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Outline of Angiosperm Phylogeny
Outline of angiosperm phylogeny: orders, families, and representative genera with emphasis on Oregon native plants Priscilla Spears December 2013 The following listing gives an introduction to the phylogenetic classification of the flowering plants that has emerged in recent decades, and which is based on nucleic acid sequences as well as morphological and developmental data. This listing emphasizes temperate families of the Northern Hemisphere and is meant as an overview with examples of Oregon native plants. It includes many exotic genera that are grown in Oregon as ornamentals plus other plants of interest worldwide. The genera that are Oregon natives are printed in a blue font. Genera that are exotics are shown in black, however genera in blue may also contain non-native species. Names separated by a slash are alternatives or else the nomenclature is in flux. When several genera have the same common name, the names are separated by commas. The order of the family names is from the linear listing of families in the APG III report. For further information, see the references on the last page. Basal Angiosperms (ANITA grade) Amborellales Amborellaceae, sole family, the earliest branch of flowering plants, a shrub native to New Caledonia – Amborella Nymphaeales Hydatellaceae – aquatics from Australasia, previously classified as a grass Cabombaceae (water shield – Brasenia, fanwort – Cabomba) Nymphaeaceae (water lilies – Nymphaea; pond lilies – Nuphar) Austrobaileyales Schisandraceae (wild sarsaparilla, star vine – Schisandra; Japanese -
Columbines School of Botanical Studies Wild Food Tending Economic Botanical Survey Trip #9: North Umpqua Watershed
Columbines School of Botanical Studies Wild Food Tending Economic Botanical Survey Trip #9: North Umpqua Watershed August 8-9, 2019 Abundance Phenology d – dominant (defines the plant community) L - In Leaf a - abundant (codominant of the overstory or dominant of lower layer) FL - In Flower c – common (easily seen) FR - In Fruit o – occasional (walk around to see) SN - Senescent r – rare (trace, must search for it) Uses Genus Name Notes Abundance Phenology Food: Roots Brodiaea sp. incl Dichelostemma Brodiaea sp., Triteleia sp. Camassia leichtlinii Great Camas a FR-SN Camassia quamash ssp. intermedia Camas c FR-SN Camassia sp. Common Camas Cirsium vulgare Bull Thistle Daucus carota Wild Carrot a Hypochaeris radicata False Dandelion Lilium sp. Lily Osmorhiza berteroi (O. chilensis) Sweet Cicely Perideridia howellii Yampah Perideridia montana (P. gairdneri) Late Yampah c FL Taraxacum officinalis Dandelion r FL Typha latifolia Cattail FL Food: Greens and Potherbs Berberis aquifolium Tall Oregon Grape Berberis nervosa Oregon Grape Castilleja miniata Paintbrush cf. Potentilla sp. Potentilla Chamaenerion angustifolium Fireweed (Epilobium a.) Cirsium vulgare Bull Thistle Daucus carota Wild Carrot a Erythranthe guttata (Mimulus g.) Yellow Monkeyflower Fragaria sp. Wild Strawberry Gallium sp. Bedstraw, Cleavers Hypochaeris radicata False Dandelion Columbines School of Botanical Studies Wild Food Tending Economic Botanical Survey Trip #9: North Umpqua Watershed Uses Genus Name Notes Abundance Phenology Leucanthemum vulgare Ox Eye Daisy c FL (Chrysanthemum l.) Osmorhiza berteroi (O. chilensis) Sweet Cicely Perideridia howellii Yampah Perideridia montana (P. gairdneri) Late Yampah c FL Plantago lanceolata Plantain Prunella vulgaris Self Heal, Heal All Rosa sp. Wild Rose Rubus ursinus Blackberry Rumex obtusifolius Bitter Dock Sidalcea sp. -
Biotic Evaluation Dias and Hobbs City of Fremont
BIOTIC EVALUATION DIAS AND HOBBS CITY OF FREMONT, ALAMEDA COUNTY, CALIFORNIA By: LIVE OAK ASSOCIATES, INC. Rick Hopkins, Ph.D., Principal, Senior Ecologist Pamela Peterson, Sr. Project Manager, Plant/Wetland Ecologist Katrina Krakow, M.S., Project Manager, Staff Ecologist For: Robson Homes Attn: Jake Lavin 2185 The Alameda, Suite 150 San Jose, CA 95126 April 3, 2014 Project No. 1821-01 TABLE OF CONTENTS 1.0 INTRODUCTION ....................................................................................................... 4 2.0 EXISTING CONDITIONS .......................................................................................... 