GC-MS Phytochemical Profiling, Pharmacological Properties
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Brief Guide to the Nomenclature of Organic Chemistry
1 Brief Guide to the Nomenclature of Table 1: Components of the substitutive name Organic Chemistry (4S,5E)-4,6-dichlorohept-5-en-2-one for K.-H. Hellwich (Germany), R. M. Hartshorn (New Zealand), CH3 Cl O A. Yerin (Russia), T. Damhus (Denmark), A. T. Hutton (South 4 2 Africa). E-mail: [email protected] Sponsoring body: Cl 6 CH 5 3 IUPAC Division of Chemical Nomenclature and Structure suffix for principal hept(a) parent (heptane) one Representation. characteristic group en(e) unsaturation ending chloro substituent prefix 1 INTRODUCTION di multiplicative prefix S E stereodescriptors CHEMISTRY The universal adoption of an agreed nomenclature is a key tool for 2 4 5 6 locants ( ) enclosing marks efficient communication in the chemical sciences, in industry and Multiplicative prefixes (Table 2) are used when more than one for regulations associated with import/export or health and safety. fragment of a particular kind is present in a structure. Which kind of REPRESENTATION The International Union of Pure and Applied Chemistry (IUPAC) multiplicative prefix is used depends on the complexity of the provides recommendations on many aspects of nomenclature.1 The APPLIED corresponding fragment – e.g. trichloro, but tris(chloromethyl). basics of organic nomenclature are summarized here, and there are companion documents on the nomenclature of inorganic2 and Table 2: Multiplicative prefixes for simple/complicated entities polymer3 chemistry, with hyperlinks to original documents. An No. Simple Complicated No. Simple Complicated AND overall -
Introduction to NMR Spectroscopy of Proteins
A brief introduction to NMR spectroscopy of proteins By Flemming M. Poulsen 2002 1 Introduction Nuclear magnetic resonance, NMR, and X-ray crystallography are the only two methods that can be applied to the study of three-dimensional molecular structures of proteins at atomic resolution. NMR spectroscopy is the only method that allows the determination of three-dimensional structures of proteins molecules in the solution phase. In addition NMR spectroscopy is a very useful method for the study of kinetic reactions and properties of proteins at the atomic level. In contrast to most other methods NMR spectroscopy studies chemical properties by studying individual nuclei. This is the power of the methods but sometimes also the weakness. NMR spectroscopy can be applied to structure determination by routine NMR techniques for proteins in the size range between 5 and 25 kDa. For many proteins in this size range structure determination is relatively easy, however there are many examples of structure determinations of proteins, which have failed due to problems of aggregation and dynamics and reduced solubility. It is the purpose of these notes to introduce the reader to descriptions and applications of the methods of NMR spectroscopy most commonly applied in scientific studies of biological macromolecules, in particular proteins. The figures 1,2 and 11 are copied from “Multidímensional NMR in Liquids” by F.J.M de Ven (1995)Wiley-VCH The Figure13 and Table 1 have been copied from “NMR of Proteins and Nucleic acis” K. Wüthrich (1986) Wiley Interscience The Figures 20, 21 and 22 have been copied from J. -
Chukrasia Tabularis A
Chukrasia tabularis A. Juss. Meliaceae yonhim, yinma, Chittagong wood, chickrassy LOCAL NAMES Bengali (pabba,boga poma,chikrassi); Burmese (yinma,tawyinma,kinthatputgyi); English (bastard cedar,white cedar,East Indian mahogany,Indian redwood,Burma almond wood,chickrassy,chittagong wood); Hindi (chikrassi,pabba,madagari,boga poma); Khmer (voryong); Lao (Sino-Tibetan) (nhom khao,nhom hin,nhom); Malay (cherana puteh,suntang puteh,surian batu,repoh); Tamil (agil,maleivembu); Thai (fakdap,siat-ka,siay-ka,yom-hin); Trade name (Chittagong wood,chickrassy,yonhim,yinma); Vietnamese (l[as]t hoa) BOTANIC DESCRIPTION Chukrasia tabularis is an evergreen or deciduous, monoecious, medium- sized, sometimes fairly large tree up to 30 (max. 40) m tall; bole branchless for up to 18 (max. 32) m, with a diameter of up to 110 (max. 175) cm, without buttresses; bark