioidea The superfamily was originally constituted as the Melitoidea (Bousfield 1977). This concept was critiqued by J. L. Barnard and Karaman (1980), and in response Bousfield renamed the group Hadzioidea without changing its composition (Bousfield 1983). Only three families are included in this superfamily, although one of them (Hadziidae) is further divided into three unofficial groups – weckeliids, hadziids, and nuuanids. These were originally included in the broad concept of the gammaroids, but have been separated for several decades. The taxonomic position suggested by Bousfield (2001)is used here, but Barnard and Karaman and others retained them as several groups within the gammaroids s. l.. The discussion of the hadzioids in J. L. Barnard & C. M. Barnard (1983, pp. 137-140, and as “Melita Group” pp. 147-151) may help show how members of this superfamily differ from other gammaroids, and from each other. The first family in the superfamily, the Allocrangonyctidae is confined to freshwater and is not covered here. The remaining two, Hadziidae and Melitidae, are primarily marine, and are both represented in the NEP. Maera sp an undescribed species from Guana Island (Photo Yale Peabody Museum) Diagnosis of the Hadzioidea – “body not carinate nor rostrate, toothed on abdomen only (rarely on peraeon): urosome dorsal spine groups weak or lacking; sexual dimorphism strongly expressed in body size and in gnathopods, and in antenna 2 and peraeopods; antennae 2 lacking calceoli; antennae strongly developed, 1 usually much the longer, peduncular segment 2 elongate; accessory flagellum prominent (occasionally very reduced or lacking); inferior antennal sinus small or sharply incised; eye (when present) basically small, rounded, occasionally reniform. -
Hays County Regional Habitat Conservation Plan Final HCP
APPENDIX A Mapping Potential Golden-cheeked Warbler Breeding Habitat Using Remotely Sensed Forest Canopy Cover Data Loomis Partners, Inc. (2008) Hays County Regional Habitat Conservation Plan Mapping Potential Golden-cheeked Warbler Breeding Habitat Using Remotely Sensed Forest Canopy Cover Data Prepared for: County of Hays 111 E. San Antonio Street San Marcos, Texas 78666 Prepared by: ENGINEERING, LAND SURVEYING & ENVIRONMENTAL CONSULTING 3101 Bee Cave Road, Suite 100 Austin, TX 78746 512/327-1180 FAX: 512/327-4062 LAI Proj. No. 051001 August 12, 2008 Mapping Potential GCW Habitat LAI Proj. No. 051001 Table of Contents 1.0 INTRODUCTION..................................................................................................................................1 1.1 PURPOSE AND OBJECTIVES........................................................................................................................1 1.2 GOLDEN-CHEEKED WARBLER...................................................................................................................1 1.3 NATIONAL LAND COVER DATABASE 2001 ...............................................................................................3 2.0 METHODS .............................................................................................................................................3 2.1 HABITAT MAPPING ...................................................................................................................................3 2.2 PROBABILITY OF OCCUPANCY ANALYSIS .................................................................................................5 -
The Subterranean Fauna of Barrow Island, North-Western Australia: 10 Years On
RECORDS OF THE WESTERN AUSTRALIAN MUSEUM 83 145–158 (2013) SUPPLEMENT The subterranean fauna of Barrow Island, north-western Australia: 10 years on Garth Humphreys1,2,3,8, Jason Alexander1, Mark S. Harvey2,3,4,5,6 and William F. Humphreys2,3,7 1 Biota Environmental Sciences Pty Ltd, PO Box 155, Leederville, Western Australia 6903, Australia. 2 Department of Terrestrial Zoology, Western Australian Museum, Locked Bag 49, Welshpool DC, Western Australia 6986, Australia. 3 School of Animal Biology, University of Western Australia, Crawley, Western Australia 6009, Australia. 4 Division of Invertebrate Zoology, American Museum of Natural History, 79th Street at Central Park West, New York, New York 10024-5192, U.S.A. 5 Department of Entomology, California Academy of Sciences, Golden Gate Park, San Francisco, CA 94103-3009, U.S.A. 6 School of Natural Sciences, Edith Cowan University, Joondalup, Western Australia 6009, Australia. 