8 2.1 BIOTIC HABITATS/LAND USES .................................................................................................................... 10 2.1.1 PASTURE ...................................................................................................................................................... 10 2.1.2 RUDERAL FIELD ........................................................................................................................................ 13 2.1.3 DEVELOPED ................................................................................................................................................ 14 2.1.3 EUCALYPTUS GROVE ............................................................................................................................... 15 2.2 MOVEMENT CORRIDORS ............................................................................................................................ -
The Jepson Manual: Vascular Plants of California, Second Edition Supplement II December 2014
The Jepson Manual: Vascular Plants of California, Second Edition Supplement II December 2014 In the pages that follow are treatments that have been revised since the publication of the Jepson eFlora, Revision 1 (July 2013). The information in these revisions is intended to supersede that in the second edition of The Jepson Manual (2012). The revised treatments, as well as errata and other small changes not noted here, are included in the Jepson eFlora (http://ucjeps.berkeley.edu/IJM.html). For a list of errata and small changes in treatments that are not included here, please see: http://ucjeps.berkeley.edu/JM12_errata.html Citation for the entire Jepson eFlora: Jepson Flora Project (eds.) [year] Jepson eFlora, http://ucjeps.berkeley.edu/IJM.html [accessed on month, day, year] Citation for an individual treatment in this supplement: [Author of taxon treatment] 2014. [Taxon name], Revision 2, in Jepson Flora Project (eds.) Jepson eFlora, [URL for treatment]. Accessed on [month, day, year]. Copyright © 2014 Regents of the University of California Supplement II, Page 1 Summary of changes made in Revision 2 of the Jepson eFlora, December 2014 PTERIDACEAE *Pteridaceae key to genera: All of the CA members of Cheilanthes transferred to Myriopteris *Cheilanthes: Cheilanthes clevelandii D. C. Eaton changed to Myriopteris clevelandii (D. C. Eaton) Grusz & Windham, as native Cheilanthes cooperae D. C. Eaton changed to Myriopteris cooperae (D. C. Eaton) Grusz & Windham, as native Cheilanthes covillei Maxon changed to Myriopteris covillei (Maxon) Á. Löve & D. Löve, as native Cheilanthes feei T. Moore changed to Myriopteris gracilis Fée, as native Cheilanthes gracillima D. -
Vegetation Ecology and Change in Terrestrial Ecosystems 35
Chapter 4—Vegetation Ecology and Change in Terrestrial Ecosystems 35 CHAPTER 4 Vegetation Ecology and Change in Terrestrial Ecosystems John B. Taft1, Roger C. Anderson2, and Louis R. Iverson3 with sidebar by William C. Handel1 1. Illinois Natural History Survey 2. Department of Biology, Illinois State University 3. USDA Forest Service OBJECTIVES What are the major vegetation types that have occurred in Illinois and how have they changed since the last ice age and more specifically since European-Americans settled the region? Ecological factors influencing trends, composition, and diversity in prairie, savanna, open woodland, and forest communities are examined. Historical and contemporary changes will be explored with reference to the proportion and characteristics of habitats remaining in a relatively undegraded condition. While Illinois is a focus for this chapter, the processes and factors explaining vegetational variation have relevance to the entire Midwest and in many cases beyond. INTRODUCTION key step in conserving biodiversity. The following chapter explores the dominant types of native terrestrial vegetation Vegetation change is a major focus of ecological monitoring and changes as they have occurred in Illinois primarily since and research and has both temporal and spatial aspects. Of Pleistocene glaciation with a focus on the post-European course, all change is measured through time. Change can settlement period. be evaluated on a time scale of thousands of years, such as following Pleistocene glaciation, or in the time frame of an In thE FOrMEr tIME annual species. An example of a spatial aspect of vegetation The last glacial episode, known as Wisconsinan glaciation, change is the emergence of forest where once prairie covered the northeastern quarter of Illinois from about occurred (see Fig. -