surface rusty brown or deep brown, deeply fissured or cracked, with lenticels, inner bark reddish. Leaves paripinnate, 30-50 cm long, with 4-6 pairs of opposite or alternate, entire, asymmetrical and acuminate leaflets (imparipinnate and lobed or incised when juvenile)with dentate margins, glabrous or with simple hairs. Flowers unisexual, small, in axillary (sometimes appearing terminal) thyrses, tetramerous or pentamerous, up to 16 mm long; calyx lobed; petals free, contorted, reflexed in open flowers, white, in 10-30 cm long panicles. Fruit an erect woody ovoid or ellipsoid capsule 2.5-5.0 cm long, opening by 3-5 valves from the apex; valves separating to a woody outer and inner layer, apex of those in the inner layer deeply bifid; locules appearing as 1 locule due to the breaking of the septae; columella with sharp ridges. -
Chapter 1: Atoms, Molecules and Ions
Previous Chapter Table of Contents Next Chapter Chapter 1: Atoms, Molecules and Ions Section 1.1: Introduction In this course, we will be studying matter, “the stuff things are made of”. There are many ways to classify matter. For instance, matter can be classified according to the phase, that is, the physical state a material is in. Depending on the pressure and the temperature, matter can exist in one of three phases (solid, liquid, or gas). The chemical structure of a material determines the range of temperatures and pressures under which this material is a solid, a liquid or a gas. Consider water for example. The principal differences between water in the solid, liquid and gas states are simply: 1) the average distance between the water molecules; small in the solid and the liquid and large in the gas and 2) whether the molecules are organized in an orderly three-dimensional array (solid) or not (liquid and gas). Another way to classify matter is to consider whether a substance is pure or not. So, matter can be classified as being either a pure substance or a mixture. A pure substance has unique composition and properties. For example, water is a pure substance (whether from Texas or Idaho, each water molecule always contains 2 atoms of hydrogen for 1 atom of oxygen). Under the same atmospheric pressure and at the same ambient temperature, water always has the same density. We can go a little further and classify mixtures are either homogeneous or heterogeneous. In a homogeneous mixture, for example, as a result of mixing a teaspoon of salt in a glass of water, the composition of the various components and their properties are the same throughout. -
Electron Paramagnetic Resonance of Radicals and Metal Complexes. 2. International Conference of the Polish EPR Association. Wars
! U t S - PL — voZ, PL9700944 Warsaw, 9-13 September 1996 ELECTRON PARAMAGNETIC RESONANCE OF RADICALS AND METAL COMPLEXES 2nd International Conference of the Polish EPR Association INSTITUTE OF NUCLEAR CHEMISTRY AND TECHNOLOGY UNIVERSITY OF WARSAW VGL 2 8 Hi 1 2 ORGANIZING COMMITTEE Institute of Nuclear Chemistry and Technology Prof. Andrzej G. Chmielewski, Ph.D., D.Sc. Assoc. Prof. Hanna B. Ambroz, Ph.D., D.Sc. Assoc. Prof. Jacek Michalik, Ph.D., D.Sc. Dr Zbigniew Zimek University of Warsaw Prof. Zbigniew Kqcki, Ph.D., D.Sc. ADDRESS OF ORGANIZING COMMITTEE Institute of Nuclear Chemistry and Technology, Dorodna 16,03-195 Warsaw, Poland phone: (0-4822) 11 23 47; telex: 813027 ichtj pi; fax: (0-4822) 11 15 32; e-mail: [email protected] .waw.pl Abstracts are published in the form as received from the Authors SPONSORS The organizers would like to thank the following sponsors for their financial support: » State Committee of Scientific Research » Stiftung fur Deutsch-Polnische Zusammenarbeit » National Atomic Energy Agency, Warsaw, Poland » Committee of Chemistry, Polish Academy of Sciences, Warsaw, Poland » Committee of Physics, Polish Academy of Sciences, Poznan, Poland » The British Council, Warsaw, Poland » CIECH S.A. » ELEKTRIM S.A. » Broker Analytische Messtechnik, Div. ESR/MINISPEC, Germany 3 CONTENTS CONFERENCE PROGRAM 9 LECTURES 15 RADICALS IN DNA AS SEEN BY ESR SPECTROSCOPY M.C.R. Symons 17 ELECTRON AND HOLE TRANSFER WITHIN DNA AND ITS HYDRATION LAYER M.D. Sevilla, D. Becker, Y. Razskazovskii 18 MODELS FOR PHOTOSYNTHETIC REACTION CENTER: STEADY STATE AND TIME RESOLVED EPR SPECTROSCOPY H. Kurreck, G. Eiger, M. Fuhs, A Wiehe, J. -