7 School of Earth and Environmental Sciences, University of Adelaide, South Australia 5005, Australia 8 Corresponding author: Email: [email protected] ABSTRACT – Barrow Island, situated off the north-west Australian coast, is well recognised for its subterranean fauna values. Sampling for both stygobitic and troglobitic fauna has taken place on the island since 1991, and Humphreys (2001) summarised the then current state of knowledge of the island’s subterranean fauna. Sampling for impact assessment purposes on the island over the past decade has substantially increased the recorded species richness of Barrow Island. The number of documented stygal taxa has more than doubled since 2001, from 25 to 63 species now known. Troglobitic diversity has also substantially increased, with six species known in 2001 and 19 troglobitic taxa known today. -
Amphipoda Key to Amphipoda Gammaridea
GRBQ188-2777G-CH27[411-693].qxd 5/3/07 05:38 PM Page 545 Techbooks (PPG Quark) Dojiri, M., and J. Sieg, 1997. The Tanaidacea, pp. 181–278. In: J. A. Blake stranded medusae or salps. The Gammaridea (scuds, land- and P. H. Scott, Taxonomic atlas of the benthic fauna of the Santa hoppers, and beachhoppers) (plate 254E) are the most abun- Maria Basin and western Santa Barbara Channel. 11. The Crustacea. dant and familiar amphipods. They occur in pelagic and Part 2 The Isopoda, Cumacea and Tanaidacea. Santa Barbara Museum of Natural History, Santa Barbara, California. benthic habitats of fresh, brackish, and marine waters, the Hatch, M. H. 1947. The Chelifera and Isopoda of Washington and supralittoral fringe of the seashore, and in a few damp terres- adjacent regions. Univ. Wash. Publ. Biol. 10: 155–274. trial habitats and are difficult to overlook. The wormlike, 2- Holdich, D. M., and J. A. Jones. 1983. Tanaids: keys and notes for the mm-long interstitial Ingofiellidea (plate 254D) has not been identification of the species. New York: Cambridge University Press. reported from the eastern Pacific, but they may slip through Howard, A. D. 1952. Molluscan shells occupied by tanaids. Nautilus 65: 74–75. standard sieves and their interstitial habitats are poorly sam- Lang, K. 1950. The genus Pancolus Richardson and some remarks on pled. Paratanais euelpis Barnard (Tanaidacea). Arkiv. for Zool. 1: 357–360. Lang, K. 1956. Neotanaidae nov. fam., with some remarks on the phy- logeny of the Tanaidacea. Arkiv. for Zool. 9: 469–475. Key to Amphipoda Lang, K. -
(Crustacea) Species of Turkish Inland Waters
E.Ü. Su Ürünleri Dergisi 2006 © Ege University Press E.U. Journal of Fisheries & Aquatic Sciences 2006 ISSN 1300 - 1590 Cilt/Volume 23, Sayı/Issue (1-2): 229–234 http://jfas.ege.edu.tr/ Derleme / Review Check-list of Malacostraca (Crustacea) Species of Turkish Inland Waters *Murat Özbek, M. Ruşen Ustaoğlu Ege University, Faculty of Fisheries, Department of Hydrobiology, TR-35100 Bornova, İzmir, Turkey *E mail: [email protected] Özet: Türkiye içsularının Malacostraca (Crustacea) türlerinin kontrol listesi. Bu güne değin Türkiye içsularından rapor edilen Malacostraca (Crustacea) türlerinin kontrol listesi sunulmuştur. Toplam olarak 37 cinse ait 126 takson tespit edilmiştir. Anahtar Kelimeler: Kontrol listesi, Amphipoda, Isopoda, Decapoda, Mysidacea. Abstract: A check-list of Malacostraca (Crustacea) species reported from Turkish inland waters up to now was presented. Totally 126 taxa belonging to 37 genera were presented. Key Words: Check-list, Amphipoda, Isopoda, Decapoda, Mysidacea. Introduction taxonomy of Malacostraca taxa of Turkish inland waters since Malacostraca as one of the biggest class of Crustacea, the beginning of the 20th century (Vavra 1905; Coifmann comprises about 20.000 taxa distributing both in marine, fresh 1938), the first study by native scientists concerning the and ground water habitats. It has three subclasses which are taxonomy of freshwater Malacostraca species was by Geldiay Eumalacostraca, Haplocarida and Phyllocarida (Özbek and and Kocataş (1970), which concerned the Astacus Ustaoğlu, 2005). In Turkish inland waters, only peracarid and populations of Turkish freshwaters. Seven years later, the eucarid crustaceans of Eumalacostraca have been reported to same authors reported a study on freshwater crabs of Turkey date. (Geldiay and Kocataş, 1977) (Table 1). -
Paramexiweckelia, a New Genus Of