ETHNOGRAPHIC OVERVIEW DRAFT #2 Colorado National Monument Sally Mcbeth February 26, 2010
ETHNOGRAPHIC OVERVIEW DRAFT #2 Colorado National Monument Sally McBeth February 26, 2010 written in consultation with the Northern Ute ETHNOGRAPHIC OVERVIEW DRAFT #2 Colorado National Monument Sally McBeth February 26, 2010 written in consultation with the Northern Ute Submitted to the National Park Service Cooperative Agreement # H1200040001 (phases I and II) and H1200090004 (phase III) ACKNOWLEDGMENTS The generosity of many Ute friends, whose willingness to share their stories, remembrances, and recollections with me cannot go unacknowledged. I treasure their rich and profound understandings of ancestral landscape shared with me over the past three years. These friends include, but are not limited to Northern Ute tribal members (alphabetically): Loya Arrum, Betsy Chapoose, Clifford Duncan, Kessley LaRose, Roland McCook, Venita Taveapont, and Helen Wash. Their advice and suggestions on the writing of this final report were invaluable. Special thanks are due to Hank Schoch—without whose help I really would not have been able to complete (or even start) this project. His unflagging generosity in introducing me to the refulgent beauty and cultural complexity of Colorado National Monument cannot ever be adequately acknowledged. I treasure the memories of our hikes and ensuing discussions on politics, religion, and life. The critical readings by my friends and colleagues, Sally Crum (USFS), Dave Fishell (Museum of the West), Dave Price (NPS), Hank Schoch (NPS-COLM), Alan McBeth, and Mark Stevens were very valuable. Likewise the advice and comments of federal-level NPS staff Cyd Martin, Dave Ruppert, and especially Tara Travis were invaluable. Thanks, all of you. Former Colorado National Monument Superintendant Bruce Noble and Superintendant Joan Anzelmo provided tremendous support throughout the duration of the project. -
Protocol Information
Protocol Information Dave Skinner PMC Farm Manager Pullman Plant Materials Center Room 104 Hulbert Hall WSU Pullman, Washington 99163-6211 509-335-9689 509-335-2940 Fax [email protected] Family Scientific Name: Apiaceae Family Common Name: Parsley or Carrot Scientific Name: Perideridia gairdneri (Hook. & Arn.) Mathias Common Name: Gairdner's yampah, Western yampah, False caraway Species Code: PEGA3 Ecotype: Paradise Creek drainage near Pullman, Washington. General Distribution: Western North America from British Columbia east to Saskatchewan and south to New Mexico. Mean annual precipitation range is 14-24 inches (USDA NRCS 2006). In eastern Washington it is usually found in open mesic meadows and open forest. Wetland status is FACU (US Fish and Wildlife Service 1988). Propagation Goal: Plants Propagation Method: Seed Product Type: Container (plug) Time To Grow: 2 Years Propagule Collection: Fruit is a schizocarp. Seed is collected in September or early October when the inflorescence is dry and the seeds are brown in color. Seed can be stripped from the inflorescence or the entire inflorescence can be clipped from the plant. Harvested seed is stored in paper bags at room temperature until cleaned. 400,000 seeds/lb (USDA NRCS 2006). Propagule Processing: The inflorescence is rubbed by hand to free the seed, then cleaned with an air column separator. Clean seed is stored in controlled conditions at 40 degrees Fahrenheit and 40% relative humidity. Pre-Planting Treatments: Unpublished data from trials conducted at the Pullman Plant Materials Center revealed that no germination occurred without stratification or with 30 days stratification. 60 days of cold, moist stratification resulted in 38% germination. -
Loch Lomond Button-Celery)