How to Read and Interpret FTIR Spectroscope of Organic Material
97| Indonesian JournalIndonesian of Science Journal & Technology of Science &,Volum Technologye 4 Issue 4 ( 11,) (20April19 )2019 97-1 18Page 97-118 Indonesian Journal of Science & Technology Journal homepage: http://ejournal.upi.edu/index.php/ijost/ How to Read and Interpret FTIR Spectroscope of Organic Material Asep Bayu Dani Nandiyanto, Rosi Oktiani, Risti Ragadhita Departemen Kimia, Universitas Pendidikan Indonesia, Jl. Dr. Setiabudi no 229 Bandung 40154, Indonesia Correspondence: E-mail: [email protected] A B S T R A C T S A R T I C L E I N F O Article History: Fourier Transform Infrared (FTIR) has been developed as a Received 10 Jan 2019 tool for the simultaneous determination of organic Revised 20 Jan 2019 components, including chemical bond, as well as organic Accepted 31 Aug 2019 Available online 09 Apr 2019 content (e.g., protein, carbohydrate, and lipid). However, ____________________ until now, there is no further documents for describing the Keywords: detailed information in the FTIR peaks. The objective of this FTIR, study was to demonstrate how to read and assess chemical infrared spectrum, organic material, bond and structure of organic material in the FTIR, in which chemical bond, the analysis results were then compared with the literatures. organic structure. The step-by-step method on how to read the FTIR data was also presented, including reviewing simple to the complex organic materials. This study is potential to be used as a standard information on how to read FTIR peaks in the biochemical and organic materials. © 2019Tim Pengembang Jurnal UPI 1. INTRODUCTION analysis is quite rapid, good in accuracy, and relatively sensitive (Jaggi and Vij, 2006). -
Numerical Methods in Electron Magnetic Resonance
NO0000039 NUMERICAL METHODS IN ELECTRON MAGNETIC RESONANCE ANALYSES AND SIMULATIONS IN QUEST OF STRUCTURAL AND DYNAMICAL PROPERTIES OF FREE RADICALS IN SOLIDS BY ANDERS RASMUS S0RNES Thesis submitted for the degree Doctor scientiarum Department of Physics, University of Oslo 1998 31-18 Preface This thesis encompasses a collection of six theoretical and experimental Electron Magnetic Resonance (EMR) studies of the structure and dynamics of free radicals in solids. Radicals are molecular systems having one or more unpaired electron. Due to their energetically unfavourable open shell configuration, they are highly reactive. Radicals are formed in different ways. They are believed to be present in many chemical reactions as short-lived intermediate products, and they are also produced in interactions of x-radiation with matter, in Compton and photoelectric processes and interactions of their secondary electrons. Longer-lived, quasistable radicals do also exist and these may be used as spin-labels or spin-probes and may be attached to larger molecules and surfaces as measurement probes to examine the environment in their immediate vicinity. EMR is a collective term for a group of spectroscopic techniques inducing and observing transitions between the Zeeman levels of a paramagnetic system, such as a radical situated in an external magnetic field. Whithin the broader concept of EMR, the particular experimental techniques of Electron Paramagnetic Resonance (EPR), ELectron Nuclear DOuble Resonance (ENDOR), Field Swept ENDOR (FSE) and Electron Spin Echo Envelope Modulation (ESEEM) are discussed in this thesis. The focal point of this thesis is the development and use of numerical methods in the analysis, simulation and interpretation of EMR experiments on radicals in solids to uncover the structure, the dynamics and the environment of the system. -
Fourier Transform Infrared (FTIR) Spectroscopy Analysis of Transformer Paper in Mineral Oil-Paper Composite Insulation Under Accelerated Thermal Aging