Int. J. Speleol. 12 (1982) pp. 37.44 PARAMEXIWECKELlA, a new Genus of Subterranean Amphipod Crustacean (Hadziidae) from Northern Mexico John R. Holsinger. SUMMARY Paramexiweckelia, new genus, is described from a grounwater outlet in Cohauila, Mexico. The type-species, by monotypy, is Mexiweckelia par.ticeps Holsinger. Based on the number of its ,plesiomorphic (ancesbml) characters, this genus is the most .primitive member of the family Hadziidae from the North American mainland. INTRODUCTION In the years following my description of Mexiweckelia par- ticeps from a groundwater outlet in Coahulia, Mexico (in Hol- singer and Minckley, 1971), it has become apparent that this species differs significantly from other species of the genus (i.e., M. colei Holsinger and Minckley and M. mitchelli Holsinger) and merits recognition at the generic level (see also Barnard, 1976:425; Bousfield, 1977: 297; Holsinger and Longley, 1980. Paramexiweckelia, new genus, is assigned to the family Hadzii- dae Karaman (1943) as revived and broadened by Bousfield in 1965 at the Third International Colloquium on Gammarus and Niphargus in Schlitz (Bousfield, 1977) (see also Stock, 1977). Zimmerman and Barnard (1977) also redefined the family, but in a more restricted way than I find acceptable (Holsinger and Longley, 1980. The description of Paramexiweckelia brings the total num- ber of subterranean freshwater hadziid genera from continen- tal North America to five, including: Mayaweckelia Holsinger • Department of Biological Sciences Old Dominion University, Norfolk, Virginia 23508, U.S.A. I 38 JOHN R. HOLSINGER (1977a) (tWO species) from caves on the Yucatan Peninsula in southern Mexico; Mexiweckelia Holsinger and Minckley (two species from a cave and shallow phreatic water in northern Mexico; and Allotex,£weckelia Holsinger (one species) and Texiweckelia Holsinger (three species) from the Edwards Aqui- fer of south-central Texas, U.S.A., one of which has been split off from Mexiweckelia (Holsinger and Longley, 1980). -
From Isla Pérez, Alacranes Reef, Southern Gulf of Mexico
Nauplius 21(2): 179-194, 2013 179 Intertidal and shallow water amphipods (Amphipoda: Gammaridea and Corophiidea) from Isla Pérez, Alacranes Reef, southern Gulf of Mexico Carlos E. Paz-Ríos, Nuno Simões and Pedro-Luis Ardisson (CEPR, PLA) Departamento de Recursos del Mar, Cinvestav, Carretera antigua a Progreso, km 6, Apdo. Postal 73, Cordemex 97310 Merida, Yucatan, Mexico. E-mails: (CEPR) [email protected]. mx (corresponding author); (PLA) [email protected] (NS) Universidad Nacional Autonoma de Mexico, Facultad de Ciencias, Unidad Multidisciplinaria de Docencia e Investigacion. Puerto de Abrigo s/n. Sisal, Yucatan, Mexico. E-mail: [email protected] ABSTRACT - Tropical coral reefs are known to exhibit high levels of biodiversity. Amphipod crustaceans are successfully adapted to a wide range of marine habitats in coral reefs, but some regions, such as the Campeche Bank in southern Gulf of Mexico, are poorly studied or even unsurveyed for amphipods. To begin to address this paucity of information, the present study records amphipod species from Isla Pérez, an island of the Alacranes Reef National Park, southern Gulf of Mexico. Twenty sites were sampled in the intertidal zone and shallow water adjacent to the island. Thirty-one species of amphipod were identified, 15 of which represented a geographical range extension to the northern Yucatan Peninsula, with four new records for the Mexican south-east sector of the Gulf of Mexico; nine for the Gulf Coast of Mexico; and two for the entire Gulf of Mexico. Significantly, a difference in faunal composition between windward and leeward areas of the intertidal zone was found. Key words: Beach, biodiversity, coral reef, Peracarida, Yucatan INTRODUCTION this biodiversity is thought to consist of small, Among the main types of coral reef (platform, cryptic species of poorly characterized faunal barrier, fringing, and atoll), those that form groups, such as crustaceans (Plaisance et al., islands (e.g. -
Amphipoda: Gammaridea) Del Atlántico Occidental Tropical