Natural Diversity Data Base 2003). The Sacramento National Wildlife Refuge populations have been monitored annually since 1992 (J. Silveira in litt. 2000). One additional occurrence of C. hooveri in Merced County is on private land (the Bert Crane Ranch) that is protected from development by a conservation easement (J. Silveira in litt. 2000). We funded a status survey for Chamaesyce hooveri and other vernal pool plants in 1986 and 1987 (Stone et al. 1988), resulting in 10 new occurrences. We and the California Department of Fish and Game jointly funded an ecological study of the Vina Plains Preserve pools, which was conducted by faculty from California State University, Chico (Alexander and Schlising 1997). Independent surveys conducted by Joseph Silveira led to discovery of the Merced and Glenn county occurrences (J. Silveira in litt. 2000). Private landowners also have contributed to conservation of this species. One pool in Tehama County was fenced by the property owner in the late 1980s, to exclude livestock (Stone et al. 1988). 3. ERYNGIUM CONSTANCEI (LOCH LOMOND BUTTON-CELERY) a. Description and Taxonomy Taxonomy.—Loch Lomond button-celery, specifically known as Eryngium constancei (Sheikh 1983), is a member of the carrot family (Apiaceae). This species was only recently described and therefore has no history of name changes. The common name was derived from the type locality, Loch Lomond, which is in Lake County (Sheikh 1983). Other common names for this species are Loch Lomond coyote-thistle (Skinner and Pavlik 1994) and Constance’s coyote-thistle (Smith et al. 1980). Description and Identification.—Certain features are common to species of the genus Eryngium. -
Edible Seeds and Grains of California Tribes
National Plant Data Team August 2012 Edible Seeds and Grains of California Tribes and the Klamath Tribe of Oregon in the Phoebe Apperson Hearst Museum of Anthropology Collections, University of California, Berkeley August 2012 Cover photos: Left: Maidu woman harvesting tarweed seeds. Courtesy, The Field Museum, CSA1835 Right: Thick patch of elegant madia (Madia elegans) in a blue oak woodland in the Sierra foothills The U.S. Department of Agriculture (USDA) prohibits discrimination in all its pro- grams and activities on the basis of race, color, national origin, age, disability, and where applicable, sex, marital status, familial status, parental status, religion, sex- ual orientation, genetic information, political beliefs, reprisal, or because all or a part of an individual’s income is derived from any public assistance program. (Not all prohibited bases apply to all programs.) Persons with disabilities who require alternative means for communication of program information (Braille, large print, audiotape, etc.) should contact USDA’s TARGET Center at (202) 720-2600 (voice and TDD). To file a complaint of discrimination, write to USDA, Director, Office of Civil Rights, 1400 Independence Avenue, SW., Washington, DC 20250–9410, or call (800) 795-3272 (voice) or (202) 720-6382 (TDD). USDA is an equal opportunity provider and employer. Acknowledgments This report was authored by M. Kat Anderson, ethnoecologist, U.S. Department of Agriculture, Natural Resources Conservation Service (NRCS) and Jim Effenberger, Don Joley, and Deborah J. Lionakis Meyer, senior seed bota- nists, California Department of Food and Agriculture Plant Pest Diagnostics Center. Special thanks to the Phoebe Apperson Hearst Museum staff, especially Joan Knudsen, Natasha Johnson, Ira Jacknis, and Thusa Chu for approving the project, helping to locate catalogue cards, and lending us seed samples from their collections. -
Downloaded from Genbank (NCBI) Were Aligned with Clustalw 1.8 Available on Biology Workbench (SDSC) Using the Default Settings
CALIFORNIA STATE UNIVERSITY, NORTHRIDGE EVOLUTION OF ANTHOCYANIDIN SYNTHASE IN HAWAIIAN SILVERSWORDS AND CALIFORNIA TARWEEDS A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science in Biology by Ekaterina Kovacheva May 2011 The thesis of Ekaterina Kovacheva is approved: Michael Summers, Ph.D. Date Stan Metzenberg, Ph.D. Date Virginia berholzer Vandergon, Ph.D., Chau Date California State University, Northridge 11 TABLE OF CONTENTS Signature Page 11 List ofFigures IV Abstract v Introduction 1 Materials and Methods 9 Results 15 Discussion 19 Conclusion 24 References 25 Appendix A: Figures 31 Appendix B: Coding Sequences and Multiple Sequence Alignments 49 111 LIST OF FIGURES Figure Al: A generalized scheme ofthe flavonoid biosynthetic pathway 31 Figure A2: Proposed mechanism of action of anthocyanidin synthase 32 Figure A3. Comparison of the action of iron and 2-0G dependent oxygenases ANS and FLS 3 3 Figure A4: Structure of ANS 34 Figure AS: Map of ANS and primers used 35 Figure A6: Primers that