energies Article Fourier Transform Infrared (FTIR) Spectroscopy Analysis of Transformer Paper in Mineral Oil-Paper Composite Insulation under Accelerated Thermal Aging Abi Munajad * ID , Cahyo Subroto ID and Suwarno ID School of Electrical Engineering and Informatics, Institut Teknologi Bandung, Bandung 40132, Indonesia; [email protected] (C.S.); [email protected] (S.) * Correspondence: [email protected]; Tel.: +62-857-465-76059 Received: 26 December 2017; Accepted: 29 January 2018; Published: 4 February 2018 Abstract: Mineral oil is the most popular insulating liquid for high voltage transformers due to its function as a cooling liquid and an electrical insulator. Kraft paper has been widely used as transformer solid insulation for a long time already. The degradation process of transformer paper due to thermal aging in mineral oil can change the physical and chemical structure of the cellulose paper. Fourier transform infrared (FTIR) spectroscopy analysis was used to identify changes in the chemical structure of transformer paper aged in mineral oil. FTIR results show that the intensity of the peak absorbance of the O–H functional group decreased with aging but the intensity of the peak absorbance of the C–H and C=O functional groups increased with aging. Changes in the chemical structure of the cellulose paper during thermal aging in mineral oil can be analyzed by an oxidation process of the cellulose paper and the reaction process between the carboxylic acids in the mineral oil and the hydroxyl groups on the cellulose. The correlation between the functional groups and the average number of chain scissions of transformer paper gives initial information that the transformer paper performance can be identified by using a spectroscopic technique as a non-destructive diagnostic technique. -
Growing Australian Red Cedar and Other Meliaceae Species in Plantation
G row i n g Australian Red Cedar and other Meliaceae species in plantation A report published by the RIRDC/Land & Water Australia/FWPRDC/MDBC Joint Venture Agroforestry Program RIRDC publication number 04/135 “All living things are interrelated. Whatever happens to the earth will happen to all children of the earth”. Jefe Seattle 1785-1866 “It merely requires interest and effort, so that one day there will be avenues, small forests and garden cedars across the length and breadth of the country; and if they do take one hundred years to mature, we can be sure that future generations will be very pleased with us, for ‘Toona australis’ is the most beautiful of all cedars.” John Vader (1987) in: Red Cedar, The Tree of Australia’s History © 2005 Rural Industries Research and Development Corporation, Canberra. All rights reserved. ISBN 1 74151 043 0 ISSN 1440 6845 Publication number: 04/135 Growing Australian Red Cedar and Other Meliaceae Species in Plantation The information contained in this publication is intended for general use to assist public knowledge and discussion and to help improve the development of sustainable industries. The information should not be relied upon for the purpose of a particular matter. Specialist and/or appropriate legal advice should be obtained before any action or decision is taken on the basis of any material in this document. The Commonwealth of Australia, Rural Industries Research and Development Corporation, the authors or contributors do not assume liability of any kind whatsoever resulting from any person’s use or reliance upon the content of this document. -
Syllabus Chem 646
SYLLABUS CHEM 646 Course title and number Physical Organic Chemistry, CHEM 646 Term Fall 2019 Meeting times and location MWF 10:20 am – 11:10 am, Room: CHEM 2121 Course Description and Learning Outcomes Prerequisites: Organic Chemistry I and II or equivalent undergraduate organic chemistry courses. Physical Organic Chemistry (CHEM646) is a graduate/senior-undergrad level course of advanced organic chemistry. Physical organic chemistry refers to a discipline of organic chemistry that focuses on the relationship between chemical structure and property/reactivity, in particular, applying experimental and theoretical tools of physical chemistry to the study of organic molecules and reactions. Specific focal points of study include the bonding and molecular orbital theory of organic molecules, stability of organic species, transition states, and reaction intermediates, rates of organic reactions, and non-covalent aspects of solvation and intermolecular interactions. CHEM646 is designed to prepare students for graduate research on broadly defined organic chemistry. This course will provide the students with theoretical and practical frameworks to understand how organic structures impact the properties of organic molecules and the mechanism for organic reactions. By the end of this course, students should be able to: 1. Gain in-depth understanding of the nature of covalent bonds and non-covalent interactions 2. Use molecule orbital theory to interpret the property and reactivity of organic species. 