NOTA Esta es la versión completa del artículo. La versión publicada en nuestra edición impresa está abreviada. Lista y referencias de los crustáceos anfípodos (Amphipoda: Gammaridea) del Atlántico occidental tropical Manuel Ortíz1, Alberto Martín2 & Yusbelly J. Díaz2 1 Centro de Investigaciones Marinas, Universidad de La Habana, Calle 16 Nº114 e/1ra y 3ra Miramar Playa, Habana, Cuba; [email protected] 2 Laboratorio y Colección de Crustáceos Peracáridos, Departamento de Estudios Ambientales e INTECMAR, Universidad Simón Bolívar, Apartado Postal 89000, Sartenejas-Baruta, Venezuela; [email protected], [email protected] Recibido 09-V-2001. Corregido 25-I-2007. Aceptado 28-II-2007. Abstract: Checklist and references of the Amphipod Crustaceans (Gammaridea) from tropical western Atlantic. The published records of Amphipoda Gammaridea of the tropical western Atlantic region were reviewed and compiled in a checklist. A total of 478 species is recorded (52 families, 199 genera). This adds 20 families and 253 species to the last published list. The families are Ampeliscidae, Amphilochidae, Amphitoidae, Anamixidae, Aoridae, Argissidae, Aristiidae, Bateidae, Biancolinidae, Bogidiellidae, Cheluridae, Colomastigidae, Corophiidae, Cyphocarididae, Cyproideidae, Dexaminidae, Endevouridae, Epimeriidae, Eusiridae, Gammaridae, Hadziidae, Haustoriidae, Hyalellidae, Hyalidae, Hyperiopsidae, Iphimediidae, Isaeidae, Ischyroceridae, Leucothoidae, Liljeborgiidae, Lysianassidae, Megaluropidae, Melitidae, Melphidippidae, Ochlesidae, Oedicerotidae, Pardaliscidae, Phliantidae, -
Global Diversity of Amphipods (Amphipoda; Crustacea) in Freshwater
Hydrobiologia (2008) 595:241–255 DOI 10.1007/s10750-007-9020-6 FRESHWATER ANIMAL DIVERSITY ASSESSMENT Global diversity of amphipods (Amphipoda; Crustacea) in freshwater R. Va¨ino¨la¨ Æ J. D. S. Witt Æ M. Grabowski Æ J. H. Bradbury Æ K. Jazdzewski Æ B. Sket Ó Springer Science+Business Media B.V. 2007 Abstract Amphipods are brooding peracaridan abundant in cool and temperate environments; they crustaceans whose young undergo direct develop- are particularly diversified in subterranean environ- ment, with no independent larval dispersal stage. ments and in running waters (fragmented habitats), Most species are epibenthic, benthic, or subterranean. and in temperate ancient lakes, but are notably rare in There are some 1,870 amphipod species and subspe- the tropics. Of the described freshwater taxa 70% are cies recognized from fresh or inland waters world- Palearctic, 13% Nearctic, 7% Neotropical, 6% Aus- wide at the end of 2005. This accounts for 20% of the tralasian and 3% Afrotropical. Approximately 45% of total known amphipod diversity. The actual diversity the taxa are subterranean; subterranean diversity is may still be several-fold. Amphipods are most highest in the karst landscapes of Central and Southern Europe (e.g., Niphargidae), North America (Crangonyctidae), and Australia (Paramelitidae). The Guest editors: E. V. Balian, C. Le´veˆque, H. Segers and K. Martens majority of Palearctic epigean amphipods are in the Freshwater Animal Diversity Assessment superfamily Gammaroidea, whereas talitroid amphi- pods (Hyalella) account for all Neotropic and much R. Va¨ino¨la¨ (&) of the Nearctic epigean fauna. Major concentrations Finnish Museum of Natural History, University of of endemic species diversity occur in Southern Helsinki, POB 17, 00014 Helsinki, Finland e-mail: risto.vainola@helsinki.fi Europe, Lake Baikal, the Ponto-Caspian basin, Southern Australia (including Tasmania), and the J. -
Bibliography of the Edwards Aquifer, Texas, Through 1993
BIBLIOGRAPHY OF THE EDWARDS AQUIFER, TEXAS, THROUGH 1993 Compiled by Julie A. Menard U.S. GEOLOGICAL SURVEY Open-File Report 95-336 Prepared in support of a study by the CENTER FOR RESEARCH IN WATER RESOURCES, UNIVERSITY OF TEXAS AT AUSTIN Austin, Texas 1995 U.S. DEPARTMENT OF THE INTERIOR BRUCE BABBITT, Secretary U.S. GEOLOGICAL SURVEY Gordon P. Eaton, Director Any use of trade, product, or firm names is for descriptive purposes only and does not imply endorsement by the U.S. Government. For additional information write to: Copies of this report can be purchased from: U.S. Geological Survey Earth Science Information Center District Chief Open-File Reports Section U.S. Geological Survey Box 25286, Mail Stop 517 8011 Cameron Rd. Denver Federal Center Austin, TX 78754-3898 Denver, CO 80225-0046 CONTENTS Abstract .................................................................................................................^^ 1 Introduction ....................................................................................................................^^ 1 Purpose and Scope .................................................................................................................................................... 1 Description of the Edwards Aquifer ......................................................................................................................... 1 Sources of Related Information ...............................................................................................................................