successfully produced results 36 Figure A7: Species used for pylogenetic analysis 37 Figure A8: PCR Protocol for all reactions 39 Figure A9: Cycling conditions for PCR 40 Figure AlO: Number of forward and reverse clones 41 Figure All: Intron sizes and sections of exons 1 and 2 that were sequenced from each copy of ANS 42 Figure Al2: Maximum likelihood tree generated with MEGA 5 43 Figure A13: Bayesian tree generated with MrBayes 3.1.2 45 Figure Al4: Ka/Ks values for selected Madiinae 47 Figure Al5: Ka/Ks ratios for various structural and regulatory genes found in Madiinae 48 Figure B 1: Coding sequences obtained in this study 49 Figure B2: Protein sequence aligmnent of all sequences used in this study 52 Figure B3: Protein sequence alignment of the sequences, excluding the short Holocarpha sp. -
Big Tarplant (Blepharizonia Plumosa)
Plants Big Tarplant (Blepharizonia plumosa) Big Tarplant (Blepharizonia plumosa) Status Federal: None State: None CNPS: List 1B Population Trend Global: Unknown State: Unknown Within Inventory Area: Unknown © 2002 John Game Data Characterization The location database for big tarplant includes 36 data records dated from 1916 to 2001 (California Natural Diversity Database 2005). Twenty-nine of the occurrences were documented within the last 10 years. Seven of the occurrences have not been observed for over 60 years, but all the other occurrences are believed to be extant (California Natural Diversity Database 2005). Most of the occurrences are of high precision and may be accurately located, including those within the inventory area. Very little ecological information is available for big tarplant. The published literature on the species pertains primarily to its taxonomy. The main sources of general information on this species are the Jepson Manual (Hickman 1993) and the California Native Plant Society (2005). Specific observations on habitat and plant associates, threats, and other factors are summarized in the California Natural Diversity Database (2005). Range Big tarplant is endemic to the Mount Diablo foothills and is found primarily in eastern Contra Costa, eastern Alameda, and western San Joaquin Counties (Hoover 1937). Occurrences within the ECCC HCP/NCCP Inventory Area In the inventory area, big tarplant is known from 4 occurrences on Cowell Ranch, west of Brentwood, 7 occurrences on Roddy Ranch, south of Antioch, and one occurrence in Mount Diablo State Park, southeast of Clayton (California Natural Diversity Database 2005, Lake 2004). The historic occurrences in Antioch are likely to have been extirpated, although at least 1 population is present at Black Diamond Mines Regional Park (Preston pers. -
Challenges to Introducing and Managing Disturbance Regimes for Holocarpha Macradenia, an Endangered Annual Grassland Forb
Challenges to Introducing and Managing Disturbance Regimes for Holocarpha macradenia, an Endangered Annual Grassland Forb KAREN D. HOLL∗ AND GREY F. HAYES† Environmental Studies Department, University of California, Santa Cruz, CA 95064, U.S.A. Abstract: Introducing rare plants to new sites for conservation to offset effects of habitat destruction requires detailed knowledge of habitat requirements, plant demography, and management needs. We conducted a factorial experiment replicated at three coastal prairie sites to test the effects of clipping frequency and litter accumulation on seed germination, seedling survival, reproduction, and seedling recruitment of introduced populations of the endangered, tall-stature, annual forb, Holocarpha macradenia (DC.) E. Greene. Clipping favored H. macradenia, primarily by enhancing seed germination and flower production. Litter accumulation had no effect on seed germination, even after 5 years of treatments. Seedling recruitment was highly site specific with large numbers of recruits recorded at only one of three sites. Although recruitment of seedlings was higher in clipped plots for 2–3 years, by 4–5 years after introduction very few seedlings survived to reproduction in any treatment. We attribute this result to a combination of poor habitat quality, small population size, and lack of a seed bank. We were unsuccessful in introducing this relatively well-studied species of concern to apparently suitable habitat at multiple sites in multiple years, which suggests that translocating rare plant populations