3. Understand the correlation between the structure and physical/chemical properties of organic molecules, such as stability, acidity, and solubility. 4. Predict the reactivity of organic molecules using thermodynamic and kinetic analyses 5. Probe the mechanism of organic reactions using theoretical and experimental approaches. -
Provenance Performance of Chukrasia in a Five-Year-Old Field Trial in the Northern Territory, Australia
122 Performance of Chuckrasia in the Northern Territory Provenance performance of Chukrasia in a five-year-old field trial in the Northern Territory, Australia B.V. Gunn1,2, K. Aken1 and K. Pinyopusarerk1 1Ensis, PO Box E4008, Kingston, ACT 2604, Australia (Ensis is a joint venture of CSIRO and Scion) 2Email: [email protected] Revised manuscript received 9 February 2006 Summary eastern Asia; major uses include fine furniture, turnery, doors, windows, light flooring and plywood (Ho and Noshiro 1995). In an experimental planting using seedlots from a range of provenances of Chukrasia tabularis and C. velutina established Chukrasia is deciduous and typically 20–25 m in height, but it can at Berry Springs near Darwin in the Northern Territory, Australia, grow to 40 m tall and over 120 cm in diameter at breast height (dbh) C. velutina had significantly faster growth. The trial consisted of (Kalinganire and Pinyopusarerk 2000). Boles are generally straight 16 seed sources from natural stands in China, Laos, Myanmar, with large convex buttresses up to 150 cm above the ground. Thailand, Vietnam, and seed from a stand already planted in Chukrasia velutina is reported to be the smaller of the two species, Darwin. The early performance and variability of species and with a fissured rough and corky bark in drier deciduous forests. By seedlots were assessed at 5.3 y of age for height and diameter contrast, C. tabularis occurs in moist evergreen rainforest and is growth, axis persistence associated with apical dominance and readily distinguished by its smooth bark (Gardner et al. 2000). single-stem growth, stem straightness, bark character, incidence The genus Chukrasia has a wide natural distribution in southern of suckering and damage by termites or shoot borers. -
Chukrasia Tabularis1
SEED LEAFLET No. 42 October 2000 Chukrasia tabularis A. Juss. Taxonomy and nomenclature Fruit and seed description Family: Meliaceae Synonyms: Chikrassia tabularis Fruit: erect ovoid or ellipsoid dehiscent capsule, 2.5- A. Juss, Chukrasia tabularis var. velutina (M. 5.0 cm long, with 3-5 locules. The fruit wall consists Roem.) W. Theob., C. velutina M. Roem., Swietenia of an outer woody layer and an inner stony layer, chikrassa Roxb. which tend to separate from each other when the fruit Vernacular/common names: Chittagong wood (Eng.); splits open. The capsule contains 180-250 seeds ar- surian batu (Malay); boga poma, madagari, pabba, agil ranged in layers on the central columella. (Ind.); yinma (Burm.); siat-ka, yom-hin (Thai); Seed: about 1.2 cm long, flat and with a brown mem- Chittagong wood, chikrassy, yinma, yonhim (trade branous wing twice the length of the remaining por- names). tion of the seed. Cotyledons thin, radicle facing the wing; endosperm absent. 50,000-100,000 seeds per kg. Distribution and habitat Widely distributed in the moist tropical forests of Flowering and fruiting habit South and Southeast Asia where it is a dominant Monoecious species. Flowering normally begins canopy tree. In peninsular Malaysia, it occasionally when the tree is 8-9 years and in some places there is occurs as a coloniser of bare lands. a masting period every 2-3 years. Within the area of In the area of natural distribution it is found in the natural distribution the tree is leafless from Decem- lowlands and up to 800 m altitude, in areas with ber to March.